Ec-00_004140.2 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ec-00_004140.2
Unique Name	Ec-00_004140.2
Type	mRNA
Organism	Ectocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length	120

Homology

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BLAST of Ec-00_004140.2 vs. uniprot
Match: D8LR06_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR06_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 3.780e-20
Identity = 56/98 (57.14%), Postives = 60/98 (61.22%), Query Frame = -3

Query:   95 GAAQAFRLGGSPDEAGSCT-VITDLRQRASRCRGGSVGICRCSRRTPR-----------VASSSRFVVAGG*EEPESAWREEETPVKTDNPVGTCSRE 352
            G  + FRL GSPDE GSCT VITDLRQRASRCRGGSVGICRCSRR  +           V   SR  +  G          E+T  KTDNPVGTCSRE
Sbjct:    4 GQRRTFRLDGSPDEGGSCTAVITDLRQRASRCRGGSVGICRCSRRAYQGGEQPQGFFLPVVGRSRSPLGNG----------EKTSTKTDNPVGTCSRE 91

[Close]

BLAST of Ec-00_004140.2 vs. uniprot
Match: A0A6H5K3H5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3H5_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 6.820e-16
Identity = 53/120 (44.17%), Postives = 58/120 (48.33%), Query Frame = -2

Query: 1329 RLVADTHLDAATDAFVKAYVEERVRPDWVVTSPPTSTPSPF*SRRCGSGVWE*PSS*G*LFWSPPKPEGDG*RKINAPDRVVMLPRATYPGRGCSSTEAWFIWETGRVGEEGRKPAICFS 1688
            RL ADTHLDA ++ F   +  E  RPDW+VTSPP         R  G             F  P K  G    K N P  VV+LPRATY GR CSSTEAWFIW     G E    A  F 
Sbjct:   58 RLTADTHLDATSEEFTAMFSTEGQRPDWIVTSPPYGNAFSILVRALGVVRVGVAFKLRLSFLEPTKTRGKW-LKDNPPSAVVVLPRATYCGRVCSSTEAWFIWHLASDGVERPGQAFFFD 176

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BLAST of Ec-00_004140.2 vs. uniprot
Match: A0A6H5KB56_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB56_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 4.070e-14
Identity = 38/44 (86.36%), Postives = 39/44 (88.64%), Query Frame = -3

Query:  221 GAAQAFRLGGSPDEAGSCTVITDLRQRASRCRGGSVGICRCSRR 352
            GAAQ F LGGS DE GSC+VITDLRQRASRCRGGSV ICRCSRR
Sbjct:    6 GAAQGFLLGGSQDEGGSCSVITDLRQRASRCRGGSVRICRCSRR 49

[Close]

BLAST of Ec-00_004140.2 vs. uniprot
Match: A0A6H5K6T5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6T5_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 7.350e-8
Identity = 28/46 (60.87%), Postives = 30/46 (65.22%), Query Frame = -2

Query: 1374 LFWSPPKPEGDG*RKINAPDRVVMLPRATYPGRGCSSTEAWFIWET 1511
             F  P K  G    K N PDR+VMLPRATY  R CSSTE WF+WET
Sbjct:   10 TFLGPAKSRGRW-LKDNPPDRIVMLPRATYRRRRCSSTETWFVWET 54

[Close]

BLAST of Ec-00_004140.2 vs. uniprot
Match: A0A6H5L5Q9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5Q9_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 1.430e-5
Identity = 26/37 (70.27%), Postives = 29/37 (78.38%), Query Frame = 1

Query: 1477 PSPSGFGGLQKSQPQLEGYSHTPDPHRLLQNGEGVLV 1587
            P PSGFGGL+KSQPQLE + HTP+P    QN EGVLV
Sbjct:  172 PLPSGFGGLKKSQPQLECHPHTPNPQSTFQNSEGVLV 208

[Close]

BLAST of Ec-00_004140.2 vs. uniprot
Match: A0A6H5L6X2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6X2_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 2.130e-5
Identity = 29/40 (72.50%), Postives = 32/40 (80.00%), Query Frame = 2

Query: 1475 SHRPLVLVGSRKVNLSLKATPIRPTRIACFKMAKACLWVG 1594
            SH PLVLVGSRKV+LSL ATP RP   A FK+AKACL+ G
Sbjct:  172 SHCPLVLVGSRKVSLSLNATPTRPILKARFKIAKACLYGG 211

[Close]

BLAST of Ec-00_004140.2 vs. uniprot
Match: D8LGJ8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGJ8_ECTSI)

HSP 1 Score: 52.8 bits (125), Expect = 3.130e-5
Identity = 30/34 (88.24%), Postives = 30/34 (88.24%), Query Frame = -1

Query:  217 MKRGAAQ-SLQISANALPDVGGAAWAFVVAVGAL 315
            MK GAAQ S QISANALPDVGGAAWAFVV VGAL
Sbjct:    1 MKGGAAQQSSQISANALPDVGGAAWAFVVVVGAL 34

The following BLAST results are available for this feature:

BLAST of Ec-00_004140.2 vs. uniprot

BLAST of Ec-00_004140.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7


Match Name	E-value	Identity	Description
D8LR06_ECTSI	3.780e-20	57.14	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5K3H5_9PHAE	6.820e-16	44.17	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KB56_9PHAE	4.070e-14	86.36	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K6T5_9PHAE	7.350e-8	60.87	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L5Q9_9PHAE	1.430e-5	70.27	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L6X2_9PHAE	2.130e-5	72.50	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D8LGJ8_ECTSI	3.130e-5	88.24	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr_00	contig	chr_00:5314212..5326168 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR	2016-10-08

Properties


Property Name	Value
Length	2335
Hectar predicted targeting category	other localisation
Gene id	Ec-00_004140.2

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ec-00_004140	Ec-00_004140	Ectocarpus species7 Ec32 male_plus_femaleSDR	gene	chr_00 5314212..5326168 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_004140.2	Ec-00_004140.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	polypeptide	chr_00 5325627..5325986 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_004140.2.1	Ec-00_004140.2.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 5314212..5314305 +
Ec-00_004140.2.2	Ec-00_004140.2.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 5322341..5322855 +
Ec-00_004140.2.3	Ec-00_004140.2.3	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 5324443..5326168 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_004140	5UTR:Ec-00_004140.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	five_prime_UTR	chr_00 5314212..5314305 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_004140.2	CDS:Ec-00_004140.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	CDS	chr_00 5325627..5325986 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_004140	3UTR:Ec-00_004140.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	three_prime_UTR	chr_00 5325987..5326168 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at chr_00:5314212..5326168+
coding sequence from alignment at chr_00:5314212..5326168+

mRNA sequence

>Ec-00_004140.2 ID=Ec-00_004140.2|Name=Ec-00_004140.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=120bp
MDWDFSALPYVSLSTAYRLYANTSDSVLGCTEADLTHTHTSGSCRLLQHG
DRVNSGRWRLRLGRHHKNRLPCLPVPHVPEGLEPENRECNVVVTSSVILT
TVDGRCYLAERVCGQRKKK*

spliced messenger RNA

>Ec-00_004140.2 ID=Ec-00_004140.2|Name=Ec-00_004140.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2335bp|location=Sequence derived from alignment at chr_00:5314212..5326168+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
AGAGTCTACTCACCCACCGTCGCACCTCTCTCTTCATTCCTCTGGCTCGG
CAACAGCAAGATTCCACCGAGATCCCAAACCCCTACGTTTTCAGTATTCT
CTGCTACAAGTACCAACCGGATTGTCGGTCTTGACAGGGGTCTCCTCTTC
ACGCCAAGCGGACTCCGGCTCCTCTTAACCACCGGCAACAACAAACCTGC
TACTGCTCGCCACTCTGGGAGTGCGCCGACTGCAACGACAAATGCCCACG
CTGCCCCCCCTACATCTGGAAGCGCGTTGGCGGAGATCTGTAATGACTGT
GCAGCTCCCCGCTTCATCTGGAGAACCGCCCAACCGAAAAGCCTGCGCTG
CCCCCCTTCATTTGGAGGCGCGGAGGTGATGAACTGCTGCCCTCCCCTAC
ATCTCGAGAGCGTAGACCCATTGTTATTGGGTTTAGGCCTTCTTTTTATG
CGCCGCTGGCGCGCAGATCTCATACAAAAACACGCCTCCTCCAGAGGCCT
TATTGACTGGGCTACAGTAAGACCGTGGCCAGAGGGTTGACGGAGAGGTG
GAAAGCTCAGCTGGAGGACCGAGAACGACTGGCAAGAACGCCAAGGCTGC
GTGGAGCAGCTGAACGGTGGAGTCCACTTCGTGACCCAGGGAGGGCTTTC
TTAACGGGGTGGAGCCGCGTTTGGCTGTTCTACTGGTACAAGTTACCACG
AATTGTTTCGGCCTTGTACGCCTGCACCTTCACACAAACCATGTGCGGCG
TGTGTGGTGTGTGTGTTTCATTGGTGTTGGGTTGATGGACTAGGTCATGG
ACAGGTGTATGTCATTTTTTTAGCGGGGCGGGAGTTGTTGCTGTTTTTTT
GGCAGCACTGGCGACGACAACGACTGCAAGATGGCACAATACAAAGTGGC
CCAAGATTACACTAGTAACCTGAATTTTGGGGAATGCACAATCGAACAAC
GTAGATGATATTTTGCGTTGCAAACCAAGAGGAACTTCTACTTTGTCGAC
CGCCAGTCGCAAACGTATCGCGCTCAGCTTAGGTCTGGCCATCGTGTGCA
CGCAGGCACACAAGGAACAACGGGGTGTCCTGCTGTGCCGTTGTTCTCCA
GCACAACATAATTTCAAACGTCGGGCGTCTCTCCGAGACATCATCACGGA
CCACCAAGCAAGACGTCAGCACGGACAGGGGTATCGCTGGTAGTGGCCAT
GGGAGGCAAACACGGAGACATTTCCATTCAGGTTCAAGAGCATATACTTC
TGACACTCGCTTACATTTGGGCTATTGCTATGCAACTTTGACACAAGCGC
ACCTACAATTCCAGAGAGCACCGTCAGGCAAGGAAAAGCAAATCGCAGGC
TTGCGGCCTTCTTCGCCAACCCGCCCTGTCTCCCATATAAACCACGCCTC
AGTAGAGCTACATCCTCTTCCGGGGTACGTAGCGCGGGGAAGCATCACAA
CCCTGTCAGGCGCATTTATTTTCCTTTAGCCATCGCCCTCTGGTTTTGGT
GGGCTCCAGAAAAGTCAACCTCAGCTTGAAGGCTACTCCCATACGCCCGA
CCCGCATCGCCTGCTTCAAAATGGCGAAGGCGTGCTTGTGGGTGGGCTCG
TCACGACCCAGTCCGGACGCACCCTTTCCTCGACGTACGCCTTGACAAAC
GCGTCTGTGGCGGCGTCCAGGTGCGTATCTGCGACCAATCTGAGGGTAGG
GAGGTACACAAAAAAAAAAGCGCCGCCAACGGGTTAAGTTAAAAATTGGA
CGTGAACACTGAACATTTGCCACTTTGAATAGTGGCCAGTTTCATGGATT
GGGACTTTTCAGCACTGCCGTATGTGTCTTTGAGCACAGCCTACCGACTT
TACGCTAACACCTCGGATTCAGTGCTTGGTTGCACCGAAGCCGACCTGAC
ACACACACATACGTCGGGTTCATGTCGTTTGTTGCAACACGGAGACCGTG
TGAACTCAGGACGGTGGAGACTGCGTCTTGGGCGGCACCACAAGAATCGA
CTACCCTGCCTTCCAGTTCCACATGTTCCAGAAGGGCTCGAACCTGAAAA
TCGTGAATGCAACGTGGTGGTAACTTCATCTGTTATTCTTACTACTGTAG
ATGGTAGGTGCTATCTGGCAGAGAGAGTGTGCGGGCAGCGGAAAAAAAAA
TGAGCGGCGCTCTACAGCAGTACATATACTTCTTCCGATGTCTTCGGGTG
GTAGGTGCAATGTGGCCGAGGGAGTGTGCGGGCAGCGGAAAAAAAAACGA
GCGGCGCTCTACAGCAGTACATATTCTTCTTCCGATGTCTTCGGGGGGGC
GGTTGAGGCTCTTCTCACAACACGGAGAAAACCTC

protein sequence of Ec-00_004140.2

>Ec-00_004140.2 ID=Ec-00_004140.2|Name=Ec-00_004140.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=120bp
MDWDFSALPYVSLSTAYRLYANTSDSVLGCTEADLTHTHTSGSCRLLQHG
DRVNSGRWRLRLGRHHKNRLPCLPVPHVPEGLEPENRECNVVVTSSVILT
TVDGRCYLAERVCGQRKKK*

mRNA from alignment at chr_00:5314212..5326168+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ec-00_004140.2 ID=Ec-00_004140.2|Name=Ec-00_004140.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=11957bp|location=Sequence derived from alignment at chr_00:5314212..5326168+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
AGAGTCTACTCACCCACCGTCGCACCTCTCTCTTCATTCCTCTGGCTCGG
CAACAGCAAGATTCCACCGAGATCCCAAACCCCTACGTTTTCAGGTACGG
TCCCAACACGCCGACGATTGGCGAACATGATGCCTGGCCTAGAATAGCAG
TCAGCTATTGTAGACTAAATAGATAACCCGTTAAAGTGAGGTTGGCTACT
CTTCGCTCGGATGTCAGAGAATTCTTTTCCGGCAGATGCTTGTGATTGGC
TTGAACGGAGTTACGACAGAGGGATTGACGACGCTACTCACTCGCGCTGA
GTCACTGCCCACGATGACGATCGGTGTTGTCACTTACAGCAGCAAGCTGT
GCGAAGGAACGAGCGTAATTTTTCCGAAAGGTTCGCGTTCAACTGACTCT
CAAAGTCAGAGTCAGATCAATTCCTACCAAGCAAGGCGATCGGAGAACGA
CCAAATGAAAAAGATGCGTTGAGTGTTGGGTTGTTGGGTGGGTGGGCAGT
ATTGTGTCATGGTTTCCTCCCGAAACAAGGCGACAAAAGTGAACTTTGCC
ATAGTGTTGTTGCTATGTTCACTATTCCACATCTAACGCGTGACAATGCT
GGGAGAACAACTCTGGGGAGGAGAAGTATCCTTCTCTGTTGTTGCTATTG
TTGTTGTTGTTGTTGTTGAAAAGCAATTTTGATGTTGACGGATTTAAAAA
ACAGACGAAAGAGGCCCACAATTTTGTTTACAACAGACGCACAAGACCAG
TCGGGAGGCATCGCGAAAAACAGCAACTGTTGATTCTCGCACAGGGCAGC
AGTGGAGGCTGCTCAAAACATGCATATAACGCGTCTACTTCCACAGGCCT
CCTTTGAAATCAAGATATAAATTCAGAATATGATAAATTCAAGCAAAAAG
AGCCAAAACGGAAGGCACTCAAATAAGGTCAGTTTTGAGGGCTAGACTAG
GCATTCCATTGTCAGCAGTAGAGGACATGATGAAGAGGCGTCGTGCGTGC
TGGCACGTTCAGGTTTACCACTGGAGCGGAAATATCGAAGGTCGCAGCAG
CCGCTGAAAACAGTCCGAAATCTGCGCCGGAACCAAGCGGCATCCAACAT
TTGTCACAGCCATGCTTGCCGCCACCAATCCCAACCTCCTGAACTACAGG
GTTACAGCAGTAGCTGATGCCACTAGCTTACGGCGGTGAGCATGGGTGTG
ACAAATGTTGGATGCCGCTTGGTTCCGGCACAGATTTTGGACTGTTTCCT
GAGGCTGTTGCGACCTTCGATATTTCCGCTCCAGTAGCAAACCTAAACGT
GCCAGCACGCACGACGCCTCTTCATGGTGTCCTCTACTGATAACAGAATG
CGTAACTTACCCCTGGCGGGGAGGTTATTTTCTTTCTTTTGTAAAGGATT
AAAGTATGGGAAAAGAGCCAGCGCCAAAACCACTATTCTTCCTACCCTTA
AACTCGTGTCAGTTGCTAATCCCAAGAGAGATCTAGCGAAGACGCGGTTC
GCGGTCACAAAAATGCTAGAGCCATCACAAGACCTACCAAATACGCAAAC
TAGCAAAAAAAGGGTACATAAGCCCGAAGAGGGACACCTACATCCCTGCA
GCCCTTTCGGACCCAAAAACTGAACTACCCGTCCATACACTACATTCGAC
TATAGCAGCATCATCCCTCCTCTCCCATACTTTACCAAAATGAATGTTTG
TCGACTACAGCGTACAGCTGTCTGGAGTGATTCCTGTACAAAACCACCAT
GGTAGGCATGGTACAAGTTCGGGGCCCGCAACTGCTGTCTGGAGAGCTGT
CGGAATGATTCCCCGTTGACATACAGTGAACAAGAAACAACCAACCACAG
CCATCATTGCAAGTCAATCACCGAATCTACCCCCGATTATCTGTGTTGGA
CACAGCAGTATAAATAATCGACACTGACTATGGATCGTTCCGCATTGAAG
ATGTCTTTCACGATGCAGGTACACAAGAAGGGCACCCGGGGTATCCGCGC
CATCTGTGCCGCGTCTCTCTACAAAACCAGTGACGTCATCACACACACCC
AACACCGACGGTCAGGAAAAAACGCGAGATACACAACGCAAAATGTTCGT
CCGTGCGTCACGGTTTGATGTCGCCCGTCTGCTCCAGTGCCGCTGCCCCG
ATGCCGCTGCTCCGGTGACGCTGTTCCGGTGCCGCTGCTCCGTTGTCGCT
GCGGTCAGTCCTAGCACGACCAAACTCGACCCGCTTTGTCCGTACACGCT
CTCGTTGATGTCCTTCCCAGTCGGTTCCTCGCTTTATCCCTCGTTGCACT
CAGGTTCTTGGTCTAAAAATTCTCGGGGCGAAGGGTCAACCAGCCCACTC
AGCTCGTCACCACCTACTCCCTCCTCCCCTTTGATGGCAAAGCCAGGTTA
CTGACTACAGCACAAAATTTGTCTGTACCTTCGAACAAAAAGGGAACTAT
CCACCCACCCTTAAAATATGGTTGTTCTGAGCCGCGGAGCGCGAAGCGCG
ACCATTCTTGTCCATCCGTCTGAAGAGGGAAGAAGGATGCTCTACCAACC
AGGGGCCCGAGTTTCGATGAACGACCGCCTGAATTTTTTATCCTTCGACC
AGCACGAGGTCTTAGAGCACCGATCGATTATTTGCTGGGTTGCATAAAAC
AAGAGAAATAGGGCGCTCTTCACCTCGCCGGTTTCGTCGTGCTCCATCAG
CAGATGACGGCCCTGCCGGCATTTTTACCCAAAAATCACAAGAGACAGAT
CACCCCGATCACGGAGTTGAAGAGGAAATGCAAGCCAAGGCATCGCCATA
TATATCTCACACGCACGCGCAGTCACGCAGTTGGAACAGAGCACTCAGTC
AAACACGCAACACCAATGGAAGGGGCTAGACGGCACTGGCGGGGGAAGGG
AGCCATACGCACAGCCCCTGGCAGATGCGATTGTCATTACTGCTGCTCCG
GTGTGTGGGGAGGGGTCACCTGGAAGTACACCAGTGCCTGCTACGGGAAC
AATGTTGTGTTTCAGGCGGCGGCGGCGGGTGTCCCCTTGTAGTTCCTCGG
CTGGGCGCTCCACCCGACTCCATCATCATTCTCCTCTCGTCCCGCAGCCC
CTCGCGAAAAGCTACGAAATTCTGTTAGCTAGGTCCACATTCGATATTGC
TAGCTGCTGCCCTCCTGGCCGTGTGGCCCTCCGACTCGGGCTGCGTGTTA
CACGCTGTGCATTCTTCAACACGTGGCCCTTTGGTCCAGTAGACACGCGC
CTATCAAACTCTTGCTGCAGGAGTAGCGAGGCAGCAGAATGAGAACTCTG
TGAGCCATTCAGTTTGTAGGACCCCAGAAAACCAAACCAAGACAACCCAA
CCAACAAGCCTCCAGGCTGGTACAATAGGAACCCAAATACAAACGTAGAT
CTGGAAGATATTCTGAATTCTTCCGTGCACAATGAACTACAGTATACTCG
GTCTTCGACAACAAACGTTTACCTCTAGGCGGCGACGGTTGTATTTTCCA
TAGATGCATGTTGCCTCAGTAGCTTCCGTGTATCCTATGGCCCCTTGTCC
TCCGCTAGCCTCCATAAGGCGATATATACCCACACCTCGTGGGCACAGCT
CGCGGGGAATGGCTTTACAGTTGCCGCGCGTCACTCTGTACAGAGAAACC
ACCGAAAGCCCAAATCGGTCGGGGGACGTGTATGTATGGCGTCTACCGTA
GGTGACGTAAGATTCCACACACCGTGTACGGACATCAAAAGCTCGAGTAT
TCCACGTCGAAGATGATGCGTACACCCAGCAAGACGTTGTCGGAAAGCTG
TTGAAGATACGGCTTCCACATCAACATTTTCGGCAGCAACCAAGCTATGA
AATCGATCCAGAAGGTGTGATATCATGTTATATATATACTCACAGGATGG
TCGTCGTGACGTGATACAATTCTTGTTACTAGTATGGAAGAAAATTAAAA
AAAGATGGCTCGATTTTTGTATTTCTACAGCAGTATGGACGAGACGCCGA
CTGTACATGGAAGTCGTACGAGTGTCGACTCAGTTGTGCTGTCACAGTAT
CTTCCACGCACTTCTGCCAGTGCTGGTTTGTTGATTGGTGGAGTCTTGTA
GGTCGAGATATAGCAGTGGGATTCTCGGGTGGTGGAGACAAAAAGTGTGA
ACCAGAGCAAAACATTTCATGCATAGCTCGACTACTGCTGTGTTTTTGCA
ATAGCGGTATGGACTAGACGCCGAACGACGTCCGCGTACTACCGCAACGA
CCTAACTGGATGGGATACTTCCTGCCACGGCGAACCATAGTACAGTGCGA
TGCAAACATCCGTTAAGTGTGTCGCGCAGCTGCCACATGTGTCGACGACA
GGTACACGTAGAGCTCTCGCCATGTTGTCGTTACCGCGCAGGAGGAGCCC
TCTGAGATCTTTCACATGGTGCTACAACGGCAGGAGTACTACTGTACATA
GATGTCGTAGGAGAGTGGAGTTGTGCTGTCACGGCATCTGCCACGCACTC
TCCTACCGGTGCTTGCGTCGATTGGAGTCTTGTAGGCCGAAATACAAGAG
TGGGTTGGGTTCCCGGGTTGTGGAAGCAAACCTGCCTGCAACAACAGAGA
AGGCGGTGTTCTATTTCCTAGAGTTTTTTGTTTTTGCGACATGTGGTTGC
ATATTTCTTTGCCACTGCCGAAAAAGACCGCTGGATCGTTCCGCAGTCCA
CCTTTCACATTTTTCATTTTACACCGAACGACCCAGGATGGGTCGACCTT
CATCATTGTTGTCGTTGTTGTTGTTGTCTTCACATGAAAAACCGTTCCGA
TCTCTCTCTACCCAGTAGCTTCATATGTCCGTACTTGTGGATTACCTGTT
GGAAATTGTGGGAGTCCCTTCATTCCGAGAGAGCCCCATCCGGCCTTTTC
TTTTTTTGTATGCACTTTTCTTATAAATATGCACTTTTTTTCGTGTGAAG
TTTTGACGTTGCGCTTGCCATCGTCGCTGAAGTGTTTGTGGCTTCAAACC
TTCTCAGCCGGCCTTCAAACTTCTTGTTGATAAGTCTCCGTGGTAACTTC
TCCGCGTATTATGCAGTTGGTTATGACCTGCGCTTTGACTTTCACGATGG
ATATTTTACCTCTTTGTCTTGCTTTGGAGAGTACCTGCGTTGTACGGAAG
GATCGGTCCACGACGCAAACGTCGACGTCTCCGTTTTTGTTTTTGTTCCC
GCCGCACTCCTTCCTTGCAGCGGTTGTCACACCGACTTCGAACGTGGGGT
GCAATTTCCTCTCTTCGTACCTTCCTCGTCGCCCTTCTCCATCGTTATGT
ACACAATGTATTCCTCGATTTTTCGGCTTTTCGATTCCGATAGAGACAAG
ACTACAGACTGACATGTCCCTTTCACCCACGACGGGACCGCGCGCTCGTC
GAGTGCCGAAATTCTTCACCACTTCTTGCGTCTAACAACACCGTCCCTTC
TTCCCGCCCCAACAAATTTTCTCCCCTTCTTCTTCTTCTTTCCTTTCTCC
CGGACACTCACCACCATCCGTCCTGGATGTTGGCCCCCAGCCCCATTGGG
GGGCGGGGGGCCAATCCTTTACGCTATAGTTTCACCTACTGTTGTAATTT
GCGGTGTGTGCACCCATGCCCCAACGAACGGCCGTTCCAGGAACCTTTGT
TTATTGTTGTTGGTCGACTGCCACCCGCCACGGCTCAAAAGCAATGCAGA
TAGACTACTGCAAGGTATTGAGTCGGCTACCCCGCGGTTTATTACCCTGC
CCTCAAGTACTAAAGAATACATAGTTTACACTTTGATAGACATGCTTTCC
TACGTTTCACGAAATGCTTACAGCCGTACAAGGCTTCCCCTTCGGGGGGT
AGATGACTCGTCTCCCAGGGTGACACAAGAGGGCGTGGTCAATGTTATCG
GATTCGCATCGTTGCATCTCGAAACGTCATGGCGCTTGGTAGTGCGTGCC
GGTTTTGCGTATAACCTGCAGAATTTGCCTGGAATTTCGCGCATCACGTG
CAGCGTATTTGCTGTGACCTTTCGCTGTGCGTGAGTGTGTGGATTTAAGC
CAGTGACGACTTCTGCTGCAGGGCTGCGGTTCCTACTGCTGTACATTCGC
TGCGTTTGATCCTTCGCCCTTATGTATTCGTGCTGCCCATGGTCTGTAAG
GTTTGTGTGCGTTGCGCAGGAAATAAAGAGGAAAACACCTCGCCAAAGTG
TTCCTGTTCAGTTTTCATGTATATTTGGAGGCGTTCGGGGTTCACGTTCG
CAGCCCCTATAACAGAGACATTTCGAACGACCTTTTACCGGGGTCATGCG
CACCCCCAATGCCTCCCGAGCCCCACTCGTAACGGGTAAATGTACTGACG
GGCCCTCTGTAACTTGAAGCTCCCGATGGGGGTGCTTTGGATCATGAGTC
CCCAGAAGCTGTAGCACCCACCGCATAACAAGAGGCGGGCACACTAGCGA
AGTATAGCACTCTGTATAGTCGTGTAGACAATTCTGCTTCAGCTCTCGAA
CGCTGATAGCTCAGAACCCGATCGATGAGAGCGCGGCGGCGACTTTAGGC
CTCACACTAAACCCGAGATGTTAGGGTCGATTCTTCCGCTGGCCCGCCAC
AGAGCTCCGGCGGATGTCCCCTGTTCAGGGCGTCCCCAGTAAAGTATTTC
CATCGCCGCCCGCCCGTCGCGGAGCTGAGCCTTCGCGCTCCTCCAGCCCT
GCACCACAGCGAAGACCGCCCAAATCGGGTGAAACCGGCCGATTACCCCC
GCGTTCCGGAGAGTCTACGCCGGGTTGTTCGTTCACAAAATATTAAGGAC
TACGATTAGAGGGCCTTCGGCGGAGAACCTTGACGTCGAGTAACGTCATC
ACCCATTTTGTTCTCGGCGGGCCTTTTTTCGCCCCTCGCAAACGTAGTCA
AATGCTGAGGCCACATCAGCAGGAGCAGCATACAGAAGTACACGTGTGAC
GTATCTCTGTCCCACAGTTTCAAGTTTGGACGCCAAGTAGCCTACAATAC
GCAGGGTGATCCATAGACATGCAGGCACTCGCACGTCAACGCACGCGCAC
GACCAAGTCCGTGCTCTACAATACGTCAATGGCATATTTGATTCCTTACG
TGCCAAAAGTATACCCCGTGCGTGCGTGTAGGAGACGACATTGATGACGG
TCTCTTTCTGGGAGTGTGTTGATGATGATGGTTGAAATAGACCGAAATGG
AATATTGAGGTACTTGCCGTGTCCTACTGACCCGGACAGCATTTCACCAA
GGCTTTTCATTCGCACACCGTTTTAATGCGAACACAACAACAATATACAG
CAGATATACATGCATGCATCCGATATGTATATCATGCACATTGTTGTTCA
CTACTAGAGCCGGAGTGTTTGCCGGGCATGCCCGTATTTGTGTCCAGTGA
CCAGAATGTCTCGTTGATGGCTTGTATAAGATCCGCAGGACAAACGCACG
ACAGACAGAGGTTAAAGAGAGTGCTTCACACAGGCTGACGCAGCATGGGG
TCGCCGAAAACTGATTGAAGTCTACAATATCAGGCACCACAGCAGGTCCG
TTCGTCTACGGAAACAGAACCTTCCTCAGATCCCTTCTACATATGCACAC
ACACGAACACCCTCCCTGGTTCCTTACGCTGGTAATAAACCACCACCGTG
TGTACTTGGACGTTACCGAAAAGCCGAACAAAAAAAAGGCGTTGCAGGGG
AAAACCCGGCCTCCGAACCACAAACCCTCGCAATGATTTCACGTCTACCA
AAATACAACACAATCGTTTTCATCTCAACTACTCCAATTCCCTACAAACG
AAGGCCAAAAAAGGAGTTTTAACTACTTCAACTCCCTCACATGGCGACAT
ACCAACCGGACCAAACTACATCGATGGTTCGGAAGATCATCTCAACATCT
TTCAGGTAAAAACACACATAAAAATACCAACGTTAGGGGAACACAGGTAG
CTGTGCTATCCCGTGACACCTGGCATACAATTCGAGCGACAAATAACGAC
ATTGATATGATAGCGACTGCTGAGGGGAGGTCGTCAGAGAAATGCACGTT
CTCTGCCATCGGGTTAACGCTACATTGGATGCCCTCCCTTATTGTGCGAC
TACACACAAAAAACTCAAATTGCTACCAGTATTCTCTGCTACAAGTACCA
ACCGGATTGTCGGTCTTGACAGGGGTCTCCTCTTCACGCCAAGCGGACTC
CGGCTCCTCTTAACCACCGGCAACAACAAACCTGCTACTGCTCGCCACTC
TGGGAGTGCGCCGACTGCAACGACAAATGCCCACGCTGCCCCCCCTACAT
CTGGAAGCGCGTTGGCGGAGATCTGTAATGACTGTGCAGCTCCCCGCTTC
ATCTGGAGAACCGCCCAACCGAAAAGCCTGCGCTGCCCCCCTTCATTTGG
AGGCGCGGAGGTGATGAACTGCTGCCCTCCCCTACATCTCGAGAGCGTAG
ACCCATTGTTATTGGGTTTAGGCCTTCTTTTTATGCGCCGCTGGCGCGCA
GATCTCATACAAAAACACGCCTCCTCCAGAGGCCTTATTGACTGGGCTAC
AGTAAGACCGTGGCCAGAGGGTTGACGGAGAGGTGGAAAGCTCAGCTGGA
GGACCGAGAACGACTGGCAAGAACGCCAAGGCTGCGTGGAGCAGGTATGT
GGCTACTAATTTTTCCCATTGTCTTTGCGTACAAGGGTGTTGGGCACTAA
CTTTGGGGCATCGCCGAAGTGGCCTTGGATGCTTGGATGGCCTTGGAAAT
CACGCCGCAGCGCGAGTCTCGCAGCGCACCATGCGGTGTTCATGGACAGC
ACTCCTTGTCTCTGCCTCTGCGAGAAGGAGAGTTCCACAGGATACGCATA
CGTTCACGCTTATTTGTGATAGTCGGCACTGATAATTGTGGGTGGGTTCG
CATATTCGGGAGCACACCACCTGCTTGTTAATGTGTTGTGCGCTGCTGCC
GTGTACCATGTGTCGTGGTACGCGCGACAACTCAAGTTGGCCTAGAGAGC
ACACCACTCAAAGTTTACGCACATCAGCAACACTTACAGCTTAGGGATAG
GCCTCCCGGTCAAGTGTTTTGTGTGCACGTAGAAAAGAAGGATCCCTCTC
GCCGGTTTCGCAGAGTTGTCTGCGTTCTACGTAGGCCGTGTTGCACATGT
AAGCCATGTCATGTGATGTTGCAGGTTGGAAACACTCCGCAAGCCGCTGC
TGTCTTGTCGGTTACCGTAGGTGACACAAGATACCACACCCCCTGAATCT
GTTTTCAGAGCTTGATTTCTCCACGACAAAATGAGGGCAAGGCCGGAAAC
GGCGGCGTTGAAGCCGCCTGGCCAAGAGATTTTTGAGAACGTGTCGTTTG
ATTTCTGCGTCCTCTTCGTCGTGGAGTGATTGAGCTTTGACAATCGGTCC
AGGGGGTGTGGTATCTTGTGTCACCTACGGTAGGATTAGGCCCGAAGAGT
GCCGCCGTGCGCCCGTACCCTGTAGTGTACGGTACATATTACTTTCGCCT
GTTGGGCGTGCTGCGTGTACGTAACTGCTTGGTGCTCTGAATATGGCCGC
AGGCTCAAATATGTAACATGTGCGGGAGGATACCGTGAACCGCTGTGGTA
AAAATAGCACGCGTTGCAGCGGTAGCGCAAGACACCACACCCCCTTGAAC
GAATAATTGTAGCAGCCAACCGAATATCTTGCACGTGCGATGCCGATGGT
AGCAGTAAAGGGTGAATCGAAACCCTTCACAACGAAACATCCTTGCTTTC
TACTTGTAGGTTCAAGTTGTACTCCTTCCCCTACGGCCTAGACACAAACA
ACGTGCGTTGGGTAGAGGACGATGACCATGGTAGTTAAGTAAACACCAAC
AGTACTTGGATCGGAATAGCCATGAGGGGATCCATGAGTCTCTTATCCCA
GCGCAAAGCTCGTTCCGTGATATCGCGCCTCCCCAACCCAACAGACAAAT
TGGTTCATTGGGTAAACACGTTGAGGACGCAGTTTATCTTTGATGCCCTT
GTACCTTTTGTCCGTCCCGGAGCTTCATTTTCCCCTACAAAGTTCGTTCA
CCCCCCGGGGAATTCGCAAAGGCAAACTGAGGTTTTCGTTGGGTCTCTCT
CTGGTGACATTCAACCGGCGAACTTCAACTTCGTTTTATCTGTTGTTTTT
TTCCCCATAAAAACAGCTAATGCGAAGACTTTGTTCTCTCCCCGACGCAA
TATGTATCTCGTGCCAATGTCCTTGTCACAGCTGAACGGTGGAGTCCACT
TCGTGACCCAGGGAGGGCTTTCTTAACGGGGTGGAGCCGCGTTTGGCTGT
TCTACTGGTACAAGTTACCACGAATTGTTTCGGCCTTGTACGCCTGCACC
TTCACACAAACCATGTGCGGCGTGTGTGGTGTGTGTGTTTCATTGGTGTT
GGGTTGATGGACTAGGTCATGGACAGGTGTATGTCATTTTTTTAGCGGGG
CGGGAGTTGTTGCTGTTTTTTTGGCAGCACTGGCGACGACAACGACTGCA
AGATGGCACAATACAAAGTGGCCCAAGATTACACTAGTAACCTGAATTTT
GGGGAATGCACAATCGAACAACGTAGATGATATTTTGCGTTGCAAACCAA
GAGGAACTTCTACTTTGTCGACCGCCAGTCGCAAACGTATCGCGCTCAGC
TTAGGTCTGGCCATCGTGTGCACGCAGGCACACAAGGAACAACGGGGTGT
CCTGCTGTGCCGTTGTTCTCCAGCACAACATAATTTCAAACGTCGGGCGT
CTCTCCGAGACATCATCACGGACCACCAAGCAAGACGTCAGCACGGACAG
GGGTATCGCTGGTAGTGGCCATGGGAGGCAAACACGGAGACATTTCCATT
CAGGTTCAAGAGCATATACTTCTGACACTCGCTTACATTTGGGCTATTGC
TATGCAACTTTGACACAAGCGCACCTACAATTCCAGAGAGCACCGTCAGG
CAAGGAAAAGCAAATCGCAGGCTTGCGGCCTTCTTCGCCAACCCGCCCTG
TCTCCCATATAAACCACGCCTCAGTAGAGCTACATCCTCTTCCGGGGTAC
GTAGCGCGGGGAAGCATCACAACCCTGTCAGGCGCATTTATTTTCCTTTA
GCCATCGCCCTCTGGTTTTGGTGGGCTCCAGAAAAGTCAACCTCAGCTTG
AAGGCTACTCCCATACGCCCGACCCGCATCGCCTGCTTCAAAATGGCGAA
GGCGTGCTTGTGGGTGGGCTCGTCACGACCCAGTCCGGACGCACCCTTTC
CTCGACGTACGCCTTGACAAACGCGTCTGTGGCGGCGTCCAGGTGCGTAT
CTGCGACCAATCTGAGGGTAGGGAGGTACACAAAAAAAAAAGCGCCGCCA
ACGGGTTAAGTTAAAAATTGGACGTGAACACTGAACATTTGCCACTTTGA
ATAGTGGCCAGTTTCATGGATTGGGACTTTTCAGCACTGCCGTATGTGTC
TTTGAGCACAGCCTACCGACTTTACGCTAACACCTCGGATTCAGTGCTTG
GTTGCACCGAAGCCGACCTGACACACACACATACGTCGGGTTCATGTCGT
TTGTTGCAACACGGAGACCGTGTGAACTCAGGACGGTGGAGACTGCGTCT
TGGGCGGCACCACAAGAATCGACTACCCTGCCTTCCAGTTCCACATGTTC
CAGAAGGGCTCGAACCTGAAAATCGTGAATGCAACGTGGTGGTAACTTCA
TCTGTTATTCTTACTACTGTAGATGGTAGGTGCTATCTGGCAGAGAGAGT
GTGCGGGCAGCGGAAAAAAAAATGAGCGGCGCTCTACAGCAGTACATATA
CTTCTTCCGATGTCTTCGGGTGGTAGGTGCAATGTGGCCGAGGGAGTGTG
CGGGCAGCGGAAAAAAAAACGAGCGGCGCTCTACAGCAGTACATATTCTT
CTTCCGATGTCTTCGGGGGGGCGGTTGAGGCTCTTCTCACAACACGGAGA
AAACCTC

Coding sequence (CDS) from alignment at chr_00:5314212..5326168+

>Ec-00_004140.2 ID=Ec-00_004140.2|Name=Ec-00_004140.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=360bp|location=Sequence derived from alignment at chr_00:5314212..5326168+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGATTGGGACTTTTCAGCACTGCCGTATGTGTCTTTGAGCACAGCCTA
CCGACTTTACGCTAACACCTCGGATTCAGTGCTTGGTTGCACCGAAGCCG
ACCTGACACACACACATACGTCGGGTTCATGTCGTTTGTTGCAACACGGA
GACCGTGTGAACTCAGGACGGTGGAGACTGCGTCTTGGGCGGCACCACAA
GAATCGACTACCCTGCCTTCCAGTTCCACATGTTCCAGAAGGGCTCGAAC
CTGAAAATCGTGAATGCAACGTGGTGGTAACTTCATCTGTTATTCTTACT
ACTGTAGATGGTAGGTGCTATCTGGCAGAGAGAGTGTGCGGGCAGCGGAA
AAAAAAATGA

Synonyms

The feature 'Ec-00_004140.2' has the following synonyms


Synonym
Esi329_0036
Esi_329_0036