Ec-00_004130.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_004130.1
Unique NameEc-00_004130.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length87
Homology
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BLAST of Ec-00_004130.1 vs. uniprot
Match: D7FRZ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRZ3_ECTSI)

HSP 1 Score: 171 bits (434), Expect = 1.470e-48
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 3 
Query:  774 MSARTFGSYCAGRGQLPTQTSPSSSGQAEAPAALYLQVDSANQRAFSTPALIITSERGYFENNGVRRTDDDVDAHGKQESQLCDGG 1031
            MSARTFGSYCAGRGQLPTQTSPSSSGQAEAPAALYLQVDSANQRAFSTPALIITSERGYFENNGVRRTDDDVDAHGKQESQLCDGG
Sbjct:    1 MSARTFGSYCAGRGQLPTQTSPSSSGQAEAPAALYLQVDSANQRAFSTPALIITSERGYFENNGVRRTDDDVDAHGKQESQLCDGG 86
The following BLAST results are available for this feature:
BLAST of Ec-00_004130.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FRZ3_ECTSI1.470e-48100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:5262748..5265612 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length1554
Hectar predicted targeting categoryother localisation
Gene idEc-00_004130.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_004130Ec-00_004130Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 5262748..5265612 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_004130.1Ec-00_004130.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 5263522..5264644 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_004130.1.1Ec-00_004130.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 5262748..5263555 +
Ec-00_004130.1.2Ec-00_004130.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 5264092..5264227 +
Ec-00_004130.1.3Ec-00_004130.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 5264554..5264658 +
Ec-00_004130.1.4Ec-00_004130.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 5265108..5265612 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0041305UTR:Ec-00_004130.1Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_00 5262748..5263521 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_004130.1CDS:Ec-00_004130.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 5263522..5263555 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0041303UTR:Ec-00_004130.1Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_00 5264645..5264658 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_004130.1 ID=Ec-00_004130.1|Name=Ec-00_004130.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=87bp
MSARTFGSYCAGRGQLPTQTSPSSSGQAEAPAALYLQVDSANQRAFSTPA
LIITSERGYFENNGVRRTDDDVDAHGKQESQLCDGG*
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spliced messenger RNA

>Ec-00_004130.1 ID=Ec-00_004130.1|Name=Ec-00_004130.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1554bp|location=Sequence derived from alignment at chr_00:5262748..5265612+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
GGCCTCAGGCGAGCTTCTGTGGCGGTGAGAACGTACCCTGGCATGTACTG
AGGGGTCAGCTTAGCTTGGCCGTTGCGTTGGGTCTGCCGAGAGATAGAGA
AGCAACTCATCGGTGATCAATTGTATTTTTTTAGAGAATAGCAAGAAAAC
GTGGTGTCGTGTGTGTGTGTGTTTCGCGTACCCTCTCTCTCCCCTCCCGA
CAACACACACCCTCGCACCTGCACCTGCTGCACATCCGTACAGGCCACCC
ATACATGGATGTGGTGAGGATCCAAACGTGAGCACTCCTCCCCTCCTCGG
GGGCTCGTTCCTTCGCGGTAGAGCTGCTCTTCGGCTGTAGTGTGCACGCA
CATCCGAGAGAGCTCGCTGCTGTACCCACCAGACCCACCCGCTCTTTCCG
TTTCTCGGAACGAATAAACCAAAAAGGCACGCACGTGTGTGTGTCCCCAC
AGCCTCGTCCGGGCGGCCACCGCCGTAAACTGCTAACGGGTGATGATCTA
TCTGATGTATTTGGTTGCATTGTTCGAGGTGAGGTAAATAGTGCAGCAGC
ATCCCAACGCCCTCTCCGTGCTGCTCCGTTCGCCCCCAGTCTGATCTGAA
TCGACTCCTTCGACAGCAGCACCTGATCTCACCACGTCACCTCATCAAGC
AGCAAGCAACCACTCGGAGGAACATTTTATCTTTTTGGACAAGCACCCGA
GCCGTGCTCGGCACCCGAGAGAGCAGCGGACAGGGCGTACCCAGTAGCCG
TGAGCGACCTAGGTCTTTGGAGCAATGTCGGCGCGCACCTTTGGTTCATA
CTGTGCTGGGCGAGGGCAACTACCCACACAGACGTCGCCATCAAGCTCCG
GCCAAGCTGAGGCACCTGCTGCATTGTACCTACAAGTGGACTCTGCGAAT
CAGAGAGCCTTTAGTACCCCTGCATTGATCATTACCTCGGAGAGGGGGTA
CTTTGAAAATAACGGCGTGCGACGTACTGATGACGACGTGGATGCTCATG
GAAAGCAAGAATCACAGCTGTGTGATGGGGGGTGATGGGTGATGATGAGC
TTTTAGGAAGTGGGTGAGAAGATATGAGGGCCAACACATCTGACAGAGAA
GGTCATGTTGGGCGAAAGACTTCAAGTTCGCGACACGGCCCGTGCACGTG
ATGGAGAAGAGCCCGGGCCGTGTTTACTGGTGATGCGGCTGCAACAAGGG
TCAACCAAAGCTGGCGGGGATGCGTTGGCTAATAATATGTAGAATTTGTG
GTTGGCGCGCATGAAGCGTTGCGGTGGAGTGCAAAGTATTTGTGGTAATA
ATGTTTGTTCCGCAGTGTGGTAGCATTTATTTGAGGGCAAATGCTGTCAG
GGGTTCATAGTTGAAGATCGTCTGCACGAATGCCGCCCTAGAGGTGGTAG
TAAGAACTTTTGTTATCAGCGGGTGGCGGTACAATAGGGTCAGGACAATT
TCTTCGTCGTTGATGGCTGGCTGCGTCTCGCCTGAGGTAGACCATCATGG
GTTGTTTGAACGTGAGAACAAGTATTAATAGCACTGGGTTAGAGACCCCG
TCTT
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protein sequence of Ec-00_004130.1

>Ec-00_004130.1 ID=Ec-00_004130.1|Name=Ec-00_004130.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=87bp
MSARTFGSYCAGRGQLPTQTSPSSSGQAEAPAALYLQVDSANQRAFSTPA
LIITSERGYFENNGVRRTDDDVDAHGKQESQLCDGG*
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mRNA from alignment at chr_00:5262748..5265612+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_004130.1 ID=Ec-00_004130.1|Name=Ec-00_004130.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2865bp|location=Sequence derived from alignment at chr_00:5262748..5265612+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
GGCCTCAGGCGAGCTTCTGTGGCGGTGAGAACGTACCCTGGCATGTACTG
AGGGGTCAGCTTAGCTTGGCCGTTGCGTTGGGTCTGCCGAGAGATAGAGA
AGCAACTCATCGGTGATCAATTGTATTTTTTTAGAGAATAGCAAGAAAAC
GTGGTGTCGTGTGTGTGTGTGTTTCGCGTACCCTCTCTCTCCCCTCCCGA
CAACACACACCCTCGCACCTGCACCTGCTGCACATCCGTACAGGCCACCC
ATACATGGATGTGGTGAGGATCCAAACGTGAGCACTCCTCCCCTCCTCGG
GGGCTCGTTCCTTCGCGGTAGAGCTGCTCTTCGGCTGTAGTGTGCACGCA
CATCCGAGAGAGCTCGCTGCTGTACCCACCAGACCCACCCGCTCTTTCCG
TTTCTCGGAACGAATAAACCAAAAAGGCACGCACGTGTGTGTGTCCCCAC
AGCCTCGTCCGGGCGGCCACCGCCGTAAACTGCTAACGGGTGATGATCTA
TCTGATGTATTTGGTTGCATTGTTCGAGGTGAGGTAAATAGTGCAGCAGC
ATCCCAACGCCCTCTCCGTGCTGCTCCGTTCGCCCCCAGTCTGATCTGAA
TCGACTCCTTCGACAGCAGCACCTGATCTCACCACGTCACCTCATCAAGC
AGCAAGCAACCACTCGGAGGAACATTTTATCTTTTTGGACAAGCACCCGA
GCCGTGCTCGGCACCCGAGAGAGCAGCGGACAGGGCGTACCCAGTAGCCG
TGAGCGACCTAGGTCTTTGGAGCAATGTCGGCGCGCACCTTTGGTTCATA
CTGTGCTGGTGAGTGGAGAGATAGAGCAAACAGCACCACACAGAAGAGAT
GATATGTATGTAGCTGTGTAAGTAGCAAAGTGCTTGTAGCAGTGTATGCA
AATTCCTTATATGACACAAGATAACACACCCCCTTGACCGATTTTCAAAG
ATCGATTTCTCAACAGCAGGAAGACTCACACCGCCGAAAACGGCGGCGTT
GGAACCGTCTCGTTGAGAGCTTTTGGAAAATGTATCATTTCGTTTATGTA
TCCTCTTCGTCGTCGAGTAATCGATCTTTGAAAATCGGGCCAGGGTGCGT
GTTATCTTGTGTCATATACGGTAGCGCAGTTGTTGCCGACATGTGTAAGA
AGGGTAGGTACCCAGGGTTGACATTCACGTGGATCGGGTGCTTGGGAAGC
GCATTGTGATGTTGTGGTGGCTCGTGCGTGTGCGCTGTGACCGTCCGTTC
TGTTTTCGTTCGTCATATGTCTTCTTCCTCTTTATTATCTCGATGCATGC
CTCTGTGACTGCTCCTCTTCTTCCGTTTGACCTCCTGAGAACAGGGCGAG
GGCAACTACCCACACAGACGTCGCCATCAAGCTCCGGCCAAGCTGAGGCA
CCTGCTGCATTGTACCTACAAGTGGACTCTGCGAATCAGAGAGCCTTTAG
TACCCCTGCATTGATCATTACCTCGGAGAGGCAAGTAACCAACCAAGTGC
AGCCATATCCACGCTGGGATGGATGGGCAATGCGTAGGGCCAAAGTGAAC
GGTCGTTAAGTACGATTGTACATCGTACAACGTATCTATGCATACTGCTG
CTGTCAATGGTGGTGCCCCGCTTGATGTTCTCCTTGGGGATTAGATGGCC
GTCAAGCACGAAGGTGTTTCTGCTGTGCATTGCGTAGTACAGTGCGTCCC
GCGTTGCGATGAAGCTGGTGGTGTTGTTTTTCTTGACTCCGCCGCCGGTC
GCTGCTGCTCATGCTACTATTTTCTGCTGCTGCCGCTCCTGCTCTTCGCT
CTAAAGGGGGTACTTTGAAAATAACGGCGTGCGACGTACTGATGACGACG
TGGATGCTCATGGAAAGCAAGAATCACAGCTGTGTGATGGGGGGTGATGG
GTGATGATGAGGTAGGTGCGGTTGTTTCCTAGCGTATTATTAGTCTATGT
GGCCGTGGACAGCAGTTTCACGGGCATCCATTTTTTGTTGATGCTGTATG
TCGTGAGACGAAGGAGGTGGATGCATGAGTGTCGTGTGTAGTCCAGAGGA
GGCGTTTACATCACCCTCTACAAGGCGATGTTCTTGTACTAGTTGCCGCT
CGCCCAGGAACACTTTTCCATCTTAAAATGCGCCGCGAGACTTTTTGTTG
TGGTACCTTGAGGGATGGTACGAAAGTGACGGTGTTGTTGTGAAGACATG
CAGCCTGTTAACAACATCGGCACGCTTCCTCGCTTTTCCTACTCTTGATT
TCGTACTAGTGAGCAGTGGTCGCCGTGCGTATTATGCATAGGAATTGAAA
ACTTGTTGCTTCCCTTCCGCCCGGCCCGCCTACTCTCCCTTGATCACGAA
CATCGCGAAGCTTTTAGGAAGTGGGTGAGAAGATATGAGGGCCAACACAT
CTGACAGAGAAGGTCATGTTGGGCGAAAGACTTCAAGTTCGCGACACGGC
CCGTGCACGTGATGGAGAAGAGCCCGGGCCGTGTTTACTGGTGATGCGGC
TGCAACAAGGGTCAACCAAAGCTGGCGGGGATGCGTTGGCTAATAATATG
TAGAATTTGTGGTTGGCGCGCATGAAGCGTTGCGGTGGAGTGCAAAGTAT
TTGTGGTAATAATGTTTGTTCCGCAGTGTGGTAGCATTTATTTGAGGGCA
AATGCTGTCAGGGGTTCATAGTTGAAGATCGTCTGCACGAATGCCGCCCT
AGAGGTGGTAGTAAGAACTTTTGTTATCAGCGGGTGGCGGTACAATAGGG
TCAGGACAATTTCTTCGTCGTTGATGGCTGGCTGCGTCTCGCCTGAGGTA
GACCATCATGGGTTGTTTGAACGTGAGAACAAGTATTAATAGCACTGGGT
TAGAGACCCCGTCTT
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Coding sequence (CDS) from alignment at chr_00:5262748..5265612+

>Ec-00_004130.1 ID=Ec-00_004130.1|Name=Ec-00_004130.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=261bp|location=Sequence derived from alignment at chr_00:5262748..5265612+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTCGGCGCGCACCTTTGGTTCATACTGTGCTGGGCGAGGGCAACTACC
CACACAGACGTCGCCATCAAGCTCCGGCCAAGCTGAGGCACCTGCTGCAT
TGTACCTACAAGTGGACTCTGCGAATCAGAGAGCCTTTAGTACCCCTGCA
TTGATCATTACCTCGGAGAGGGGGTACTTTGAAAATAACGGCGTGCGACG
TACTGATGACGACGTGGATGCTCATGGAAAGCAAGAATCACAGCTGTGTG
ATGGGGGGTGA
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Synonyms
The feature 'Ec-00_004130.1' has the following synonyms
Synonym
Esi0325_0035
Esi_0325_0035