Ec-00_004120.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_004120.1
Unique NameEc-00_004120.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length202
Homology
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BLAST of Ec-00_004120.1 vs. uniprot
Match: D7FZL3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZL3_ECTSI)

HSP 1 Score: 234 bits (597), Expect = 1.410e-76
Identity = 116/120 (96.67%), Postives = 118/120 (98.33%), Query Frame = 1 
Query:  244 MREWNEAHLALKRTRKQGRAKVSLIQSKVKSKDGTITYPLVPRCSFPTANKWHLELDAVNVCHDTTCCDESTPWDEATEKHPAPNTPKAKRVRKKSSNAKRVAGAGGKRGGEGKVEGCSG 603
            MREWNEAHLALKRTRKQGRAKVSLIQSKVKSKDGTITYPLVP CSFPTAN+WHL+LDAVNVCHDTTCCDESTPWDEATEKHPAPNTPK KRVRKKSSNAKRVAGAGGKRGGEGKVEGCSG
Sbjct:    1 MREWNEAHLALKRTRKQGRAKVSLIQSKVKSKDGTITYPLVPGCSFPTANRWHLKLDAVNVCHDTTCCDESTPWDEATEKHPAPNTPKPKRVRKKSSNAKRVAGAGGKRGGEGKVEGCSG 120
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BLAST of Ec-00_004120.1 vs. uniprot
Match: D7FZL2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZL2_ECTSI)

HSP 1 Score: 72.0 bits (175), Expect = 2.990e-11
Identity = 39/41 (95.12%), Postives = 40/41 (97.56%), Query Frame = 1 
Query:    1 MQMMQRIQGGGSSSGTVRDASSESDSDSASVDLTANKGHPA 123
            MQMMQR+QGGGSSSGTVRDASSESDSDSASVD TANKGHPA
Sbjct:  446 MQMMQRLQGGGSSSGTVRDASSESDSDSASVDSTANKGHPA 486
[Close]
BLAST of Ec-00_004120.1 vs. uniprot
Match: D7FHM3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHM3_ECTSI)

HSP 1 Score: 65.9 bits (159), Expect = 3.870e-9
Identity = 38/87 (43.68%), Postives = 52/87 (59.77%), Query Frame = 1 
Query:  232 TVKDMREWNEAHLALKRTRKQG-RAKVSLIQSKVKSKDGTITYPLVPRCSFPTANKWHLELDAVNVCHDTTCCDESTPWDEATEKHP 489
            ++K MREW  A   L+ TR +G  A ++ IQ+  K KDG +   LV     PTA +W L+L AV+VCHD TCC E+    +A + HP
Sbjct:  361 SLKVMREWRAALHRLRLTRIEGVNASITTIQNDSKDKDGNVVKALVGN-PMPTAKRWLLQLAAVDVCHDDTCCPETKLLKDAVKTHP 446
The following BLAST results are available for this feature:
BLAST of Ec-00_004120.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FZL3_ECTSI1.410e-7696.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FZL2_ECTSI2.990e-1195.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FHM3_ECTSI3.870e-943.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:5180374..5182891 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length606
Hectar predicted targeting categoryother localisation
Gene idEc-00_004120.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_004120Ec-00_004120Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 5180374..5182891 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_004120.1.3Ec-00_004120.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 5180374..5180584 -
Ec-00_004120.1.2Ec-00_004120.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 5180957..5181227 -
Ec-00_004120.1.1Ec-00_004120.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 5182768..5182891 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_004120.1CDS:Ec-00_004120.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 5180374..5180584 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_004120.1Ec-00_004120.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 5180374..5182891 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_004120.1 ID=Ec-00_004120.1|Name=Ec-00_004120.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=202bp
MQMMQRIQGGGSSSGTVRDASSESDSDSASVDLTANKGHPADENEDVSPS
LDDSILGDDPELEHFRECVNACKFGACTVKDMREWNEAHLALKRTRKQGR
AKVSLIQSKVKSKDGTITYPLVPRCSFPTANKWHLELDAVNVCHDTTCCD
ESTPWDEATEKHPAPNTPKAKRVRKKSSNAKRVAGAGGKRGGEGKVEGCS
G*
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spliced messenger RNA

>Ec-00_004120.1 ID=Ec-00_004120.1|Name=Ec-00_004120.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=606bp|location=Sequence derived from alignment at chr_00:5180374..5182891- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAAATGATGCAACGTATACAAGGCGGGGGGAGCTCCTCGGGAACCGT
ACGTGACGCGTCATCCGAATCGGATTCGGACTCGGCCTCGGTCGATTTGA
CGGCCAACAAGGGACATCCAGCTGACGAGAACGAAGATGTGAGCCCCTCT
CTCGACGACTCGATCTTAGGTGATGATCCGGAGCTGGAGCATTTCCGCGA
ATGTGTCAACGCCTGTAAGTTTGGCGCGTGCACCGTCAAGGATATGCGCG
AGTGGAACGAGGCGCACCTGGCTCTGAAGCGGACGCGTAAGCAAGGACGG
GCCAAGGTCTCCCTCATCCAGAGCAAGGTCAAGAGCAAGGACGGCACCAT
TACGTACCCTCTGGTTCCTCGATGCAGTTTCCCTACTGCAAACAAGTGGC
ACTTGGAGCTGGACGCGGTTAACGTCTGCCACGACACCACATGCTGTGAC
GAATCAACCCCGTGGGACGAGGCCACGGAAAAACACCCCGCCCCCAACAC
CCCTAAAGCCAAGAGGGTCCGCAAGAAGTCCAGCAACGCCAAACGGGTGG
CGGGTGCGGGCGGTAAAAGGGGAGGGGAGGGGAAGGTGGAAGGATGCTCC
GGCTGA
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protein sequence of Ec-00_004120.1

>Ec-00_004120.1 ID=Ec-00_004120.1|Name=Ec-00_004120.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=202bp
MQMMQRIQGGGSSSGTVRDASSESDSDSASVDLTANKGHPADENEDVSPS
LDDSILGDDPELEHFRECVNACKFGACTVKDMREWNEAHLALKRTRKQGR
AKVSLIQSKVKSKDGTITYPLVPRCSFPTANKWHLELDAVNVCHDTTCCD
ESTPWDEATEKHPAPNTPKAKRVRKKSSNAKRVAGAGGKRGGEGKVEGCS
G*
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mRNA from alignment at chr_00:5180374..5182891-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_004120.1 ID=Ec-00_004120.1|Name=Ec-00_004120.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2518bp|location=Sequence derived from alignment at chr_00:5180374..5182891- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCAAATGATGCAACGTATACAAGGCGGGGGGAGCTCCTCGGGAACCGT
ACGTGACGCGTCATCCGAATCGGATTCGGACTCGGCCTCGGTCGATTTGA
CGGCCAACAAGGGACATCCAGCTGGTGAGAGGTAGACCTTGGAACACAAC
TGCAATACGACCTTATGAGTAGTGTCATGTTTCGGCGAGTTGTCTAGGGT
AACCCACACTATTTGGCAAATGGAACAAGCTTCCGTGGAAGTCGAAATTG
ACTTCCATGGAATCCGTTCGCCTGTTTCATGAATTGACTTCCATGGAAGT
CAAGTAGACTTCCATGGAATATGTTCGCCTGTTTCGGGAATTGACTTCCA
TGGAAGTCAAATAGACTTGCATGGAATATGTTCGCCTGTTTCGGGTTACA
GCTTCCATGATGCTTCCATGGAAGCGATGAACAACTTCCATGGATGTTAA
TCCGTTTCCATGGAAGGACCCGATAGCAACCGCTCGTTGCTTCCATGGAA
TTTGCATTTCGGACTTCTAACGAACCTCGACGAACTTTCGGAGAAGTACT
ACGTTCATGGAGGCTCGGCGCCTGACAGAGTCTCTGCTACTTCCATGGCA
GCCCGAAAACTCCCATGAAAGCATCTTCCATGGAAGTTGGTGACAGAGGT
CGAAACCGACTTCCGTGGTGACACAGAAAATTCCATGAAGGCAACTTCCA
CCGAAGCGTCTGGAGATGTTTTCATTTCGGCTTCCCTACCCTAACCCTCA
CCCTGATAAGACGCCGTGGAAGTTAACCCGAGGTTGAATACTCCCATGGA
TGCTGCCATAATCCTGTTTTGAATAGCTTCCATGAAAGACTAACGTTCAA
CTTCCATGGAAGCTATTTCACTTCCATGGGGGTCGAATGGTTCTTCCGTG
GAAGCTAACTGCCGTGAAAGTGGCGCATCGGTGTTCCAAATCTTCTGTGC
CATGGAAGTTACTATCGCTTCTATGGAAGTGCCGTCTCGCGCTTCCATGG
TACAGATATCAGCTTCCTTGGAATTATATTCAACTTCCATGGAAGCTGCT
TTATACTTCCATGAAAGCGATACACCTTTGTAAAACAATGTGGGAGATCG
GTAGCGTACTATCTCCTATGGACCTGGGGCATTATGTTTCTACGAGCACT
CTCACCCGTGTCCCGAAGCTGTCGCGATTTTTGTTCGACATCCGGTCGTG
TGTTCAGGGCGTCAAGCCTCTGTTGTAATTGTTTTCGCGCCTTTGACTAC
ACTGCGTTGCGAAGTTGTTCCATAAGATCGAAAACCACACGCCAAAGTCA
TCAAGATACACGCCTCAGTAGGGGATATATCGACGACGTTCACCTTGTGT
AACAATGTTGTTTTCTGAGACTTTTCCGCCAGCAGTTCCCGTTTGCAAGT
AAGCCACCACTTTCTTTTTTTTTCGGAAATGAACGCTTTGAGCTGAGCTG
GCGTACTCGCCGTGCCTAATACACCCTCGCAAAGCTCTAACCCGCGAGTG
ACCTAAAATAGTTCGTCAGTTTCGAACAGTTTTCCGGCTGGACGCTAGCG
TGTCGACGCCTGTAGTGGTTCCCCCCGCCAAACGCCGCTAACCCGTTCAC
GTACACTCACGACTGTCCTTTCCCGTGTCTCCGAATGCCCTTGTTCTGAT
TTGTGTACAATAAGACGAGAACGAAGATGTGAGCCCCTCTCTCGACGACT
CGATCTTAGGTGATGATCCGGAGCTGGAGCATTTCCGCGAATGTGTCAAC
GCCTGTAAGTTTGGCGCGTGCACCGTCAAGGATATGCGCGAGTGGAACGA
GGCGCACCTGGCTCTGAAGCGGACGCGTAAGCAAGGACGGGCCAAGGTCT
CCCTCATCCAGAGCAAGGTCAAGAGCAAGGACGGCACCATTACGTACCCT
CTGGTTCCTCGATGCAGTTTCCCTACTGCAAACAAGTACGTGCGGTGTAC
ATTCGTATACAGGGCAACCGTTCGATTGTGCTGTTCCCGTATTTTCGCGC
CCACCCGGATTTTCGTTGGGCCCACCTCATTAGGACTCGCTCAGTGCGGT
GTTGCCGTCCACGGTAGGTAACAGACGCTGCGAAGTACCCCTTTAGCCAG
AGGTTTTATTTTTAATTTCCCAACACTATTTCACGTTCTGCGACAACATC
GACGGCATTCTGTGATTGCGAGTTGCGGTTCATGGTTGTCAGTGACAAAA
GGACGACTTCGTTCATTTACATGTACATTGGTGTGACTGGTGGATGGTTA
GTTTACCCTTGTTTCCCTATCTCCGGCGTCGATTTTAAATACCCTTGTTT
CCCCCAGGTGGCACTTGGAGCTGGACGCGGTTAACGTCTGCCACGACACC
ACATGCTGTGACGAATCAACCCCGTGGGACGAGGCCACGGAAAAACACCC
CGCCCCCAACACCCCTAAAGCCAAGAGGGTCCGCAAGAAGTCCAGCAACG
CCAAACGGGTGGCGGGTGCGGGCGGTAAAAGGGGAGGGGAGGGGAAGGTG
GAAGGATGCTCCGGCTGA
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Coding sequence (CDS) from alignment at chr_00:5180374..5182891-

>Ec-00_004120.1 ID=Ec-00_004120.1|Name=Ec-00_004120.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=606bp|location=Sequence derived from alignment at chr_00:5180374..5182891- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCAAATGATGCAACGTATACAAGGCGGGGGGAGCTCCTCGGGAACCGT
ACGTGACGCGTCATCCGAATCGGATTCGGACTCGGCCTCGGTCGATTTGA
CGGCCAACAAGGGACATCCAGCTGACGAGAACGAAGATGTGAGCCCCTCT
CTCGACGACTCGATCTTAGGTGATGATCCGGAGCTGGAGCATTTCCGCGA
ATGTGTCAACGCCTGTAAGTTTGGCGCGTGCACCGTCAAGGATATGCGCG
AGTGGAACGAGGCGCACCTGGCTCTGAAGCGGACGCGTAAGCAAGGACGG
GCCAAGGTCTCCCTCATCCAGAGCAAGGTCAAGAGCAAGGACGGCACCAT
TACGTACCCTCTGGTTCCTCGATGCAGTTTCCCTACTGCAAACAAGTGGC
ACTTGGAGCTGGACGCGGTTAACGTCTGCCACGACACCACATGCTGTGAC
GAATCAACCCCGTGGGACGAGGCCACGGAAAAACACCCCGCCCCCAACAC
CCCTAAAGCCAAGAGGGTCCGCAAGAAGTCCAGCAACGCCAAACGGGTGG
CGGGTGCGGGCGGTAAAAGGGGAGGGGAGGGGAAGGTGGAAGGATGCTCC
GGCTGA
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Synonyms
The feature 'Ec-00_004120.1' has the following synonyms
Synonym
Esi325_0039
Esi_325_0039