Ec-00_004100.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_004100.1
Unique NameEc-00_004100.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length170
Homology
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BLAST of Ec-00_004100.1 vs. uniprot
Match: D7FXD2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXD2_ECTSI)

HSP 1 Score: 320 bits (820), Expect = 2.190e-110
Identity = 152/154 (98.70%), Postives = 154/154 (100.00%), Query Frame = 1 
Query:    1 MAPYAYAFVGDEKKAFSGGRAPTPDNNAFLAAVRFLWPGARDANSHFPADFITATTTARVSIHQDARMACAHIIEGMLDLEQEEHHPETITDLWRGVRNRITTIEAESTAMEGLWHRVFTRFIKGHQGNTRKEWSLARLVREPRALADFVAEIV 462
            MAPYAYAFVGDEKKAFSGGRAPTPDNNAFLAAVRFLWPGARDANSHFPADFITATTTARVSIHQDARMACAHIIEGMLDLEQEEHHPETITDLWRGVRNRITTIEAESTAMEGLWHRVFTRFIKGHQGNTRKEWSLARLVREPRALADFVAE++
Sbjct:    1 MAPYAYAFVGDEKKAFSGGRAPTPDNNAFLAAVRFLWPGARDANSHFPADFITATTTARVSIHQDARMACAHIIEGMLDLEQEEHHPETITDLWRGVRNRITTIEAESTAMEGLWHRVFTRFIKGHQGNTRKEWSLARLVREPRALADFVAEVI 154
The following BLAST results are available for this feature:
BLAST of Ec-00_004100.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FXD2_ECTSI2.190e-11098.70Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:5112872..5115270 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length510
Hectar predicted targeting categoryother localisation
Gene idEc-00_004100.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_004100Ec-00_004100Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 5112872..5115270 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_004100.1.1Ec-00_004100.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 5112872..5113016 +
Ec-00_004100.1.2Ec-00_004100.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 5113662..5113843 +
Ec-00_004100.1.3Ec-00_004100.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 5114367..5114495 +
Ec-00_004100.1.4Ec-00_004100.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 5115217..5115270 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_004100.1CDS:Ec-00_004100.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 5112872..5113016 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_004100.1Ec-00_004100.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 5112872..5115270 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_004100.1 ID=Ec-00_004100.1|Name=Ec-00_004100.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=170bp
MAPYAYAFVGDEKKAFSGGRAPTPDNNAFLAAVRFLWPGARDANSHFPAD
FITATTTARVSIHQDARMACAHIIEGMLDLEQEEHHPETITDLWRGVRNR
ITTIEAESTAMEGLWHRVFTRFIKGHQGNTRKEWSLARLVREPRALADFV
AEIVKFLCPYAVTSGATKR*
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spliced messenger RNA

>Ec-00_004100.1 ID=Ec-00_004100.1|Name=Ec-00_004100.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=510bp|location=Sequence derived from alignment at chr_00:5112872..5115270+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCCCTACGCATATGCCTTCGTCGGGGACGAAAAGAAGGCGTTCTC
GGGCGGACGAGCTCCCACCCCCGACAACAACGCGTTCCTGGCAGCCGTCC
GATTCTTGTGGCCGGGTGCCAGGGACGCGAACTCACATTTCCCAGCTGAT
TTCATCACCGCCACCACCACCGCGCGGGTTAGCATCCACCAAGACGCCCG
GATGGCTTGCGCGCACATCATCGAGGGGATGCTCGACCTGGAGCAAGAGG
AGCACCACCCGGAGACAATCACCGACCTCTGGCGCGGGGTCCGGAACCGC
ATCACTACAATCGAGGCGGAGTCGACGGCCATGGAGGGCCTATGGCACCG
GGTCTTCACCCGCTTTATCAAAGGGCACCAAGGCAACACGCGCAAGGAGT
GGAGCCTCGCACGCCTGGTGCGAGAACCGCGAGCGCTCGCGGACTTCGTC
GCGGAGATCGTCAAGTTCCTGTGCCCGTACGCCGTCACCTCAGGTGCAAC
AAAACGTTAG
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protein sequence of Ec-00_004100.1

>Ec-00_004100.1 ID=Ec-00_004100.1|Name=Ec-00_004100.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=170bp
MAPYAYAFVGDEKKAFSGGRAPTPDNNAFLAAVRFLWPGARDANSHFPAD
FITATTTARVSIHQDARMACAHIIEGMLDLEQEEHHPETITDLWRGVRNR
ITTIEAESTAMEGLWHRVFTRFIKGHQGNTRKEWSLARLVREPRALADFV
AEIVKFLCPYAVTSGATKR*
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mRNA from alignment at chr_00:5112872..5115270+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_004100.1 ID=Ec-00_004100.1|Name=Ec-00_004100.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2399bp|location=Sequence derived from alignment at chr_00:5112872..5115270+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGCGCCCTACGCATATGCCTTCGTCGGGGACGAAAAGAAGGCGTTCTC
GGGCGGACGAGCTCCCACCCCCGACAACAACGCGTTCCTGGCAGCCGTCC
GATTCTTGTGGCCGGGTGCCAGGGACGCGAACTCACATTTCCCAGGTTCG
GGTGGATTGATGACATGTTGTTTCTTCTAGAGGTGAACAAAGTCACGCGT
AGAGAGGTACTTCGCGCAGGCACACACCTGCCCTCTATTTACCGGGTGGT
TTATGCCGTATCTGGTTGACGTTCTTCGTCGCCAACCAGTCTTGTGCATG
TAGATATCTACAGGCACACGCGCTCGCTCATGACATCGAGACCAATGGCA
AGCACGGGCGTGTACCCACGCGCCTAGATACATCCATCCATATTCAGGGT
TCTGGATGATTCGTCAGCCATATGCGTAGAAAAGACAACCACAAGACGTG
CTCCATAAACAATTTTCGGACTTGCACTTGGTGCAAGTGGTACTGTCAGA
CGTAGTGAAACGCAGTCAAATTCCGTTGTTGTCCCGCCAGTTAGTTGTGT
GCATTCGAAAGAACGCCATCAGTCGTGTTTTTGCGAAATCATGTTACGCC
TACTATATACACTCGTGTTTGTCGTGCTGCATTTATAGAAGTCCCTCGAA
ACCTCTTGGTGAATGGTCGCATGTCCTGCAACACGGTGACGTGCAGATAT
CTTCCGGATGAGGACTTGCACCCATTTTTTCTCGAATACATGACTCATTG
CCTTTCTTGTCTCCGTTTACACGCGTTGATGTCGCCCCAGCTGATTTCAT
CACCGCCACCACCACCGCGCGGGTTAGCATCCACCAAGACGCCCGGATGG
CTTGCGCGCACATCATCGAGGGGATGCTCGACCTGGAGCAAGAGGAGCAC
CACCCGGAGACAATCACCGACCTCTGGCGCGGGGTCCGGAACCGCATCAC
TACAATCGAGGCGGAGTCGACGGTAACCGTTGTCGTCCAATATACCCTGG
TCGCCGTTTGCGGAAACGTAGCTCACATTGTTCAAATCCGGCGTTCACGT
GCTATTTATGTAGCACGCAGCGTGTGTGCGATGCACGCTTTCGCGAGTCT
CTCAGGGTACTGCCCCCGAGCCTCTTAGTTGCAGCGGAGCGGTTGTGGGG
GCGGCGGGGATGATCAATGCACGGACAGTGTACTGTTCTAGGACATTTCA
CAATCCCGGGCGTTGCTTGTAAACGTACCCGACAGAGGACCTGTGCACCC
CATTGCATGTTTTCTGTGACGCGGATATTTTGTGCTGGCTACCCTCCGTC
GGTGGCGGCGACCAACGTTTATCGACGATCCTACAAGGCCGTTCCCACGG
CGAAAAATAACACATATAGCTGTGTTATGTCCCCAGTCGACTGCGCTCTG
TTATTCCTACAACATTTTGGTGCGTTCCCTCGCTTCTTGAAGCCGTATAT
ATGCAAAATTGTGTGAGTGACTACACGTTTACGTTTGTATTGCAGGCCAT
GGAGGGCCTATGGCACCGGGTCTTCACCCGCTTTATCAAAGGGCACCAAG
GCAACACGCGCAAGGAGTGGAGCCTCGCACGCCTGGTGCGAGAACCGCGA
GCGCTCGCGGACTTCGTCGCGGAGGTGATTACCATGTACAATCGCGTCGA
ACAGGATGCGTCCCATCGACGCGTTTAGACAACAGTTCGATTGCTGTATG
ACACCGCAATATTAGTGTCCGCGTACCACGTGCGAAGTACTTATACGTAG
CTTGGCTCACTTGCTGACCCACTTGTGTGCTCACCTTTTCTGCATGTAGT
TTGCGACTCCTATGCTCCTTCACGCGGTCCGCGACATGGAGTTTCTGCGT
GTGTCCGAGATCGGCACGCACGAGTCGGCGACGTCCAGGGCCCTAAGGCA
GATGCGGTCTTGGTCGAGGTTAATAAACGGTGGATTCCCCGACCGTCAAG
CTAGGGCTTTCCAGGAGAGGTGAACATTTTTGCTGATGTTGTGTTGCGAT
GAAAGAATAAATACTCTGGCTGGTTTGTCTTGTTTTAGTCCTCCCACTAT
AAAGAATTAGCTGCCTGCTCCCGTGCGTACATGTAGCAAACGCACCGATA
CTTTAGGCCAACCTTATTTCTAGCTTGACCAAGCCCAGGGCATTGTCCAT
ATGTTCGTGATCACACTCCTTTGTGGCTTTCAGACGTTGCTCGACAGCAT
CTCGTCTGTCGCCCTATCCGACGACCCGTGTACTGTGTTTTACCTTGCCA
GCATGTGGCGCCAGCTGTTCCATTATCTCACGGGACCCCGCCGCCACGGG
CACGCCCTCCGGACGCTCTCCCACTGGGATTACGACAACCCCAAGATCGT
CAAGTTCCTGTGCCCGTACGCCGTCACCTCAGGTGCAACAAAACGTTAG
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Coding sequence (CDS) from alignment at chr_00:5112872..5115270+

>Ec-00_004100.1 ID=Ec-00_004100.1|Name=Ec-00_004100.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=510bp|location=Sequence derived from alignment at chr_00:5112872..5115270+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGCGCCCTACGCATATGCCTTCGTCGGGGACGAAAAGAAGGCGTTCTC
GGGCGGACGAGCTCCCACCCCCGACAACAACGCGTTCCTGGCAGCCGTCC
GATTCTTGTGGCCGGGTGCCAGGGACGCGAACTCACATTTCCCAGCTGAT
TTCATCACCGCCACCACCACCGCGCGGGTTAGCATCCACCAAGACGCCCG
GATGGCTTGCGCGCACATCATCGAGGGGATGCTCGACCTGGAGCAAGAGG
AGCACCACCCGGAGACAATCACCGACCTCTGGCGCGGGGTCCGGAACCGC
ATCACTACAATCGAGGCGGAGTCGACGGCCATGGAGGGCCTATGGCACCG
GGTCTTCACCCGCTTTATCAAAGGGCACCAAGGCAACACGCGCAAGGAGT
GGAGCCTCGCACGCCTGGTGCGAGAACCGCGAGCGCTCGCGGACTTCGTC
GCGGAGATCGTCAAGTTCCTGTGCCCGTACGCCGTCACCTCAGGTGCAAC
AAAACGTTAG
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Synonyms
The feature 'Ec-00_004100.1' has the following synonyms
Synonym
Esi0325_0004
Esi_0325_0004