Ec-00_004060.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_004060.1
Unique NameEc-00_004060.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length87
Homology
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BLAST of Ec-00_004060.1 vs. uniprot
Match: D7FWX0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWX0_ECTSI)

HSP 1 Score: 124 bits (312), Expect = 3.770e-33
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 1 
Query:    1 MEEEDENVDPRQAVADLVEATSKQAVASSIPEAADAMLDAMNVMEWCPALRSTVLCRLAKDEGLM 195
            MEEEDENVDPRQAVADLVEATSKQAVASSIPEAADAMLDAMNVMEWCPALRSTVLCRLAKDEGLM
Sbjct:    1 MEEEDENVDPRQAVADLVEATSKQAVASSIPEAADAMLDAMNVMEWCPALRSTVLCRLAKDEGLM 65
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BLAST of Ec-00_004060.1 vs. uniprot
Match: D7FUP5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUP5_ECTSI)

HSP 1 Score: 114 bits (285), Expect = 2.700e-27
Identity = 63/69 (91.30%), Postives = 64/69 (92.75%), Query Frame = 1 
Query:    4 EEEDENVDPRQAVADLVE-----ATSKQAVASSIPEAADAMLDAMNVMEWCPALRSTVLCRLAKDEGLM 195
            EEEDENVDPRQAVADLVE     ATSKQAVASSIPEAADAMLDAM+VMEWCPALRSTVLCRLAKDEGLM
Sbjct:   66 EEEDENVDPRQAVADLVESKLRKATSKQAVASSIPEAADAMLDAMHVMEWCPALRSTVLCRLAKDEGLM 134
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BLAST of Ec-00_004060.1 vs. uniprot
Match: A0A6H5KHW0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHW0_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 7.820e-13
Identity = 50/86 (58.14%), Postives = 56/86 (65.12%), Query Frame = 2 
Query:  263 LAVALPAAPVGIPASTLAPVSRVQQSTLALYAGMEDG-------AADIDPHEPSDDGDSDDEFDLVPKSRARYAANSHNAGLNTRG 499
            LAVALPAAPVG+P  T   VS VQQSTLAL+AG ED         + +DP E SDD D D EFD+ P  +  YAANSH  GLN RG
Sbjct:   20 LAVALPAAPVGVPPCTSVYVSLVQQSTLALHAGTEDSELGMEGSGSYVDPKEASDDEDDDAEFDMGPSYKPLYAANSHR-GLNMRG 104
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BLAST of Ec-00_004060.1 vs. uniprot
Match: A0A6H5JAA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAA9_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 5.420e-12
Identity = 40/46 (86.96%), Postives = 41/46 (89.13%), Query Frame = 1 
Query:    1 MEEEDENVDPRQAVADLVEATSKQAVASSIPEAADAMLDAMNVMEW 138
            M E D NVD RQAVADLVEATSKQAVAS IPEAADAMLDAM+VMEW
Sbjct:   66 MGEGDNNVDLRQAVADLVEATSKQAVASCIPEAADAMLDAMHVMEW 111
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BLAST of Ec-00_004060.1 vs. uniprot
Match: A0A6H5L207_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L207_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 1.430e-8
Identity = 49/87 (56.32%), Postives = 53/87 (60.92%), Query Frame = 2 
Query:  263 LAVALPAAPVGIPASTLA-PVSRVQQSTLALYA-------GMEDGAADIDPHEPSDDGDSDDEFDLVPKSRARYAANSHNAGLNTRG 499
            LAVALPAAPV IPA T A  VS  Q ST A+ A       GMED  + IDP  PSDD D D EFD+    +  YAANS  AG NTRG
Sbjct:   22 LAVALPAAPVAIPARTWALAVSLRQPSTYAMNAATEDSELGMEDSGSAIDPSVPSDDED-DCEFDMGASYKPMYAANSLQAGYNTRG 107
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BLAST of Ec-00_004060.1 vs. uniprot
Match: A0A6H5L3F5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3F5_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 2.590e-6
Identity = 24/29 (82.76%), Postives = 27/29 (93.10%), Query Frame = 1 
Query:  109 MLDAMNVMEWCPALRSTVLCRLAKDEGLM 195
            MLDAM+VMEWCPALRS VLCRLAK +G+M
Sbjct:    1 MLDAMHVMEWCPALRSAVLCRLAKAKGVM 29
[Close]
BLAST of Ec-00_004060.1 vs. uniprot
Match: A0A6H5K756_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K756_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 6.560e-6
Identity = 44/87 (50.57%), Postives = 48/87 (55.17%), Query Frame = 2 
Query:  263 LAVALPAAPVGIPASTLA--------PVSRVQQSTLALYAGMEDGAADIDPHEPSDDGDSDDEFDLVPKSRARYAANSHNAGLNTRG 499
            LAVALPAAPV IPA T A        P   V  +T     GMED    IDP   +DD D D EFD+    +  YAANSH AG NTRG
Sbjct:   22 LAVALPAAPVAIPARTSALAVSLRQPPPPAVNAATEDSELGMEDSGYAIDPSVLTDDED-DCEFDMGASYKPIYAANSHKAGHNTRG 107
The following BLAST results are available for this feature:
BLAST of Ec-00_004060.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FWX0_ECTSI3.770e-33100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FUP5_ECTSI2.700e-2791.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KHW0_9PHAE7.820e-1358.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAA9_9PHAE5.420e-1286.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L207_9PHAE1.430e-856.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L3F5_9PHAE2.590e-682.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K756_9PHAE6.560e-650.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:5034697..5037876 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length807
Hectar predicted targeting categoryother localisation
Gene idEc-00_004060.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_004060Ec-00_004060Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 5034697..5037876 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_004060.1.1Ec-00_004060.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 5034697..5034753 +
Ec-00_004060.1.2Ec-00_004060.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 5036714..5036851 +
Ec-00_004060.1.3Ec-00_004060.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 5037265..5037876 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_004060.1CDS:Ec-00_004060.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 5034697..5034753 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0040603UTR:Ec-00_004060.1Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_00 5037331..5037876 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_004060.1Ec-00_004060.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 5034697..5037330 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_004060.1 ID=Ec-00_004060.1|Name=Ec-00_004060.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=87bp
MEEEDENVDPRQAVADLVEATSKQAVASSIPEAADAMLDAMNVMEWCPAL
RSTVLCRLAKDEGLMRSWGGIYAPRGLPCLSGRRCW*
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spliced messenger RNA

>Ec-00_004060.1 ID=Ec-00_004060.1|Name=Ec-00_004060.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=807bp|location=Sequence derived from alignment at chr_00:5034697..5037876+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGAGGAGGACGAGAACGTCGACCCCCGACAGGCCGTCGCGGATCT
AGTGGAGGCGACGTCAAAGCAAGCAGTTGCCTCTTCTATCCCTGAGGCCG
CCGACGCCATGTTGGACGCCATGAACGTCATGGAGTGGTGCCCGGCGCTA
CGTTCGACAGTGCTTTGCCGCCTGGCCAAAGACGAAGGCCTGATGAGGTC
ATGGGGAGGCATCTACGCCCCGCGTGGTCTGCCCTGTCTATCTGGGCGGC
GTTGTTGGTAGCGCTTGCGGTTGCACTACCAGCAGCGCCAGTTGGCATTC
CTGCTTCTACATTGGCGCCCGTCTCCCGCGTGCAGCAGTCCACACTCGCT
TTGTACGCTGGCATGGAGGACGGCGCGGCTGACATCGACCCACATGAGCC
TAGCGATGATGGGGATTCAGACGACGAGTTTGATCTAGTCCCCAAGTCCC
GAGCGCGGTATGCTGCAAACTCGCACAACGCTGGTCTCAACACGAGGGGG
CAGCTCGGCACCATCAACAACAGCGGCAGCAGCACCCCACCCCAGCATCA
CCGGTCACGCCGCCGGCTCGGACGGCCACGCGTGAGCGGCGACAACCGAT
GCATCTGCGGATAGCGGAGTCGAAGCGGCAAGCGCGGGAGGCAGCAGAGC
GGGGGCAGCAGCAGTGGGAGCAGCAGCAGTGGGAGCAGCAGCAGCAACCA
TCACCGGAGCCTGCTCCAGCCAACAGCTCAAACTCGCAACAACAACAGAC
CCCGGCACGACCGTTGACGGAGCTGCTCCGGACAACGTCGCGTGAGCCGC
AACAGCA
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protein sequence of Ec-00_004060.1

>Ec-00_004060.1 ID=Ec-00_004060.1|Name=Ec-00_004060.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=87bp
MEEEDENVDPRQAVADLVEATSKQAVASSIPEAADAMLDAMNVMEWCPAL
RSTVLCRLAKDEGLMRSWGGIYAPRGLPCLSGRRCW*
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mRNA from alignment at chr_00:5034697..5037876+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_004060.1 ID=Ec-00_004060.1|Name=Ec-00_004060.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=3180bp|location=Sequence derived from alignment at chr_00:5034697..5037876+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGAAGAGGAGGACGAGAACGTCGACCCCCGACAGGCCGTCGCGGATCT
AGTGGAGGTGAGAACTCGGGCGTTAGAGCACACATCTCGCACACAGTCTC
CGATTACTGTACAATAGTTCTAGTCAAGTGCATGTCGTGCTCTTGTCCCA
GTATCATGCGTGGCTCGCTGCAGGCCACACGCTGAACTGTTCATCAGCCA
GGGCTGAAGTCTGAAACCCCGACGTTCTCCTGCTGCTATATCCCACCGAT
CTCCCTATCCATGTAGCATGATGTGCGACTGCCGGCCTTTCCCGTGTTCC
TTCTCCGATCTCAATCGCTAGCATCTGCGCCTCCTGTCCACACAACCCTT
GTTGGAAACAAATTCGAGAGACTCCATCTTCTTAAAAGCAACAATTAAAA
TTCCAATGTAGCGGCGGTTGTAGCAGTAGAAGTCAATAACTCAAGTCTAC
GTACAGTACAACATCCCGGAGAATTTTAGAATTTTGATTCGTGTGCTGTG
ACACCCGTTTGCTTTGTTGTCCCCTGTTTGCCGGCGTTGACACACGCGCG
CGGGGGGGGGGAGGTGCAAGCACGGCTCTACATTTTCGTCGCCGAAACTT
ATCTCCTCTCCGTATTTCTTACCGCACAAGCCTCTGCTCCGTGACACTCC
AGTCCTCACGAGATCAACAGGACCACTTCGACCCTAGTTGCAGTACACAA
CCTACAAGTACCTGGTTGTTGGTTTGCTGTTGCATGGCGTATCAGCCACA
CATTCCATTCTAGACTACACCTACAACGCATTCTCAAGAGCCTCGTTCCT
GTTGCTCTTCTGCGTGGGCTATGACCTTCAAGCAGCCGGCCTTTCGCCCT
TTCGCCTCGACGACGTTTCCACCTCGTCTCATCCTTTTATCTTCTCCCTC
GTATGCATAGTACTATGAATACCGTGTGAGCTGAGGTAAATACCCTCAAC
TCTGTGTGAGCTGAGTTCCCAGTATGGCGAGGTGGAATATGCCTACCACC
GGAGGCAGCCTAGTTTCCTCTGTTGAGATGTGACGAGGAATGTCAAGCGG
TGACCGAGCGTGCTCGGTCAAGGCTAGGGTAAGGTTGCGAGTAGGCGTTG
GCCGAGACCCTTCTTGGCTCTCGGTACCAACCGTAAAGATCCACCACGAC
TCCTGTCGGAGCAAAGAATGGAGTACAGTAGTAAATGACCCAAAAGCAGA
GCGATGAGTTATCGTCTGTCGAAGGTTCTTTACTCCCTTCGTATGTGTGT
GTGTAAGTTATAAGAAGATACGAATATAAGAAGAAACGAATATCCTGGCT
TCCACAGTACTGATGTAAGCCCAAATGGATACTCTCTGGGGACACGGCTC
TCAAATTGCCTGTGTGCCGCGCCGTGGTCGTCACCATGCTCCGCTGCGTG
AAATGTATGTCGGAAACCTTTGCCTAATGTGCATAGCATGTTTGTGGAGG
CGATACGCTGTGTCGGTACTGCTTTGTAATACCTGTGTGTTGTGGGCCTC
TCCTGGGGCCCTCTGACTTGTTGTACACAGATCCGAAAGCCGCGGGTCCC
CTTATTCGTAAAACTGCTCCTGTGCATACTTTGTACACATAGCATGCAGC
AGTAGTACTGCTAAAATCTGGCTGACTGGCTTCAGCAACACTTTCCACAC
TGGAGCCAAGTCAGGACTGTACAGAATCTCCCCAGTGATGGGACGCGATT
TATTGATGACCCATGACCTGGCACTGACTGCCTACTACGAGGGTTTATCT
TAACCCTTCTGGTACACAGAAGGCTTTTTTATGGCACGTTCCCTCCTCGA
CCGCTGCGACACTTGAGACCGCTTTATGTCTCTCGCCCGCCCCCCCCTTC
GAGCTGGACGGGAAAGGTATGGCCTATAATATCAAACTAGCAGACTCCGC
GGTTTACTTCGTGCGTGTGACGCAGGTCACACGGCCTCCCTTCCTTCATC
CACAGCACACGATCTAACATCCACGTGCCTGCCCCGATGTGTCTGCTTGT
TGTCGAAATTGCGGAAGGCGACGTCAAAGCAAGCAGTTGCCTCTTCTATC
CCTGAGGCCGCCGACGCCATGTTGGACGCCATGAACGTCATGGAGTGGTG
CCCGGCGCTACGTTCGACAGTGCTTTGCCGCCTGGCCAAAGACGAAGGCC
TGATGGTGAGAGACAACACGTCAAGGCTTTCAACCAATCCGAAGCGTTTG
ACGGAGGAACGAGCCACAATCAATTTGCGGTCCTGACGTGTATATCTCTA
AGTGGTCGGACGAGGGTGTTCTCGAACGTAGATGTCGGATACGAAAGCCA
CCCGCACGTGGGCGCCGGGAATTTATTTCGAAACCTTCTATCGAATCGCC
GTTAACCCTTTGGAGTCTTCGGCCGGTCTGAGAGATCATTGATTGATCAT
TTTATCCATTTTTTTTTTTTTATCGGGCTGAACAGACGGTCTAGTCGTGT
AGGGGAGGATAGGAAAAAAACCCGAACCCGCACGCAGAGGAGTTGTACAG
CACAGCATGCTAAAAGCGAGGGCACGCCACACACACGCCACGCACAAACC
ACGAAAGGATGCGCCGAGAGGTCATGGGGAGGCATCTACGCCCCGCGTGG
TCTGCCCTGTCTATCTGGGCGGCGTTGTTGGTAGCGCTTGCGGTTGCACT
ACCAGCAGCGCCAGTTGGCATTCCTGCTTCTACATTGGCGCCCGTCTCCC
GCGTGCAGCAGTCCACACTCGCTTTGTACGCTGGCATGGAGGACGGCGCG
GCTGACATCGACCCACATGAGCCTAGCGATGATGGGGATTCAGACGACGA
GTTTGATCTAGTCCCCAAGTCCCGAGCGCGGTATGCTGCAAACTCGCACA
ACGCTGGTCTCAACACGAGGGGGCAGCTCGGCACCATCAACAACAGCGGC
AGCAGCACCCCACCCCAGCATCACCGGTCACGCCGCCGGCTCGGACGGCC
ACGCGTGAGCGGCGACAACCGATGCATCTGCGGATAGCGGAGTCGAAGCG
GCAAGCGCGGGAGGCAGCAGAGCGGGGGCAGCAGCAGTGGGAGCAGCAGC
AGTGGGAGCAGCAGCAGCAACCATCACCGGAGCCTGCTCCAGCCAACAGC
TCAAACTCGCAACAACAACAGACCCCGGCACGACCGTTGACGGAGCTGCT
CCGGACAACGTCGCGTGAGCCGCAACAGCA
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Coding sequence (CDS) from alignment at chr_00:5034697..5037876+

>Ec-00_004060.1 ID=Ec-00_004060.1|Name=Ec-00_004060.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=261bp|location=Sequence derived from alignment at chr_00:5034697..5037876+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGAAGAGGAGGACGAGAACGTCGACCCCCGACAGGCCGTCGCGGATCT
AGTGGAGGCGACGTCAAAGCAAGCAGTTGCCTCTTCTATCCCTGAGGCCG
CCGACGCCATGTTGGACGCCATGAACGTCATGGAGTGGTGCCCGGCGCTA
CGTTCGACAGTGCTTTGCCGCCTGGCCAAAGACGAAGGCCTGATGAGGTC
ATGGGGAGGCATCTACGCCCCGCGTGGTCTGCCCTGTCTATCTGGGCGGC
GTTGTTGGTAG
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Synonyms
The feature 'Ec-00_004060.1' has the following synonyms
Synonym
Esi0316_0036
Esi_0316_0036