|
Homology
BLAST of Ec-00_004020.1 vs. uniprot
Match: D7FWW5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWW5_ECTSI) HSP 1 Score: 447 bits (1149), Expect = 4.820e-157 Identity = 254/254 (100.00%), Postives = 254/254 (100.00%), Query Frame = 1
Query: 115 GKDYAFHKSVSKNLWKETIFKPAAEELKNHAAYVAKVGTAHIDELFLSAFGMRKGVGWFRSQRKQASQYVKDHGQTGSSGGKTEKLKVIMRQDLYSKHPAVTKAGMRESFGGLETDSDXXXXXXXXXXXGEGGEVEDAPLNQELWGDLSRHMEDRGDSAANLTAMEEGDDCSALEDDAGDDPPADFGDAGGDCGQDGDSPPEGDGSNDQGGAAGGVLPPPAARGLSKETQEAIEKAEXXXXXXXXXXAEELGRI 876
GKDYAFHKSVSKNLWKETIFKPAAEELKNHAAYVAKVGTAHIDELFLSAFGMRKGVGWFRSQRKQASQYVKDHGQTGSSGGKTEKLKVIMRQDLYSKHPAVTKAGMRESFGGLETDSDXXXXXXXXXXXGEGGEVEDAPLNQELWGDLSRHMEDRGDSAANLTAMEEGDDCSALEDDAGDDPPADFGDAGGDCGQDGDSPPEGDGSNDQGGAAGGVLPPPAARGLSKETQEAIEKAEXXXXXXXXXXAEELGRI
Sbjct: 3 GKDYAFHKSVSKNLWKETIFKPAAEELKNHAAYVAKVGTAHIDELFLSAFGMRKGVGWFRSQRKQASQYVKDHGQTGSSGGKTEKLKVIMRQDLYSKHPAVTKAGMRESFGGLETDSDXXXXXXXXXXXGEGGEVEDAPLNQELWGDLSRHMEDRGDSAANLTAMEEGDDCSALEDDAGDDPPADFGDAGGDCGQDGDSPPEGDGSNDQGGAAGGVLPPPAARGLSKETQEAIEKAEXXXXXXXXXXAEELGRI 256
BLAST of Ec-00_004020.1 vs. uniprot
Match: D7G1B9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1B9_ECTSI) HSP 1 Score: 399 bits (1025), Expect = 6.850e-132 Identity = 216/223 (96.86%), Postives = 219/223 (98.21%), Query Frame = 1
Query: 115 GKDYAFHKSVSKNLWKETIFKPAAEELKNHAAYVAKVGTAHIDELFLSAFGMRKGVGWFRSQRKQASQYVKDHGQTGSSGGKTEKLKVIMRQDLYSKHPAVTKAGMRESFGGLETDSDXXXXXXXXXXXGEGGEVEDAPLNQELWGDLSRHMEDRGDSAANLTAMEEGDDCSALEDDAGDDPPADFGDAGGDCGQDGDSPPEGDGSNDQGGAAGGVLPPPAAR 783
GKDYAFHKSVSKNLWKETIFKPAAEELKNHAAYVAKVGTAHIDELFLSAFGMRKGVGWFRSQRKQASQYVKDHGQ+GS GGKTEKLKVIMRQ+LYS HPAVTKAGMRESFGGLETDSDXXXXXXXXXXXGEGGEVEDAPLNQELWGDLSRH EDRGDSAANLTAMEEGDDCSALED+A DDPPADFGDAGGDCGQDGDSPPEGDGSNDQGGAAGGVLPPPAAR
Sbjct: 364 GKDYAFHKSVSKNLWKETIFKPAAEELKNHAAYVAKVGTAHIDELFLSAFGMRKGVGWFRSQRKQASQYVKDHGQSGSKGGKTEKLKVIMRQELYSNHPAVTKAGMRESFGGLETDSDXXXXXXXXXXXGEGGEVEDAPLNQELWGDLSRHTEDRGDSAANLTAMEEGDDCSALEDEAEDDPPADFGDAGGDCGQDGDSPPEGDGSNDQGGAAGGVLPPPAAR 586
BLAST of Ec-00_004020.1 vs. uniprot
Match: A0A6H5K2Y5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2Y5_9PHAE) HSP 1 Score: 81.6 bits (200), Expect = 9.640e-14 Identity = 46/114 (40.35%), Postives = 64/114 (56.14%), Query Frame = 1
Query: 118 KDYAFHKSVSKNLWKETIFKPAAEELKNHAAYVAKVGT------AHIDELFLSAFGMRKGVGWFRSQRKQASQYVKDHGQTGSSGGKTEKLKVIMRQDLYSKHPAVTKAGMRES 441
K +++ W + + PA L+ + Y+ ++ I E FLS FG +K WF+SQ+KQA Y +D GQTG+SGGKTEK V +RQ LYS + AV K M+ES
Sbjct: 77 KKWSYDNEHGAYTWLQHLATPAVNLLRRNDKYLQELRDRGDDPETFIKEFFLSGFGQKKLKKWFKSQKKQAGDYHRDQGQTGASGGKTEKPCVSLRQQLYSTNAAVVKDHMQES 190
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Length | 879 |
Hectar predicted targeting category | other localisation |
Gene id | Ec-00_004020.1 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Ec-00_004020.1 ID=Ec-00_004020.1|Name=Ec-00_004020.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=293bp MHPRFLDYAAWPLKDSGYQELEKYALFQAEKKVGASFHGKDYAFHKSVSK NLWKETIFKPAAEELKNHAAYVAKVGTAHIDELFLSAFGMRKGVGWFRSQ RKQASQYVKDHGQTGSSGGKTEKLKVIMRQDLYSKHPAVTKAGMRESFGG LETDSDDEDDDDSESEGGEGGEVEDAPLNQELWGDLSRHMEDRGDSAANL TAMEEGDDCSALEDDAGDDPPADFGDAGGDCGQDGDSPPEGDGSNDQGGA AGGVLPPPAARGLSKETQEAIEKAEREDKEKAEREAEELGRI* back to topspliced messenger RNA >Ec-00_004020.1 ID=Ec-00_004020.1|Name=Ec-00_004020.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=879bp|location=Sequence derived from alignment at chr_00:4910845..4915603- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.
ATGCACCCGCGCTTCCTTGACTACGCTGCCTGGCCCCTCAAAGACTCCGG ATACCAGGAATTGGAGAAGTATGCGCTTTTCCAGGCGGAAAAGAAGGTCG GGGCTTCCTTCCATGGCAAGGACTACGCCTTCCACAAGTCCGTGTCGAAG AACTTGTGGAAAGAGACTATCTTCAAGCCCGCCGCAGAGGAGCTGAAGAA TCACGCCGCATATGTCGCAAAGGTTGGAACCGCTCACATCGACGAACTCT TCCTCTCGGCTTTCGGAATGAGGAAGGGGGTAGGGTGGTTCCGAAGCCAG CGGAAGCAGGCCTCTCAGTACGTCAAGGACCACGGACAGACGGGGTCGAG TGGGGGGAAGACCGAGAAGCTGAAGGTCATCATGCGACAAGACTTATACA GCAAGCACCCAGCCGTGACGAAGGCAGGGATGCGAGAGTCCTTCGGAGGA TTAGAGACCGACTCGGACGATGAAGACGACGACGACAGCGAGAGCGAGGG AGGCGAAGGCGGGGAGGTCGAAGACGCACCTTTGAACCAGGAGTTGTGGG GTGACCTCTCGAGGCACATGGAGGACCGGGGAGACAGTGCGGCGAACCTG ACTGCGATGGAAGAGGGAGATGACTGCAGTGCGCTGGAAGATGACGCGGG GGATGACCCACCCGCCGACTTCGGCGACGCCGGTGGAGACTGTGGCCAAG ACGGAGACAGTCCGCCCGAGGGCGACGGCAGCAACGATCAGGGGGGCGCT GCGGGAGGGGTTCTTCCGCCTCCCGCTGCCAGGGGCCTTAGCAAAGAAAC CCAAGAGGCTATCGAGAAAGCGGAGAGGGAAGATAAAGAGAAAGCAGAGA GGGAAGCGGAAGAGCTGGGTAGGATTTGA back to topprotein sequence of Ec-00_004020.1 >Ec-00_004020.1 ID=Ec-00_004020.1|Name=Ec-00_004020.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=293bp
MHPRFLDYAAWPLKDSGYQELEKYALFQAEKKVGASFHGKDYAFHKSVSK NLWKETIFKPAAEELKNHAAYVAKVGTAHIDELFLSAFGMRKGVGWFRSQ RKQASQYVKDHGQTGSSGGKTEKLKVIMRQDLYSKHPAVTKAGMRESFGG LETDSDDEDDDDSESEGGEGGEVEDAPLNQELWGDLSRHMEDRGDSAANL TAMEEGDDCSALEDDAGDDPPADFGDAGGDCGQDGDSPPEGDGSNDQGGA AGGVLPPPAARGLSKETQEAIEKAEREDKEKAEREAEELGRI* back to topmRNA from alignment at chr_00:4910845..4915603- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >Ec-00_004020.1 ID=Ec-00_004020.1|Name=Ec-00_004020.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=4759bp|location=Sequence derived from alignment at chr_00:4910845..4915603- (Ectocarpus species7 Ec32 male_plus_femaleSDR) ATGCACCCGCGCTTCCTTGTTCGTGAAGTCTGTCTACCTACCAGTCTATG
CAGCATCAGTTACTAACTATTTCGAGCTGTACGTACTGACTTGCTTGGTG
TTGATGGTATTGATTATACAACACACAAACGGCAACGAAGGTAACCACAG
CAGTATACCTAGCAGACATCGAAATACTTCTTTCTGCAGGCCACAATATC
TAGACTGATCTGTGTGATCTACTGACAATACATATACAGAGAGAGGCAAA
TGCAGCGGGAGCGGGCGTGTTGCTTTCCATGTCCCGCACAACACACGTAA
GTAGGTGCTCCCTCAAAAATATAGCTATGTAACGAACGTCGTTCCGTTGC
GGGATGTTTCTTTGTGCGTGAGACTGCGGTGCCCCCAATTTCAAAAAATG
ATGTGGATGTTCGATGGGTGTATTTGTCGCGGGTGTCTGCCGTTGGATCC
GCCGGGAAATTATAGCACCATCACCTCTCCCGCACGGAGTACAAGAAGCA
AAAGGAAGGAAAGGCCAGACCATCACCAATAACTACTGCTGTTGTGTGCG
ATACGTGGTGTCAGTTGTAGTATGTATGTATGTCTGCGGAGCCCCCTGCT
GCGCGGAGGGCGCAGCAAAGTAGGATACAAGTGAGAGTATACTGGGAAGC
TGATGTACAGAGAGAGCAAGAACGAGAGAGAGACAGACAGACAGACAGAG
ACAGAGAGGGATCCTACGTACGTGTTGTTGTCGGGTTGTGTAGTGATACG
GGTGATGGTGTCTGCTACTTGTATCTGTGTCTCACGTACAGCAGTAAGTA
AGTGTGGTGCGCGGTGCGCGCGGGAAAACATCCATCAATTTTTGTATAGC
ACACGACACACAACACGACTCGTACCTGATGTGCACACACACGCAAAGCT
AATGAATGTGTGCTCTGCTTCTTCTTGATGTCGAACAGGTCAGTCAGGTC
AGCTCTGTAGGGTGTGGATGGAAGTTGTGCAAACGACTCAGGGTGAGGCG
CGCAGCAGAGAGAGCGGCCTAACAACAAAAAACCCGTTAACGGTATACAA
ATAATCTACACCACCAATCAATGATCTCCTCTTTCCCGTACACACAAGGA
GATTGTCAAGGTCGCGTGTTATATCCGGCATATGACCTTTGGATTTTTTT
CCCCTTGGCGAGATGACTCCCAAGGTTGCCGCACCGCCGAGATTGCCAAG
GTTGCGTGTTGCCGGTATTGCGATGACCTTTGGATTTTTTCGGATTTTTT
TCCCCTTGGCGAGATGACTCCCAAGGTTGCCGCACCGCCGAGATTGCCAA
GGTATCGTGCTGCCGGCATTGCAATGACCTTCGTATTTTTTACCCCTTGG
CGATGTTACTCCCAAGGATGCCGCACCGCCGAGATTGCCAAGGTTGCGTG
TTGCCGGCATTGTGATGACCTTTGGATGTTTTACCCCTTGGCGTGGTGAC
TCCCAAGGTTGCCGCACGGCCGAGATTGCCAAGGTAGCGTGTTGCCGGCA
TTGTGATAACCTTTGGATGTTTGACCCCTTGGCGTGGTGACTCCCAAGGT
TGCCGCACGGCCGAGATTGTCAAGGTACAAAATTCAGGAAAATGAGGCAC
ATCCACCTTGGCAAGGTGGGGGGGGGGAGGGGTATTTTCTCCACAAGGGG
GTTCGACCTCCACCTGTGTAGCATTTTGTGTTTTTCAACACATATATGCT
GGGGGGGTGTCACGGTAGCATGAACGGGCGCTAAATACTGAGAACCATTC
CATTTCACGATGGTTTGAGGAGGGCTAGGGTACACCCCAGGGTATACCTG
AATCATTGGCGGAGCCCCTCCAGAGCTCCGCCTCAACACGTGTTTTGGGG
TGATCGCTCACTGTTAACACGGCCAATCTCGGAAGAGGAACTTTGACCCA
CCCGCCGAGAAGCAACCAGTCTGTGAGTCAAAGGATGAGAGGTAGATCTG
GATAGATCTTGCCTAGACCCCCCTTGCTAATCCCACTTGATTAGACCCAC
AGGGCTAGACCCACCGGGATTGTATCCCTTTTGCTAGCCCCCAACTTGAA
TCCAACGGTAAGATACCATGAAACTGACCATGAAATGGATGAAACTAATT
GAACCCTAGCCAGTGCTTGTGACGCTAACACATGAGGGAGCTACCCTAAG
CGATAGCGTTATAACCTCTTTGACACGATTGCTTGGGTTGGTATTCCGTT
GTCTGGCCCGGGAGGCTTAAAGGCTTACTCAGTAATCTTATTTCCTACGT
GCTTACGGATACGGCACGTCTGCCTCGAATCGTCGTTTACAGGACTACGC
TGCCTGGCCCCTCAAAGACTCCGGATACCAGGAATTGGAGAAGTATGCGC
TTTTCCAGGCGGAAAAGAAGGTCGGGGCTTCCTTCCATGTGAGACGGTTT
GGGGGTTAGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGGGGGG
GGAGGGGGGGGGTCTCTGCATACGGCTGTATGGTTCGTCGTGTTTGTACT
AGTGAAAAAAACCTGGCTGGAAGTGCATATGGACAGATGGAACAGCGAAC
GTTGCACCCCCTTCGAGTGAGACGTGTGTTGCTCATTGTCCGGAAGTTTA
GCGTCAATGGGTAGGTCAAATTAATCCCTTTATTAAATACTCGCGTGGTG
GAGTACCCTCCCTAAGGAGTTGAAGCGAGCGGAGCGCGCCCGTTCTCGCG
GTGGGGTCTAGGGATGTGGAAACACGTCGTATGCCTGACTGGAAGGTGTT
AGCTGTTACATGGCATACAATGCACATGGATGATGACGTTTCCTTAACTG
ACGATAAGAAGACAATACGGCGGGAGACTTCCCTAACGCACGAAGCACTG
CCAGATGGCCGAGCCCCGAGTATCAAGGGTTAAACCCAACCCATCGTACT
CTCAACTCCTATCTGCGTAAGCACTCCCTGCAGGCCTGATGGAAAATATT
ATTCCGCTGATGCACACACGAACAATTGTATCGCTTCTACGTTGGACATG
GTGTAGCGTAGCACGGTCACCCTGGATATGCTCGGTTTTGGAATCTGAAG
TTTTGCCTTTGCGTCACCCCCGATCATGCCGCAATGCAGGGCAAGGACTA
CGCCTTCCACAAGTCCGTGTCGAAGAACTTGTGGAAAGAGACTATCTTCA
AGCCCGCCGCAGAGGAGCTGAAGAATCACGCCGCATATGTCGCAAAGGTT
GGAACCGCTCACATCGACGAACTCTTCCTCTCGGCTTTCGGAATGAGGAA
GGGGGTAGGGTGGTTCCGAAGCCAGCGGAAGCAGGCCTCTCAGTACGTCA
AGGACCACGGACAGACGGGGTCGAGTGGGGGGAAGACCGAGAAGCTGAAG
GTCATCATGCGACAAGACTTATACAGCAAGCACCCAGCCGTGACGAAGGC
AGGGATGCGAGAGTCCTTCGGAGGATTAGAGACCGACTCGGACGATGAAG
ACGACGACGACAGCGAGAGCGAGGGAGGCGAAGGCGGGGAGGTCGAAGAC
GCACCTTTGAACCAGGAGTTGTGGGGTGACCTCTCGAGGCACATGGAGGA
CCGGGGAGACAGTGCGGCGAACCTGACTGCGATGGAAGAGGGAGATGACT
GCAGTGCGCTGGAAGATGACGCGGGGGATGACCCACCCGCCGACTTCGGC
GACGCCGGTGGAGACTGTGGCCAAGACGGAGACAGTCCGCCCGAGGGCGA
CGGCAGCAACGATCAGGGGGGCGCTGCGGGAGGGGTTCTTCCGCCTCCCG
CTGCCAGGGTGAGAACCGACCAACCCATCCGTAGGCGCCCGGTGGGGTCG
GGGGGTGGTAGCTCCACGGACGGAACCCCCTGCCTCGTGGTTCGGGCGGG
GGGGGGTCCTCGCGCGGTGCTCCATCACGGTCGACCGCCCGCCCTCGTCA
CGTGCCCAGAGGAACTCACGGCGCCCTTGATGAGGAAATGGAGATGGGGA
CGAGCGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNGCCCGGGGGGAAACCGGCCAACCCCTTCGTTGGGCCCCGGGG
GGGTTGGGGGGGGGTTATTTCCAGGGAGGAACCCCCTTCCTTGGGGTTTG
GGGGGGGGGGGGTTCCTGGGGGGGTGTTCCAGCAGGTTGGCCCCCCCCCC
TTGTTCAGGTCCCCAGGGAAACCCAGGGCCCCTTTGAGGGGAAAAGGGAG
AGGGGGAGGGGGGGATTCCCCCTGGGCCCCGGGCAAAGGGAAGGGGGAAA
ACCCGGCGGAACCCTTCGGGGGGTTTGGGAAGGGGGCCACAGGGTTAACC
GGGCAATTTTGGCCCACCAAAAGTGGGTGTTGAGGGACCATTGGGGGCCC
CCCGGGGGGGGGGGGGGGCGATAAAGACCTCGAAGAGAGGAAGCTTGCGC
ACAGGCAGGCCGAACACAAAGAGGCCTTGCGGACTAGGGATCTCGAACAA
CTCAGGCATCTCCAGCAGTCTGGGGCAGTATCTGCCAATGCGTACAGATC
GGCAGTTTTCCAGGGCCTTAGCAAAGAAACCCAAGAGGCTATCGAGAAAG
CGGAGAGGGAAGATAAAGAGAAAGCAGAGAGGGAAGCGGAAGAGCTGGGT
AGGATTTGA back to topCoding sequence (CDS) from alignment at chr_00:4910845..4915603- >Ec-00_004020.1 ID=Ec-00_004020.1|Name=Ec-00_004020.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=879bp|location=Sequence derived from alignment at chr_00:4910845..4915603- (Ectocarpus species7 Ec32 male_plus_femaleSDR) ATGCACCCGCGCTTCCTTGACTACGCTGCCTGGCCCCTCAAAGACTCCGG ATACCAGGAATTGGAGAAGTATGCGCTTTTCCAGGCGGAAAAGAAGGTCG GGGCTTCCTTCCATGGCAAGGACTACGCCTTCCACAAGTCCGTGTCGAAG AACTTGTGGAAAGAGACTATCTTCAAGCCCGCCGCAGAGGAGCTGAAGAA TCACGCCGCATATGTCGCAAAGGTTGGAACCGCTCACATCGACGAACTCT TCCTCTCGGCTTTCGGAATGAGGAAGGGGGTAGGGTGGTTCCGAAGCCAG CGGAAGCAGGCCTCTCAGTACGTCAAGGACCACGGACAGACGGGGTCGAG TGGGGGGAAGACCGAGAAGCTGAAGGTCATCATGCGACAAGACTTATACA GCAAGCACCCAGCCGTGACGAAGGCAGGGATGCGAGAGTCCTTCGGAGGA TTAGAGACCGACTCGGACGATGAAGACGACGACGACAGCGAGAGCGAGGG AGGCGAAGGCGGGGAGGTCGAAGACGCACCTTTGAACCAGGAGTTGTGGG GTGACCTCTCGAGGCACATGGAGGACCGGGGAGACAGTGCGGCGAACCTG ACTGCGATGGAAGAGGGAGATGACTGCAGTGCGCTGGAAGATGACGCGGG GGATGACCCACCCGCCGACTTCGGCGACGCCGGTGGAGACTGTGGCCAAG ACGGAGACAGTCCGCCCGAGGGCGACGGCAGCAACGATCAGGGGGGCGCT GCGGGAGGGGTTCTTCCGCCTCCCGCTGCCAGGGGCCTTAGCAAAGAAAC CCAAGAGGCTATCGAGAAAGCGGAGAGGGAAGATAAAGAGAAAGCAGAGA GGGAAGCGGAAGAGCTGGGTAGGATTTGA back to top
Synonyms
The feature 'Ec-00_004020.1' has the following synonyms
Synonym |
Esi0316_0004 |
Esi_0316_0004 |
|