Ec-00_003990.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_003990.1
Unique NameEc-00_003990.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length137
Homology
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BLAST of Ec-00_003990.1 vs. uniprot
Match: D7FWQ2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWQ2_ECTSI)

HSP 1 Score: 221 bits (562), Expect = 4.030e-72
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1 
Query:    1 MALLPSTPSTPPLSSQITTHTARAASNTVHPCLAKAAKRYQHIVLHRRILSAGCFSAASTXXXXXXXXXXXXXXXXXXXXXXGSAEQVPADRESQYLCPGTGCNTNLFLKENIHKGRADYPACRTLAPAPARAPAI 408
            MALLPSTPSTPPLSSQITTHTARAASNTVHPCLAKAAKRYQHIVLHRRILSAGCFSAASTXXXXXXXXXXXXXXXXXXXXXXGSAEQVPADRESQYLCPGTGCNTNLFLKENIHKGRADYPACRTLAPAPARAPAI
Sbjct:    1 MALLPSTPSTPPLSSQITTHTARAASNTVHPCLAKAAKRYQHIVLHRRILSAGCFSAASTXXXXXXXXXXXXXXXXXXXXXXGSAEQVPADRESQYLCPGTGCNTNLFLKENIHKGRADYPACRTLAPAPARAPAI 136
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BLAST of Ec-00_003990.1 vs. uniprot
Match: D8LKW7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKW7_ECTSI)

HSP 1 Score: 113 bits (283), Expect = 9.890e-29
Identity = 71/139 (51.08%), Postives = 75/139 (53.96%), Query Frame = 1 
Query:    1 MALLPSTPSTPPLSSQITTHTARAASNT----------VH--PCLAKAAKRYQHIVLHRRILSAGCFSAASTXXXXXXXXXXXXXXXXXXXXXXGSAEQVPADRESQYLCPGTGCNTNLFLKENIHKGRADYPACRTLA 381
            MALLPSTPSTPPLSSQ T HTARAAS            +H  P      +RYQ IVLHRRILSAGCFS                              +  ADRE QYLCPGTGCNTNL      HK RADYPACRT +
Sbjct:    1 MALLPSTPSTPPLSSQSTAHTARAASTLFLSLGQKTPYIHASPKPPSLQRRYQRIVLHRRILSAGCFSGCFYPAARERSRLICECWLICCCHRRRRLARAKADREPQYLCPGTGCNTNL------HKDRADYPACRTFS 133
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BLAST of Ec-00_003990.1 vs. uniprot
Match: D8LET1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LET1_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 1.820e-17
Identity = 43/53 (81.13%), Postives = 44/53 (83.02%), Query Frame = 1 
Query:  247 GSAEQVPADRESQYLCPGTGCNTNLFLKENIHKGRADY---PACRTLAPAPAR 396
            GS EQVPADRE Q+LCPGTGCNTNLFLKENIHK RADY   PA  TLAP PAR
Sbjct:   53 GSPEQVPADRELQHLCPGTGCNTNLFLKENIHKDRADYCTTPA-GTLAPVPAR 104
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BLAST of Ec-00_003990.1 vs. uniprot
Match: A0A6H5KCU2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCU2_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 5.500e-16
Identity = 36/41 (87.80%), Postives = 36/41 (87.80%), Query Frame = 1 
Query:  250 SAEQVPADRESQYLCPGTGCNTNLFLKENIHKGRADYPACR 372
            S EQVPADRE QYLCP TGCNTNLFLKENI K RADYPACR
Sbjct:   52 SPEQVPADRELQYLCPRTGCNTNLFLKENIRKDRADYPACR 92
The following BLAST results are available for this feature:
BLAST of Ec-00_003990.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FWQ2_ECTSI4.030e-72100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LKW7_ECTSI9.890e-2951.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LET1_ECTSI1.820e-1781.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KCU2_9PHAE5.500e-1687.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:4776295..4776705 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length411
Hectar predicted targeting categoryother localisation
Gene idEc-00_003990.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_003990Ec-00_003990Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 4776295..4776705 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003990.1.1Ec-00_003990.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 4776295..4776705 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003990.1CDS:Ec-00_003990.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 4776295..4776705 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003990.1Ec-00_003990.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 4776295..4776705 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_003990.1 ID=Ec-00_003990.1|Name=Ec-00_003990.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=137bp
MALLPSTPSTPPLSSQITTHTARAASNTVHPCLAKAAKRYQHIVLHRRIL
SAGCFSAASTPPPASGVGSSASAGSSAAAAAAGSAEQVPADRESQYLCPG
TGCNTNLFLKENIHKGRADYPACRTLAPAPARAPAI*
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spliced messenger RNA

>Ec-00_003990.1 ID=Ec-00_003990.1|Name=Ec-00_003990.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=411bp|location=Sequence derived from alignment at chr_00:4776295..4776705- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCCTCCTCCCATCTACTCCTTCTACACCCCCCCTCTCATCACAAAT
CACAACTCACACCGCCAGAGCAGCTTCCAACACCGTACATCCATGCCTTG
CCAAAGCCGCCAAGCGCTACCAACACATCGTCCTCCACCGCCGGATCCTC
TCCGCCGGCTGCTTCTCCGCTGCTTCTACCCCGCCGCCCGCGAGCGGAGT
CGGCTCATCTGCGAGTGCTGGCTCATCTGCTGCTGCCGCCGCCGCCGGCT
CGGCCGAGCAAGTCCCGGCCGACCGCGAGTCGCAATACCTCTGCCCAGGC
ACCGGTTGCAACACCAACCTCTTCTTGAAGGAAAATATCCACAAAGGCAG
GGCCGACTACCCCGCCTGCAGAACTTTAGCGCCGGCACCTGCGCGTGCAC
CGGCTATTTGA
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protein sequence of Ec-00_003990.1

>Ec-00_003990.1 ID=Ec-00_003990.1|Name=Ec-00_003990.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=137bp
MALLPSTPSTPPLSSQITTHTARAASNTVHPCLAKAAKRYQHIVLHRRIL
SAGCFSAASTPPPASGVGSSASAGSSAAAAAAGSAEQVPADRESQYLCPG
TGCNTNLFLKENIHKGRADYPACRTLAPAPARAPAI*
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mRNA from alignment at chr_00:4776295..4776705-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_003990.1 ID=Ec-00_003990.1|Name=Ec-00_003990.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=411bp|location=Sequence derived from alignment at chr_00:4776295..4776705- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGCCCTCCTCCCATCTACTCCTTCTACACCCCCCCTCTCATCACAAAT
CACAACTCACACCGCCAGAGCAGCTTCCAACACCGTACATCCATGCCTTG
CCAAAGCCGCCAAGCGCTACCAACACATCGTCCTCCACCGCCGGATCCTC
TCCGCCGGCTGCTTCTCCGCTGCTTCTACCCCGCCGCCCGCGAGCGGAGT
CGGCTCATCTGCGAGTGCTGGCTCATCTGCTGCTGCCGCCGCCGCCGGCT
CGGCCGAGCAAGTCCCGGCCGACCGCGAGTCGCAATACCTCTGCCCAGGC
ACCGGTTGCAACACCAACCTCTTCTTGAAGGAAAATATCCACAAAGGCAG
GGCCGACTACCCCGCCTGCAGAACTTTAGCGCCGGCACCTGCGCGTGCAC
CGGCTATTTGA
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Coding sequence (CDS) from alignment at chr_00:4776295..4776705-

>Ec-00_003990.1 ID=Ec-00_003990.1|Name=Ec-00_003990.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=411bp|location=Sequence derived from alignment at chr_00:4776295..4776705- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGCCCTCCTCCCATCTACTCCTTCTACACCCCCCCTCTCATCACAAAT
CACAACTCACACCGCCAGAGCAGCTTCCAACACCGTACATCCATGCCTTG
CCAAAGCCGCCAAGCGCTACCAACACATCGTCCTCCACCGCCGGATCCTC
TCCGCCGGCTGCTTCTCCGCTGCTTCTACCCCGCCGCCCGCGAGCGGAGT
CGGCTCATCTGCGAGTGCTGGCTCATCTGCTGCTGCCGCCGCCGCCGGCT
CGGCCGAGCAAGTCCCGGCCGACCGCGAGTCGCAATACCTCTGCCCAGGC
ACCGGTTGCAACACCAACCTCTTCTTGAAGGAAAATATCCACAAAGGCAG
GGCCGACTACCCCGCCTGCAGAACTTTAGCGCCGGCACCTGCGCGTGCAC
CGGCTATTTGA
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Synonyms
The feature 'Ec-00_003990.1' has the following synonyms
Synonym
Esi0310_0014
Esi_0310_0014