Ec-00_003950.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_003950.1
Unique NameEc-00_003950.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length393
Homology
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BLAST of Ec-00_003950.1 vs. uniprot
Match: D7FWW8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWW8_ECTSI)

HSP 1 Score: 604 bits (1558), Expect = 7.390e-215
Identity = 352/390 (90.26%), Postives = 354/390 (90.77%), Query Frame = 1 
Query:    1 MEDNNDQAGSSSNGVNESFDSSTTVVDEGDIYTGDGHLRGLFDGSSDGMVEDLTGSSEAPEATPRTVPTGVCDLATESGQGDFLTGPWRSTASXXXXXXXXXXXDDRGGHGHNPMYSAARRTGNNHELHGHYRGTGAPFTPQPMGSMGHMAVGYNGKAGIINQPPTEFDPGACSQPWVSLADYHAICSAQWPHHQPGGVHGQHRGQLGANTPYGPGVSAFLPSVGGSSLDTLPSALAPYGTVQGAPGGAPATAHGSSSYLGVGPAIPLSAGANAVAASAGXXXXXXXXXPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQGVPDLELDAFREQLELMQSPSATVGTLRATIASFEAMKSCRRMNGKTNLTNSVATLPLYKAPNI 1170
            MEDNNDQAGSSSNGVN+SFDSSTTVVDEGDIYTGDGHLRGLFDGSSDGMVEDLTGSSEAPEATP TVPTGVCDLATESGQGDFLTGPWRS AS  XXXXXXXXX     +GHNP YSAARRTGNNHELHGHYRGTGAPFTPQPMGSMGHMAVGYNG AGIINQPPTEF PGACSQPWVSLADYHAICSAQWPHHQ GG HGQHRGQLGANTPYGPGVS FLPSVGGSSLDTLPSALAPYG VQGAPGGAPATAHGSSSYLGVGPAIPLSAGAN VAASAG         P       XXXXXXXXXXXXXXXXXXXXXXXXXXXAQGVPD ELD FREQLELMQSPSATVGTLRATIASFEAMKSCRRMNGK NLTNSVATLPLYKAPNI
Sbjct:   13 MEDNNDQAGSSSNGVNDSFDSSTTVVDEGDIYTGDGHLRGLFDGSSDGMVEDLTGSSEAPEATPWTVPTGVCDLATESGQGDFLTGPWRSNASSTXXXXXXXXXXXXXXNGHNPTYSAARRTGNNHELHGHYRGTGAPFTPQPMGSMGHMAVGYNGAAGIINQPPTEFGPGACSQPWVSLADYHAICSAQWPHHQLGGAHGQHRGQLGANTPYGPGVSTFLPSVGGSSLDTLPSALAPYGMVQGAPGGAPATAHGSSSYLGVGPAIPLSAGANKVAASAGVAAVAPLAGPAIAVPPAXXXXXXXXXXXXXXXXXXXXXXXXXXXAQGVPDPELDGFREQLELMQSPSATVGTLRATIASFEAMKSCRRMNGKPNLTNSVATLPLYKAPNI 402
The following BLAST results are available for this feature:
BLAST of Ec-00_003950.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FWW8_ECTSI7.390e-21590.26Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:4607558..4609077 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length1179
Hectar predicted targeting categoryother localisation
Gene idEc-00_003950.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_003950Ec-00_003950Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 4607558..4609077 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003950.1.1Ec-00_003950.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 4607558..4608545 +
Ec-00_003950.1.2Ec-00_003950.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 4608887..4609077 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003950.1CDS:Ec-00_003950.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 4607558..4608545 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003950.1Ec-00_003950.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 4607558..4609077 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_003950.1 ID=Ec-00_003950.1|Name=Ec-00_003950.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=393bp
MEDNNDQAGSSSNGVNESFDSSTTVVDEGDIYTGDGHLRGLFDGSSDGMV
EDLTGSSEAPEATPRTVPTGVCDLATESGQGDFLTGPWRSTASSSTTTTT
GGDGDDRGGHGHNPMYSAARRTGNNHELHGHYRGTGAPFTPQPMGSMGHM
AVGYNGKAGIINQPPTEFDPGACSQPWVSLADYHAICSAQWPHHQPGGVH
GQHRGQLGANTPYGPGVSAFLPSVGGSSLDTLPSALAPYGTVQGAPGGAP
ATAHGSSSYLGVGPAIPLSAGANAVAASAGVAAVAPPAGPAIAVPAAPAV
APPAAPAVAPPAAAAVAPPGNAAVAQGVPDLELDAFREQLELMQSPSATV
GTLRATIASFEAMKSCRRMNGKTNLTNSVATLPLYKAPNIPM*
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spliced messenger RNA

>Ec-00_003950.1 ID=Ec-00_003950.1|Name=Ec-00_003950.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1179bp|location=Sequence derived from alignment at chr_00:4607558..4609077+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGGACAACAACGACCAGGCTGGCAGCTCGTCCAACGGCGTCAACGA
GTCATTCGATTCATCGACGACTGTCGTCGACGAGGGCGACATCTACACGG
GCGACGGCCACCTCCGAGGTCTGTTCGACGGTAGCTCAGACGGCATGGTG
GAAGATTTAACGGGCTCGTCTGAGGCTCCTGAGGCTACACCCCGGACCGT
GCCGACCGGTGTTTGCGACCTTGCAACTGAGAGCGGACAAGGCGACTTCC
TAACGGGCCCGTGGCGCTCAACTGCCAGCAGCAGCACCACCACCACCACC
GGAGGCGATGGAGACGACCGGGGCGGCCACGGCCACAATCCCATGTATTC
CGCAGCGAGGCGCACCGGCAACAACCACGAGCTTCATGGCCACTACCGGG
GCACAGGAGCTCCCTTTACGCCACAGCCGATGGGATCCATGGGGCACATG
GCCGTTGGATACAACGGCAAGGCCGGGATCATCAACCAGCCACCAACGGA
ATTCGACCCGGGTGCCTGCAGCCAACCTTGGGTTTCCCTTGCCGACTACC
ACGCCATCTGTTCTGCCCAGTGGCCTCATCATCAGCCCGGCGGGGTACAC
GGACAGCACAGGGGGCAGCTAGGAGCCAACACACCTTACGGGCCCGGTGT
ATCAGCCTTCCTTCCTTCTGTTGGGGGGTCTTCATTGGACACCCTCCCAT
CCGCTTTGGCACCGTACGGAACGGTTCAGGGCGCGCCTGGCGGAGCTCCC
GCGACTGCGCATGGGTCATCGTCCTATTTGGGGGTTGGCCCAGCGATTCC
ACTATCTGCTGGTGCAAACGCGGTTGCTGCGTCTGCTGGGGTGGCGGCGG
TGGCGCCTCCTGCTGGTCCAGCGATTGCTGTCCCTGCTGCTCCAGCGGTT
GCGCCCCCTGCTGCCCCTGCGGTGGCGCCCCCTGCTGCAGCGGCGGTTGC
GCCCCCTGGAAACGCCGCAGTCGCCCAGGGAGTACCAGACCTAGAACTAG
ATGCGTTTCGGGAGCAACTGGAGTTGATGCAGTCCCCGTCGGCGACCGTG
GGAACCCTACGCGCGACCATCGCGTCCTTCGAGGCCATGAAGAGCTGCCG
CAGGATGAACGGCAAAACCAACCTGACCAACTCCGTCGCCACTCTACCCC
TTTACAAGGCTCCCAATATTCCGATGTAA
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protein sequence of Ec-00_003950.1

>Ec-00_003950.1 ID=Ec-00_003950.1|Name=Ec-00_003950.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=393bp
MEDNNDQAGSSSNGVNESFDSSTTVVDEGDIYTGDGHLRGLFDGSSDGMV
EDLTGSSEAPEATPRTVPTGVCDLATESGQGDFLTGPWRSTASSSTTTTT
GGDGDDRGGHGHNPMYSAARRTGNNHELHGHYRGTGAPFTPQPMGSMGHM
AVGYNGKAGIINQPPTEFDPGACSQPWVSLADYHAICSAQWPHHQPGGVH
GQHRGQLGANTPYGPGVSAFLPSVGGSSLDTLPSALAPYGTVQGAPGGAP
ATAHGSSSYLGVGPAIPLSAGANAVAASAGVAAVAPPAGPAIAVPAAPAV
APPAAPAVAPPAAAAVAPPGNAAVAQGVPDLELDAFREQLELMQSPSATV
GTLRATIASFEAMKSCRRMNGKTNLTNSVATLPLYKAPNIPM*
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mRNA from alignment at chr_00:4607558..4609077+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_003950.1 ID=Ec-00_003950.1|Name=Ec-00_003950.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1520bp|location=Sequence derived from alignment at chr_00:4607558..4609077+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGAGGACAACAACGACCAGGCTGGCAGCTCGTCCAACGGCGTCAACGA
GTCATTCGATTCATCGACGACTGTCGTCGACGAGGGCGACATCTACACGG
GCGACGGCCACCTCCGAGGTCTGTTCGACGGTAGCTCAGACGGCATGGTG
GAAGATTTAACGGGCTCGTCTGAGGCTCCTGAGGCTACACCCCGGACCGT
GCCGACCGGTGTTTGCGACCTTGCAACTGAGAGCGGACAAGGCGACTTCC
TAACGGGCCCGTGGCGCTCAACTGCCAGCAGCAGCACCACCACCACCACC
GGAGGCGATGGAGACGACCGGGGCGGCCACGGCCACAATCCCATGTATTC
CGCAGCGAGGCGCACCGGCAACAACCACGAGCTTCATGGCCACTACCGGG
GCACAGGAGCTCCCTTTACGCCACAGCCGATGGGATCCATGGGGCACATG
GCCGTTGGATACAACGGCAAGGCCGGGATCATCAACCAGCCACCAACGGA
ATTCGACCCGGGTGCCTGCAGCCAACCTTGGGTTTCCCTTGCCGACTACC
ACGCCATCTGTTCTGCCCAGTGGCCTCATCATCAGCCCGGCGGGGTACAC
GGACAGCACAGGGGGCAGCTAGGAGCCAACACACCTTACGGGCCCGGTGT
ATCAGCCTTCCTTCCTTCTGTTGGGGGGTCTTCATTGGACACCCTCCCAT
CCGCTTTGGCACCGTACGGAACGGTTCAGGGCGCGCCTGGCGGAGCTCCC
GCGACTGCGCATGGGTCATCGTCCTATTTGGGGGTTGGCCCAGCGATTCC
ACTATCTGCTGGTGCAAACGCGGTTGCTGCGTCTGCTGGGGTGGCGGCGG
TGGCGCCTCCTGCTGGTCCAGCGATTGCTGTCCCTGCTGCTCCAGCGGTT
GCGCCCCCTGCTGCCCCTGCGGTGGCGCCCCCTGCTGCAGCGGCGGTTGC
GCCCCCTGGAAACGCCGCAGTCGCCCAGGGAGTACCAGGTGAGGGTAACA
TGGTCAGGTGCAATACACCCCAGTGCGCGTTCGACTACCCCGTTAACGAT
CGCGCCGTGTATGTTAGAATTGTTATCCGTTCGGGTTCGAAAGCGTGTAG
ACTTTGTGTTTATAAATTGTGTTTTGTCGCCTCCCTCCCCCCGTGCTTCG
TTGGGTTGAGGGAAATACACGATTCAGCACCGGTGTGAATAGGAAAGGCT
ATCGACACGTGCGCAACTATAATTTCAACCTGCAAACCACAGTGCACCCA
GAATACTACCCGATATTCGAAATCCTTCGTCCACCGTGTACTTACGCCCT
CCGAATGGAACCATAATGTTTGCGACCAGACCTAGAACTAGATGCGTTTC
GGGAGCAACTGGAGTTGATGCAGTCCCCGTCGGCGACCGTGGGAACCCTA
CGCGCGACCATCGCGTCCTTCGAGGCCATGAAGAGCTGCCGCAGGATGAA
CGGCAAAACCAACCTGACCAACTCCGTCGCCACTCTACCCCTTTACAAGG
CTCCCAATATTCCGATGTAA
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Coding sequence (CDS) from alignment at chr_00:4607558..4609077+

>Ec-00_003950.1 ID=Ec-00_003950.1|Name=Ec-00_003950.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=1179bp|location=Sequence derived from alignment at chr_00:4607558..4609077+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGAGGACAACAACGACCAGGCTGGCAGCTCGTCCAACGGCGTCAACGA
GTCATTCGATTCATCGACGACTGTCGTCGACGAGGGCGACATCTACACGG
GCGACGGCCACCTCCGAGGTCTGTTCGACGGTAGCTCAGACGGCATGGTG
GAAGATTTAACGGGCTCGTCTGAGGCTCCTGAGGCTACACCCCGGACCGT
GCCGACCGGTGTTTGCGACCTTGCAACTGAGAGCGGACAAGGCGACTTCC
TAACGGGCCCGTGGCGCTCAACTGCCAGCAGCAGCACCACCACCACCACC
GGAGGCGATGGAGACGACCGGGGCGGCCACGGCCACAATCCCATGTATTC
CGCAGCGAGGCGCACCGGCAACAACCACGAGCTTCATGGCCACTACCGGG
GCACAGGAGCTCCCTTTACGCCACAGCCGATGGGATCCATGGGGCACATG
GCCGTTGGATACAACGGCAAGGCCGGGATCATCAACCAGCCACCAACGGA
ATTCGACCCGGGTGCCTGCAGCCAACCTTGGGTTTCCCTTGCCGACTACC
ACGCCATCTGTTCTGCCCAGTGGCCTCATCATCAGCCCGGCGGGGTACAC
GGACAGCACAGGGGGCAGCTAGGAGCCAACACACCTTACGGGCCCGGTGT
ATCAGCCTTCCTTCCTTCTGTTGGGGGGTCTTCATTGGACACCCTCCCAT
CCGCTTTGGCACCGTACGGAACGGTTCAGGGCGCGCCTGGCGGAGCTCCC
GCGACTGCGCATGGGTCATCGTCCTATTTGGGGGTTGGCCCAGCGATTCC
ACTATCTGCTGGTGCAAACGCGGTTGCTGCGTCTGCTGGGGTGGCGGCGG
TGGCGCCTCCTGCTGGTCCAGCGATTGCTGTCCCTGCTGCTCCAGCGGTT
GCGCCCCCTGCTGCCCCTGCGGTGGCGCCCCCTGCTGCAGCGGCGGTTGC
GCCCCCTGGAAACGCCGCAGTCGCCCAGGGAGTACCAGACCTAGAACTAG
ATGCGTTTCGGGAGCAACTGGAGTTGATGCAGTCCCCGTCGGCGACCGTG
GGAACCCTACGCGCGACCATCGCGTCCTTCGAGGCCATGAAGAGCTGCCG
CAGGATGAACGGCAAAACCAACCTGACCAACTCCGTCGCCACTCTACCCC
TTTACAAGGCTCCCAATATTCCGATGTAA
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Synonyms
The feature 'Ec-00_003950.1' has the following synonyms
Synonym
Esi0299_0024
Esi_0299_0024