Ec-00_003930.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_003930.1
Unique NameEc-00_003930.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length149
Homology
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BLAST of Ec-00_003930.1 vs. uniprot
Match: D7FVS2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVS2_ECTSI)

HSP 1 Score: 152 bits (383), Expect = 1.660e-44
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 1 
Query:    1 MAVEDEACNAEEPDVDDDVETDLSSVRNVSGGSDPPARASESVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTSRKTSDHDNVRHDPGTLWWFSAELRQAQSSSTCFRSIWRNT 444
            MAVEDEACNAEEPDVDDDVETDLSSVRNVSGGSDPPARASESVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTSRKTSDHDNVRHDPGTLWWFSAELRQAQSSSTCFRSIWRNT
Sbjct:    1 MAVEDEACNAEEPDVDDDVETDLSSVRNVSGGSDPPARASESVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTSRKTSDHDNVRHDPGTLWWFSAELRQAQSSSTCFRSIWRNT 148
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BLAST of Ec-00_003930.1 vs. uniprot
Match: D7G0S0_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0S0_ECTSI)

HSP 1 Score: 56.2 bits (134), Expect = 1.340e-6
Identity = 26/26 (100.00%), Postives = 26/26 (100.00%), Query Frame = 3 
Query:  369 VMVVLGGAAAGPIFIYMLQKHMEEHV 446
            VMVVLGGAAAGPIFIYMLQKHMEEHV
Sbjct:  195 VMVVLGGAAAGPIFIYMLQKHMEEHV 220
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BLAST of Ec-00_003930.1 vs. uniprot
Match: D7FJ81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ81_ECTSI)

HSP 1 Score: 53.1 bits (126), Expect = 7.970e-6
Identity = 29/34 (85.29%), Postives = 30/34 (88.24%), Query Frame = 1 
Query:   28 AEEPDVDDDVETDLSSVRNVSGGSDPPARASESV 129
            AEEP VDDDVE DLSSVRNVS GSDP ARAS+SV
Sbjct:   54 AEEPFVDDDVEADLSSVRNVSAGSDPSARASKSV 87
The following BLAST results are available for this feature:
BLAST of Ec-00_003930.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FVS2_ECTSI1.660e-44100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G0S0_ECTSI1.340e-6100.00Uncharacterized protein n=3 Tax=Ectocarpus silicul... [more]
D7FJ81_ECTSI7.970e-685.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:4509576..4511439 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length447
Hectar predicted targeting categoryother localisation
Gene idEc-00_003930.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_003930Ec-00_003930Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 4508854..4511439 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003930.1.1Ec-00_003930.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 4509576..4509602 +
Ec-00_003930.1.2Ec-00_003930.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 4510361..4510670 +
Ec-00_003930.1.3Ec-00_003930.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 4510784..4510889 +
Ec-00_003930.1.4Ec-00_003930.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 4511436..4511439 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003930.1CDS:Ec-00_003930.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 4509576..4509602 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003930.1Ec-00_003930.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 4509576..4511439 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_003930.1 ID=Ec-00_003930.1|Name=Ec-00_003930.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=149bp
MAVEDEACNAEEPDVDDDVETDLSSVRNVSGGSDPPARASESVVSGGGAR
RQSTGTAPQGSSSQTVPAPSTRRQSAPPVAGAGSGSGGGSSSAAPAASSA
ATSSQSTSRKTSDHDNVRHDPGTLWWFSAELRQAQSSSTCFRSIWRNT*
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spliced messenger RNA

>Ec-00_003930.1 ID=Ec-00_003930.1|Name=Ec-00_003930.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=447bp|location=Sequence derived from alignment at chr_00:4509576..4511439+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGTTGAAGACGAAGCATGCAACGCGGAGGAGCCCGATGTCGATGA
TGATGTTGAGACGGACCTGTCCTCCGTCAGGAACGTCTCCGGAGGCTCGG
ATCCGCCGGCCAGGGCGTCGGAGAGTGTTGTTTCCGGCGGTGGTGCTCGT
CGGCAGTCGACGGGGACTGCCCCGCAGGGTTCGTCTTCGCAGACAGTACC
TGCCCCGTCCACACGTCGCCAGTCCGCGCCCCCCGTTGCCGGTGCTGGTA
GCGGGAGCGGCGGCGGCAGCAGCAGTGCCGCGCCCGCAGCATCTTCCGCC
GCAACATCTTCGCAGAGCACCTCACGCAAGACTTCTGATCACGATAACGT
CCGCCATGACCCCGGCACGTTATGGTGGTTCTCGGCGGAGCTGCGGCAGG
CCCAATCTTCATCTACATGCTTCAGAAGCATATGGAGGAACACGTAA
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protein sequence of Ec-00_003930.1

>Ec-00_003930.1 ID=Ec-00_003930.1|Name=Ec-00_003930.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=149bp
MAVEDEACNAEEPDVDDDVETDLSSVRNVSGGSDPPARASESVVSGGGAR
RQSTGTAPQGSSSQTVPAPSTRRQSAPPVAGAGSGSGGGSSSAAPAASSA
ATSSQSTSRKTSDHDNVRHDPGTLWWFSAELRQAQSSSTCFRSIWRNT*
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mRNA from alignment at chr_00:4509576..4511439+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_003930.1 ID=Ec-00_003930.1|Name=Ec-00_003930.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1864bp|location=Sequence derived from alignment at chr_00:4509576..4511439+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGCCGTTGAAGACGAAGCATGCAACGTGCGTAAATGAGCGGCTACCGT
TGTTATTTTATTTTTTTAAGTTTTCGTACCATCAATACATGGCCTTGTCA
AATAGCTGGACCGTCCCTATGGTGTCATGTACCTGCACTGATAGGTACTG
CTGCCCTTTCTATTACAGTCGCGAACGCTCTTCCTTTTAATCGTGAACTC
CCTCTCTACGTGGCAGTTGAAAGGACAAAGTGTCGAGAGTGTGACGCACG
TATGCATGATGGCCTGTACATAATTTCCAAACACCAACCATCTACAAGCA
CAGCAGCATTTGGGACTTACATGCACCTGTGTCTGGTTCGCTCTGGACCC
AATTTGATGCAGATGAACTGCAGAGGGACATGTTGCGGAGTTTGAGCTAG
GTTCGGGGCTCTTGCCTTGATGGATGTGCTGGATGAGGAAACCTGTAGCT
TTCACCAACGACTGCTTTTTTCAAGGCGGCACAATATCTCGGGTTGTTGA
ATTTAGTATAAATAAAGGAAAAATAAATAAAGACTATCCATTCGAGATAT
ATTAGTTGCGCAAGAGCGAATAGCCAACAACTACGCTTCCATGTATGGGT
ACAACTTGTCCTCGAAGGTTTCAGATCGCATTCCGGCTAACCCCGAATCT
CGAGTCCTTTCAACGTCCTCTCGTCATAGCCGCATTATGACGCAATACGT
TGTGCCCAGCCACATCGCAAAACTTGCTCTAATTTTTGTGTCTGACCCGC
TTTTGTCGGGTTGCTTGTGTCTTTGTCTGTCCCAGGCGGAGGAGCCCGAT
GTCGATGATGATGTTGAGACGGACCTGTCCTCCGTCAGGAACGTCTCCGG
AGGCTCGGATCCGCCGGCCAGGGCGTCGGAGAGTGTTGTTTCCGGCGGTG
GTGCTCGTCGGCAGTCGACGGGGACTGCCCCGCAGGGTTCGTCTTCGCAG
ACAGTACCTGCCCCGTCCACACGTCGCCAGTCCGCGCCCCCCGTTGCCGG
TGCTGGTAGCGGGAGCGGCGGCGGCAGCAGCAGTGCCGCGCCCGCAGCAT
CTTCCGCCGCAACATCTTCGCAGAGCACCTCACGCAAGACTTCTGGTACG
TTTGGCGAGATCACACCCTCGCACCCTGCTGCTGCCTCCGGCTTCGGTTC
TGGTGCTGCCCCCGTCGCTGGTGATGCTGCCTCCGGCTCCGGTTCTTCTA
ATCGTGAGATCACGATAACGTCCGCCATGACCCCGGCACGTTATGGTGGT
TCTCGGCGGAGCTGCGGCAGGCCCAATCTTCATCTACATGCTTCAGAAGC
ATATGGAGGAACACGTGAGTAAAATAGGTCTTCCCTGAGAAAAGAATCAC
TTTTTGTGGGACAGATATGTTTTTATTTTGGATGAACGAGTCACATACAA
ACATTGATTTTGGGCATCCAGCACGCGTTCAACAATTGGGTCTTTCCCAT
AGAGTGGACGACGATAGAAGAAGGGGTTAACGTTATGGGTCTAACTCGAG
GTCCGCCCTCTTGCGTAGACACACCACTCTCATTGTTCCACTATGTTTTC
CATGACGTGGAGGCGTAGCCAGGACTCCTACATATACCTTGATGTGTATT
GGAATCCTTCCAACAGTCACACACACACATGGTCAATCGAGTACTTCCCA
TCATGCAGCAACGGAAAGAGTTGCAGTTTTCATCCTTGACACGAGGCCGA
GGGTCATGAATTATTGCGGCGTGCCGCACTCAACCTGTCGTCTGTTTGAT
GTTGTTCGATTCCTACAAAATGTATTCGTCACAGACGGCAATCCACACTC
TCCCTCCTGCCCCGCTTGATGTCCCGCCCGCCGTTGTTTTTCCCACTACA
TCCGTCGCAGGTAA
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Coding sequence (CDS) from alignment at chr_00:4509576..4511439+

>Ec-00_003930.1 ID=Ec-00_003930.1|Name=Ec-00_003930.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=447bp|location=Sequence derived from alignment at chr_00:4509576..4511439+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGCCGTTGAAGACGAAGCATGCAACGCGGAGGAGCCCGATGTCGATGA
TGATGTTGAGACGGACCTGTCCTCCGTCAGGAACGTCTCCGGAGGCTCGG
ATCCGCCGGCCAGGGCGTCGGAGAGTGTTGTTTCCGGCGGTGGTGCTCGT
CGGCAGTCGACGGGGACTGCCCCGCAGGGTTCGTCTTCGCAGACAGTACC
TGCCCCGTCCACACGTCGCCAGTCCGCGCCCCCCGTTGCCGGTGCTGGTA
GCGGGAGCGGCGGCGGCAGCAGCAGTGCCGCGCCCGCAGCATCTTCCGCC
GCAACATCTTCGCAGAGCACCTCACGCAAGACTTCTGATCACGATAACGT
CCGCCATGACCCCGGCACGTTATGGTGGTTCTCGGCGGAGCTGCGGCAGG
CCCAATCTTCATCTACATGCTTCAGAAGCATATGGAGGAACACGTAA
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Synonyms
The feature 'Ec-00_003930.1' has the following synonyms
Synonym
Esi0299_0004
Esi_0299_0004