Ec-00_003900.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_003900.1
Unique NameEc-00_003900.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length88
Homology
The following BLAST results are available for this feature:
BLAST of Ec-00_003900.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:4429762..4438204 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length264
Hectar predicted targeting categoryother localisation
Gene idEc-00_003900.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_003900Ec-00_003900Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 4429762..4438204 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003900.1.1Ec-00_003900.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 4429762..4429934 +
Ec-00_003900.1.2Ec-00_003900.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 4438114..4438204 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003900.1CDS:Ec-00_003900.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 4429762..4429934 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003900.1Ec-00_003900.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 4429762..4438204 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_003900.1 ID=Ec-00_003900.1|Name=Ec-00_003900.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=88bp
MMGAVRTEKEDSLQQTFGIETDLPITGMCDNVARVLERPRDIEIEAPPES
LSGWFTTWRRRQLPHHHRRRRRLPQPRHRSPPPLHRQ*
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spliced messenger RNA

>Ec-00_003900.1 ID=Ec-00_003900.1|Name=Ec-00_003900.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=264bp|location=Sequence derived from alignment at chr_00:4429762..4438204+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGGGGGCCGTCCGCACGGAGAAAGAGGACAGCCTGCAGCAGACATT
TGGCATAGAAACAGATCTCCCAATCACTGGCATGTGCGACAATGTTGCTC
GTGTGTTGGAGAGACCCCGAGACATCGAAATCGAGGCTCCACCTGAAAGC
TTATCGGGCTGGTTTACGACCTGGCGCCGCCGGCAACTTCCACACCACCA
TCGCCGGCGCCGCCGTCTACCGCAGCCACGCCACCGTTCACCACCGCCGC
TGCACCGTCAGTAA
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protein sequence of Ec-00_003900.1

>Ec-00_003900.1 ID=Ec-00_003900.1|Name=Ec-00_003900.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=88bp
MMGAVRTEKEDSLQQTFGIETDLPITGMCDNVARVLERPRDIEIEAPPES
LSGWFTTWRRRQLPHHHRRRRRLPQPRHRSPPPLHRQ*
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mRNA from alignment at chr_00:4429762..4438204+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_003900.1 ID=Ec-00_003900.1|Name=Ec-00_003900.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=8443bp|location=Sequence derived from alignment at chr_00:4429762..4438204+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGATGGGGGCCGTCCGCACGGAGAAAGAGGACAGCCTGCAGCAGACATT TGGCATAGAAACAGATCTCCCAATCACTGGCATGTGCGACAATGTTGCTC GTGTGTTGGAGAGACCCCGAGACATCGAAATCGAGGCTCCACCTGAAAGC TTATCGGGCTGGTTTACGACCTGGTGAGAGGAGAGGCGCAGAGTAGGCTT TCGTTTGACGATGCTTACTTGCGAGAGGATTTAGAAATGAACAACAACGC TTGCAAACAGTTCGGTTACTTGCGTCGATACGTTACTCCGAAATGGTCAC CGGTAGTCCGTTTAGTGGTTAACCTCGCAAACCTGCTAGTAGCAGGTTGC GGGTCAGATTATCTGCCTGGAGGTGTTTTGTCTTGGCTACAATTTCGTGT TGTCGGCAGGTGACGAGGTGGAGCGCGGCGTGCCTGTCAACGTATTAATC CGGTACAACACTCGAATGCTTACGCTTCGAAACTGGTAATAACGATTTCG TTGCGATGCATATCATGATCATAAGGCTACTAACAAACTCAACTCTGCGA TAGACAGTATCGCGACGATCGAGACTGTTGGGTTAGCAGCAGGTGGTCCA GCTGGGCAAGCAGCTGGTGGAAGTAGAGCATACGGCGGAGGTGGGTCCGA CGGTGGATACGGGGCCAACGAGAGAACGGCCCACAGAAAAAAAAAATGAA ACTCCCCGGCTTATGACGGGGACTTCGCCGTCTTCCCACTCTTGTCTTTC GGCCTAGAAGACTCTGTTCGTGGGTCTACGGACATGGTTTGGATATGTTA GCCGTACGTACAAGTGTGGCGCAGATGGTGTAGAACCTTTTAGGTAGGGG TACGGTGATGATGCACCGGGGCCCCCTTTTGTTGTGTGCAGCAGCCCTGC TGCCACTCCTCCTTTCTGAGCACGACAGCGCCCTGGGTACGGGCGTTGCC TCACCGTCTGAAGTTAATACACTACACAAACAATACCCGATAAGTACGCG GAGTACGGCCGACAAACACTCTAGAGTTATTTGTCCTTCGAGGGATAGCC GCATCGGGTGATGGCTGTGTCGGACAGCGGTTCGGTCGAAGGGCTGGGGG AAGAGACCTCAGCCATGCAACAGCAACACGCCGAGGACCCGGCGATTGCG AGACTGGAGGGCCAGTTATCGCAGCTGATGAGCATAGTGATGGAGCTTAA GAGGAAGGAGCCTGGCGACGCCGTGGCGGGCGATGCCAGTAGGGGCGGCG GTGCTGCCGTCCCAAGCCAGAGAGAGTCCTTGCCGTCAGAGGGCGGCAGG GCATTTTCCCGGGAAGCGGCCCGTGATGGGCCAAATCACCCGCGGGAAAG CCGCTGGGACAACATACCGGGAGCGAGTCCTGGGGTTCCAGCGAGAGTGG GGCCTGGCGTAGGAGCTGACCGCGGGGAAGCGAGGGGGTTAAACCCCCCA GAGTACCAACAAGCGAAGTTCCTGTTGGAGACGGCGACAAAGCTGGACAG GGGCGAGATCGTCAGGATCGTAAGCACGGTGCACGCGAGCCTCCCGGAGG GGAGGAAGGCCCCGAAGGGCCAGCGGAAGGCGGAGCATGCTTTCCTCGCG AGCGACGGTAACAGCAGGGGTGGAGCGCCCGGCCGCAGCAGCGGCGGCCG CAACAAGGGTGGCGGCGGCGGTGGTGGCGGCCAGAACGGGAAAGGGGCTG GCAGCAAGGGCGGTGGGGGCGGTGGTGGTGGCAACAGCGGCGGAGGCGGC GGCGGCGGTGCGAGTAGCATGCACGGCCGCTGCTTCCGGTGCGGAGAGAA GGGTCACCAGGCGGCCGCCTGTACCAAGCCCGAGCCCCTGCGATGCGAGA AGTGCCTGGGCTACGGACACGACAAGAGCACGTGCTCGTCCGAGCAGGCG GTGCTCGCGGTGGAGCTGCCGGTCTTGGACGCCACCGCACTGGACGTGGC AGAGGAGGCGCTAGTGGTCCGTGACTTCACAGGCGAGTGGAACAGAGTCG TTGATCGAGGGGGTGTAGAGCAGGCCAGGCAGGAAAGGTTTGTGGCCGAT ACCGGCGCAACCAACCACATGTTCCCGAGCGCTAACGCGTTCGAAAACTA CCATGAGTGCGATCGACGTTTGAGTCTCGCCGCAGGGAAGCAAGCCTTCG CCATCGTAGGGTATGGCGACGTGAGGGTGACCATCGGTTCTCGCGTTGGG ACCACAGACCTGTTGTTGAAACGGGTCGCTCATGTGCCGGAGCTCAACTA CAACCTCGTGTCCCTCACAGCCCTCTTGAAACAAACCAAGGGCCGCTTAG CCGCAGATGAGAACGAGTTGGAGGTGTTCGTTGGTGGGGGGGAGTCGGTG TACTTCCCTCTATGGGGGGACCTGTTCGTTCAGACTGGTCACCGCGTAGA GTCGGGTAGGGAACTAGCCTGTGCCATAATTGCTCCTGGTAACGCGAAAG CGAACCGCACCCCCGTTGACATCAACGACTTCCACTGCGCGCACGGCCAC TCCCACGAGGTGCTGCTGAAGAACACGGCGAAGCAGCAAGGGGTGACGCT GGTGGGCCAGCTCCGGGAGTGCATGGTTGCGGGCTGTGTCCCAATGGCAG GAGTAGGAGGCTTGCCTCGCATTCTTGTCTTCGCCTTGGCCTTCCTGATA AGTGCGGCCGTTGTGATCCGCCGTGATAGCAATGGTTTGTGTTGGATGGG ATTTATTTTCGAGGGGTTTTGCCCGGGCGCCGGGTTTCCCCTGGACCACC GTATTGGCATTTTAATGATGTATCCGGGGTGTTTTTGCCCCACTGATGGT TAGTCACTTGCGTGAAGAACCAGGGAGGGTGTTGGTGGGTCTACGGACAT GGTTGGGATATGTTAGCCGTACGTACAAGTGTGACGCAGATGGTGTAGAA CCTTTTAGGTAGGGGTACGGTGATGATGCACCGGGGCCCCCTTTTGTTGT GTGCAGCAGCCCTGCTGCCATTCCTCCTTTCTGAGCACGACAACGCCCTG GGTACGGGCGTTGCCTCACCGTCTGAAGTTAATACACTACACAAACAATA CCCGATAAGTACGCGGAGTACGGCCGACAAGCAGACTCCAATCGGCGCAA GCACCGGTAGGAGAGTGCGTGAAAGATGCCGTGACAGCACAACTCCACTT TCCTACGACATCTATGCACATGCTGTCGTTGTAGCACCACGTATGTGGAA AATCTCGGAGGGATCCTCCTGCGCGGTAACGACAACGTCGTGAGAGCTCT GCGTGTGTACCTGTCGTCGATACATGTGGCAGCCGCACGACACACGAAAG GATGTTTGCATCGCATTGTAGTATGGTTCGCCGTGGCAGGAAATATCTCG TCCAGTTAGGTCTGTAGCAAAAACACAGCAGCAGCAGTAATCGAGCTATG CATGCAACGTTTTGCTGTGGCTGCAGGCAGACGTTTCGCCTCCACGTCTC GAGAATCCCACTCCTGTATCTCGACCTACAAGACTCCAATCAACAAACCA GCACTGGAAGAAGTGCGTGGGAGATGCCGTGTGATAGATATACTTGTAGC AATGCCAAGTGGTTGATACGGAATGTTCCCATCATGTTATATATATACTT ACAGGATGGTCGTCGTGACGTGAACATTTTGTTGTTATTAGTATGGAAAA AAATAAAAAAAAAGATGGCTCGATTTTTGAATTTCTACAGCAGTATGGAC CAGACGCCGACTTTACATGGAAGTCGTACGAATGTCGACTTAGTTGTGCT GTCACAGCATCTTCCACGCACTTCTGCCAGTGCTGGTTTGTTGATCGGAG TCTTGTAGGTCGAGATACAGCGGTGGGATTCTCGGGTTGTGGAGGCAAAA GTGAACCAGAGCAAAACATTTCATGCATAGCTCGATTACTGCTGCTGTGT TTTTGCTACAGCAGTATGGACTAGACGCCGAACGACGTCCGCGTGCTACA AGTACCGCAACGACCTAACGGGATGGGATACTTGCTGCCACGGCGAACCA TAGTGCAATGCGATGCAAACATCCGTTCGTGTGTCGCGCGGCTGCCACAT GTGTCGACGACAGGTACACGTAGAGCTCTCGCCATGTTGTCGTTACCGCG CAGGGGCACCCCTCGGAGATGTTCCACATGGTGCTACAACGACAGCAGTA CTACTGTACATAGACGTCGAAGGAGAGTGGAGCTGTGCTGTCACGGCATC TTCCACGCACTCTCCTACTGGTGCTTGTGTCGATTGGAGTCTTGTAGGCC GAAATACCAGAGTGGGTTCGACTCTCGGGTTGTGGAAGCAAACCTGCCTG CAACAACAGAGAAGGCGGTGTTCTATGTATCATAGAGTATCCCGCTCAAC TTTTTTTTTTTCGCGGCATGTGGTCGCATATTTCTATGCCACTGTCGAAA ACGACCGCTGGATCTTTTACGTAGTACATCTTTTGCATTTATCATTTTAC ACTCCGACTGTACATGGAAGTCGTACGAGTGTCGAGATAGTTGTGCTGTC ACAGCATCTTCTACGCACTTCTGCCAGGGCTGGTTTGTTGATTGGAGTCT TGTAGGTCGAGATACAGCAGTGGGATTCTCGGGTTGTGGAGGCAAAAAGT GAACCAGACCAAAATTTTCATGCATAGCTCGATTACTGCTGTGTTTTTCC TACAGCAGTATGGACTAGACGTCGAACGACGTCCGCGTACTGCCGCAACG ACCTAACTGCATGGGATACTTCCTGCCACGGCGAACCATAGTACAGTACG ATGCAAACATCCGTTCGTGTGTCGCGCGGCCGCCACATGTGTCGACGACA GGTACACGTAGAGCTCTCGCCATGTTGTCGCAGAAGGACCCTCCGCAGAT CTTCCACAACATGGTGCTACAACGACAGCAGTACTACTGCAGTACATAGA TGTCGTAGGAGAGTGAAGTTGCGTTGTCTGGGCATCTTCCACGCACTCTC CTACCGGTGTTTGCGTCGATTGGAGTCTTGTAGGCCGAAATACAAGAGTG GTTTGGGTCTGTTCGTGTGTGCATGAGCGGATGAGAATCTTCCAACGGGA CTGTAGGAATTGGCTACGCAGATAGGAATTGATAGTCCCCTGGGTTGGTT TCATGGTTGATCCACGGGGCTCGACCCTGCGAGAGTGCTTGCTGTGTCGT GGCACTCTCTTTCTCCCGCCGCGTCCTGATCGTGCCTGCTGTCCTAAATA CAAGTCATACCATCATCTTCAACACACTTACATGGGTATACTAACACTCT AGAGTGTATCCCTCGCGGGAACCCGTGCTGGAGATGAGTGACGCCGATGT TGCAGCAGAGGCTGTCGACGTCACCACTAGTACGCAGGGCAGGGTTGACA ACCTGGAGAGCAAAGTTTCAGGCCTGACGGACGAGATACAGCAGCTGGCA GGGCTGCTCTGAGCCGCCCTCGGAAAGTTAGACAAGGAGGTGGAGTCCGG CGGCGCTGGGGTAGGCGCTATCATCACGGGCACTACGTCCACCGGCGGTG CCCATGATGTCCGAGATTCGTCTAGAGAAGGACAGAGTACGGATAATAGT GGAATGCTTGGGCGGAGATGGAGGCGCGAATGAAGAAGAAGCAGGAGAGT GTGAGGGCTTATGCCCTCATCAGTAGCGGTGAGAACCGTAGTGGCGGGGG CGGGAACACGGAGGGCCCAGGGAAGACGAGAGGAGAACGGAGAACGGCAA CGCGGCAACAGCAGCAACAGCCGCAGCAGCCACAGCAGCAGCATCAGCTG TACTTCAACCAGCAGCAACAGGTATACCCGCCGCCGTACCCGCCTGAGAT AAAATATTGTGACCTCCACAACTCCTCGTCCCACAGCAACGAGGAGTGTC GCTTGTAGCAAGCTTGGGGCGGCCAAGGTGCGAGCTACGGCGGAAGGCAC GGGCCCCAGCATGGGGGCCGAGGCTTTTCTGGAGGAGGACGTCGTCAGCA GCAGCCGGCAAGAGGAAGACACTAGGGACGTGTCGCCAATCCCGGTGGAT GGGGCAGAGGCCCTCCTCACCAGGGAGCAACAGGCAGCAACCTTCCCGCC TACCCCGTGTCTCAGCAGGGGTACGACTACAGCGCGTACCCTCCGAACCT CTACCGCCCCCAAGGAAACGAGCCGCCCATCCACGCAGCAGATCCGAGAA AGCGGTACGATAGCTGCGGTGGGATAGGTCACAACCACATCTTCAGCCCT TCACGGGTGGATGTAGGCAGACCAGCCGGCTAGCCCACACCGCTCGCCCC GCCCCGCCCGCCGGCCGCCGGATACAACACCCGGTGGCCCCAGTGGGCCC ACTTCTAGGGCCAGGCTCACGGCGCACAACAGTACGGCGGGGGGGCGCAC GAGACAGGAGCAGCGACAGGAGCGTCAGCAGGAGCGGCGGCAGGAGCACA ACAGCAAGCGGTGATGCACGTGAGCGGCGTTTACCAAAATCCGGTGACGC ACGCGAGCGGTGTTTACGAGTACCCGCCCCAACACCAGCAGCCGGAGTAC CTTTCCCCCCCCGTGCAACAGCATCAGTCCATCCCCAACCCGTACGCTCC TCCGACGCCTTCGACCGGAACGTCTCCATCGACTGGTGGGGATTTGCAGG TATGTGTGGTGTGGGCTTTTCCAAGTGAGCCTGAGAATGGTGTGCTGGTA GAGCGTAGGGTCGAAGGTTTTGCAATGATGAACGTGATTGACGAGAGTGT AGGAGACGAAACTTGGCTTGCAGACTCTGACGCCACGAGAAGCGTTGTTG TGCCAACCCCCGTCTCTGGTTTCCCGCCCGCTGCCAGCAGCGTAGTACAT TCTGGCGACCCCACCGCTCACAGGTATATTTTTCATGCCCCCGTGTCGAA TTCTCCGCCCGCTGATGCCGGCGTACTACCCTCTCCCGTGTCCGGTTTCC CGCCCGCTACGAGTAGCGTCGTTCCTCCGGCAAATGTATGCCCCCTCCCC CGCTGACAGGAGTTGTGGCTTCTTCTTCCGCTCCTCAAGTGCCGCATGGA ATGGAGTTGGTGGCTGTTCCCGGGCTGCCCTCGCCCGACGTCTCCGTTTT TCAGGAGAGTATTGACGATGATGACCGTAGGTGCATTTCGTACACAGAGC AGGGAGATTACAAGTGGGCTGTGTACCTCTTGGAAACGAAGAGAAGAATC AGAAGACCCTCATGAATTTTTAGACTTGATGTTATAGTCTGGGTTTGCGA ATGTCTTCGATGATGTTCCCTTTGCCGTCCCCGTCATGGCCCCGGGCAAG CGACCTTTTTCGGTGAGGAAACACACCACCATTGTTGACATCAATCTTCT CCACGTGTCGTGTTCCCATGCGGATGAGGTTTTGTTGCGTGAGCTTTCAA AGCAGCACGGCCTCCGCCTGACAGGTGTTCGGCAGCCTTGTGGTGGTTGC CTGGAGGCGAAGGGGAAGAAGGCGGGCGTGCCCCATACAATGGGCGCGCG CGGGCAGGCCGCACGATCTTTGGCACATCGATCTGTGTGGGCCCATGACG GCGTCGCTGGGGGGGTCGTTTTTCATGATCATTTTCGTGGACAGCTTCTC GCGGTGGATGAAGCTGTACGGGATGAGGCGCAAGTCGGACACCCTCGCCT TCGTCAAGAAGTTCCTCGCCGATATGAGTGGCACCGGTGTTCCTCGTTCT TTCCGGATGGACAACAGGGGGGAGTTCTTAAGCCGCGACTTCATCGCCTT CTGACTACAACCGCGGCATCCGCCGTACGTACACGGCGCTGGACACCCCG CAACAGAATAGTCCAGCGGAGAGCGCGATCTGGCGCGTGAACAAGGCCGG CCACGCCGCTCGTCTGGAGGCATGCCGCCTGTTCCCCAAGTTCGACTTTA CCCGCATCCCCGGTTACGGGCGCGATGGCGAGCGCCTTTGGCTAGAGTCC TGTCACTGGGCAGCCGGCGGCTTCAACCGTTCCCCGACCAAGGCAAACGT CGGGTACAAGTCGCCGCACGAGCTTTTCATCGGTCGCCCGCCCCCGCTCC AAATCGTCCCGTTCTTGCAGCCGGGGTACATGCTTGTGACGCGTGCGCGG AAGATGGATCCCCAGGCAGTGCTGTGCTGCTACCTCAACAACGGCGACAA CCACCACGACTCGGCGTTCAAGGTCCTGGAGTTTGCGACGGGGCGCGTAT GCATGACGAACAACGTTGTGTGGGTCTCCAACCGCGCGCCATTGCTGACC CCGCCGCTGGAGCTGCCGGCGCCGGCGGGCGAGGGGAGGAATTCAGATGT CGCCGCCGCACCGACGTTTCTAGTTGAGTACATTGCGCCGCCTCTCTTAC CCCATAACTGTTCGCCCGAACTCCCACTTCACCCGCTGCCATACCCTTAC AGGCGCCGCCGGCAACTTCCACACCACCATCGCCGGCGCCGCCGTCTACC GCAGCCACGCCACCGTTCACCACCGCCGCTGCACCGTCAGTAA
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Coding sequence (CDS) from alignment at chr_00:4429762..4438204+

>Ec-00_003900.1 ID=Ec-00_003900.1|Name=Ec-00_003900.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=264bp|location=Sequence derived from alignment at chr_00:4429762..4438204+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGATGGGGGCCGTCCGCACGGAGAAAGAGGACAGCCTGCAGCAGACATT
TGGCATAGAAACAGATCTCCCAATCACTGGCATGTGCGACAATGTTGCTC
GTGTGTTGGAGAGACCCCGAGACATCGAAATCGAGGCTCCACCTGAAAGC
TTATCGGGCTGGTTTACGACCTGGCGCCGCCGGCAACTTCCACACCACCA
TCGCCGGCGCCGCCGTCTACCGCAGCCACGCCACCGTTCACCACCGCCGC
TGCACCGTCAGTAA
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Synonyms
The feature 'Ec-00_003900.1' has the following synonyms
Synonym
Esi284_0050
Esi_284_0050