Ec-00_003890.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_003890.1
Unique NameEc-00_003890.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length170
Homology
[Close]
BLAST of Ec-00_003890.1 vs. uniprot
Match: D7FV00_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV00_ECTSI)

HSP 1 Score: 343 bits (881), Expect = 1.090e-119
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 1 
Query:    1 MEMFARIRDAIGDLFARRSGERAWGKGVNEAKVRHLVSTAASLPGPFAGFKINPIRQGDTGCFNLPEDTDELASRCLEGAATSDGGRVGVPVANDWSGACVWIALASGELNERCSTGGGALALRTAAMRMALLKSPEFLSRDGYLAEYRSPNLFDLKEHDMVLKLAGRE 507
            MEMFARIRDAIGDLFARRSGERAWGKGVNEAKVRHLVSTAASLPGPFAGFKINPIRQGDTGCFNLPEDTDELASRCLEGAATSDGGRVGVPVANDWSGACVWIALASGELNERCSTGGGALALRTAAMRMALLKSPEFLSRDGYLAEYRSPNLFDLKEHDMVLKLAGRE
Sbjct:    1 MEMFARIRDAIGDLFARRSGERAWGKGVNEAKVRHLVSTAASLPGPFAGFKINPIRQGDTGCFNLPEDTDELASRCLEGAATSDGGRVGVPVANDWSGACVWIALASGELNERCSTGGGALALRTAAMRMALLKSPEFLSRDGYLAEYRSPNLFDLKEHDMVLKLAGRE 169
[Close]
BLAST of Ec-00_003890.1 vs. uniprot
Match: D7G0G8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0G8_ECTSI)

HSP 1 Score: 297 bits (761), Expect = 1.830e-100
Identity = 148/167 (88.62%), Postives = 155/167 (92.81%), Query Frame = 1 
Query:    7 MFARIRDAIGDLFARRSGERAWGKGVNEAKVRHLVSTAASLPGPFAGFKINPIRQGDTGCFNLPEDTDELASRCLEGAATSDGGRVGVPVANDWSGACVWIALASGELNERCSTGGGALALRTAAMRMALLKSPEFLSRDGYLAEYRSPNLFDLKEHDMVLKLAGRE 507
            M ARI+DAI DLFA+RSGERAW KGV EA+VRHLVS AA L  PFAGFKINPIRQGDTGCFNLPEDTDELASRCLEGAATSDGG+VG+PVAND  GACVWIALASG L+ERCSTGG ALALRTAAMRMALLKSPEFLSRDGYLAEYRSP+LFDLKEHDMVLKLAGRE
Sbjct:    1 MLARIKDAIDDLFAKRSGERAWEKGVTEAEVRHLVSMAAGLLDPFAGFKINPIRQGDTGCFNLPEDTDELASRCLEGAATSDGGQVGIPVANDGLGACVWIALASGALSERCSTGGAALALRTAAMRMALLKSPEFLSRDGYLAEYRSPDLFDLKEHDMVLKLAGRE 167
[Close]
BLAST of Ec-00_003890.1 vs. uniprot
Match: A0A6H5JT31_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT31_9PHAE)

HSP 1 Score: 233 bits (595), Expect = 5.940e-72
Identity = 118/167 (70.66%), Postives = 132/167 (79.04%), Query Frame = 1 
Query:    7 MFARIRDAIGDLFARRSG-ERAWGKGVNEAKVRHLVSTAASLPGPFAGFKINPIRQGDTGCFNLPEDTDELASRCLEGAATSDGGRVGVPVANDWSGACVWIALASGELNERCSTGGGALALRTAAMRMALLKSPEFLSRDGYLAEYRSPNLFDLKEHDMVLKLAGR 504
            + A I D+I   FA+R G   AW  GV+  +V+ LVS  AS+P PFAGFK+NPI + D+GCFNLPED D+LASRCLEGAATSDGG VGVPV N+  GAC WIALASG LN RCSTGG ALALRT AMRMALLK  EFLS DGYLAEYRS +LFD KEHDMV+KLAGR
Sbjct:    8 VLATIEDSIDVFFAKREGGTEAWKNGVSAREVQGLVSLGASIPDPFAGFKLNPIPEADSGCFNLPEDIDKLASRCLEGAATSDGGGVGVPVVNEGKGACFWIALASGALNTRCSTGGAALALRTGAMRMALLKCEEFLSADGYLAEYRSGDLFDTKEHDMVMKLAGR 174
[Close]
BLAST of Ec-00_003890.1 vs. uniprot
Match: D8LEN6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEN6_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 1.030e-7
Identity = 24/27 (88.89%), Postives = 24/27 (88.89%), Query Frame = 1 
Query:  118 AASLPGPFAGFKINPIRQGDTGCFNLP 198
            AA LP PFAGFKINP RQGDTGCFNLP
Sbjct:    2 AAGLPDPFAGFKINPTRQGDTGCFNLP 28
The following BLAST results are available for this feature:
BLAST of Ec-00_003890.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FV00_ECTSI1.090e-119100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G0G8_ECTSI1.830e-10088.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JT31_9PHAE5.940e-7270.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LEN6_ECTSI1.030e-788.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:4373265..4374091 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length510
Hectar predicted targeting categoryother localisation
Gene idEc-00_003890.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_003890Ec-00_003890Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 4373265..4374091 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003890.1.1Ec-00_003890.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 4373265..4373435 +
Ec-00_003890.1.2Ec-00_003890.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 4373753..4374091 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003890.1CDS:Ec-00_003890.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 4373265..4373435 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003890.1Ec-00_003890.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 4373265..4374091 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_003890.1 ID=Ec-00_003890.1|Name=Ec-00_003890.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=170bp
MEMFARIRDAIGDLFARRSGERAWGKGVNEAKVRHLVSTAASLPGPFAGF
KINPIRQGDTGCFNLPEDTDELASRCLEGAATSDGGRVGVPVANDWSGAC
VWIALASGELNERCSTGGGALALRTAAMRMALLKSPEFLSRDGYLAEYRS
PNLFDLKEHDMVLKLAGRE*
back to top

spliced messenger RNA

>Ec-00_003890.1 ID=Ec-00_003890.1|Name=Ec-00_003890.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=510bp|location=Sequence derived from alignment at chr_00:4373265..4374091+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGATGTTCGCCAGGATCAGAGACGCCATCGGTGATTTATTTGCGAG
GAGAAGTGGTGAACGCGCGTGGGGAAAAGGCGTGAATGAGGCAAAGGTCC
GACACCTAGTTTCTACGGCTGCCAGTTTGCCCGGTCCCTTTGCCGGATTC
AAGATAAACCCCATCCGACAGGGGGATACGGGATGTTTCAACCTTCCTGA
GGACACCGACGAACTTGCCAGTCGGTGTTTGGAAGGGGCCGCGACATCCG
ATGGTGGGCGGGTGGGGGTTCCCGTTGCAAACGACTGGTCGGGTGCTTGT
GTTTGGATCGCCCTTGCTTCCGGGGAGCTCAACGAACGGTGTTCCACCGG
GGGTGGTGCGCTTGCCCTCCGTACAGCAGCCATGCGGATGGCGCTGCTGA
AGAGCCCCGAGTTCCTGAGCCGTGACGGGTACCTTGCCGAGTACCGTTCT
CCCAACCTCTTCGATCTAAAGGAACACGACATGGTGCTTAAGCTTGCAGG
TCGCGAGTGA
back to top

protein sequence of Ec-00_003890.1

>Ec-00_003890.1 ID=Ec-00_003890.1|Name=Ec-00_003890.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=170bp
MEMFARIRDAIGDLFARRSGERAWGKGVNEAKVRHLVSTAASLPGPFAGF
KINPIRQGDTGCFNLPEDTDELASRCLEGAATSDGGRVGVPVANDWSGAC
VWIALASGELNERCSTGGGALALRTAAMRMALLKSPEFLSRDGYLAEYRS
PNLFDLKEHDMVLKLAGRE*
back to top

mRNA from alignment at chr_00:4373265..4374091+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_003890.1 ID=Ec-00_003890.1|Name=Ec-00_003890.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=827bp|location=Sequence derived from alignment at chr_00:4373265..4374091+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGAGATGTTCGCCAGGATCAGAGACGCCATCGGTGATTTATTTGCGAG
GAGAAGTGGTGAACGCGCGTGGGGAAAAGGCGTGAATGAGGCAAAGGTCC
GACACCTAGTTTCTACGGCTGCCAGTTTGCCCGGTCCCTTTGCCGGATTC
AAGATAAACCCCATCCGACAGGTGAGCCCCGCCAGGGAAAATAATGTTGG
AATGCAGTTTTTTATGGGCAAGGGCGCGATATTTCATGTATTACCACGAA
AGCAGGAACCGACGTGGCACGTCCCCTCCCATTGGCAAAAAAAACAATCC
CTTGTACGCCCGTACGAAGCGTCATTGCAGTGTGTTGTGCTCAGCAACGG
AAAGGGGGGTTGTCCTCTGCAGCATTTTTTTTCTGTGGTGAGGTAGGAAT
GCCAGTCGGAAAACATGAAACCACAGCCAGCCGTGTGCTCCTGGCATAAT
TGTTTTCCGCCACGAAACCACCCCCGATGATTGTGTAGGGGGATACGGGA
TGTTTCAACCTTCCTGAGGACACCGACGAACTTGCCAGTCGGTGTTTGGA
AGGGGCCGCGACATCCGATGGTGGGCGGGTGGGGGTTCCCGTTGCAAACG
ACTGGTCGGGTGCTTGTGTTTGGATCGCCCTTGCTTCCGGGGAGCTCAAC
GAACGGTGTTCCACCGGGGGTGGTGCGCTTGCCCTCCGTACAGCAGCCAT
GCGGATGGCGCTGCTGAAGAGCCCCGAGTTCCTGAGCCGTGACGGGTACC
TTGCCGAGTACCGTTCTCCCAACCTCTTCGATCTAAAGGAACACGACATG
GTGCTTAAGCTTGCAGGTCGCGAGTGA
back to top

Coding sequence (CDS) from alignment at chr_00:4373265..4374091+

>Ec-00_003890.1 ID=Ec-00_003890.1|Name=Ec-00_003890.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=510bp|location=Sequence derived from alignment at chr_00:4373265..4374091+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGAGATGTTCGCCAGGATCAGAGACGCCATCGGTGATTTATTTGCGAG
GAGAAGTGGTGAACGCGCGTGGGGAAAAGGCGTGAATGAGGCAAAGGTCC
GACACCTAGTTTCTACGGCTGCCAGTTTGCCCGGTCCCTTTGCCGGATTC
AAGATAAACCCCATCCGACAGGGGGATACGGGATGTTTCAACCTTCCTGA
GGACACCGACGAACTTGCCAGTCGGTGTTTGGAAGGGGCCGCGACATCCG
ATGGTGGGCGGGTGGGGGTTCCCGTTGCAAACGACTGGTCGGGTGCTTGT
GTTTGGATCGCCCTTGCTTCCGGGGAGCTCAACGAACGGTGTTCCACCGG
GGGTGGTGCGCTTGCCCTCCGTACAGCAGCCATGCGGATGGCGCTGCTGA
AGAGCCCCGAGTTCCTGAGCCGTGACGGGTACCTTGCCGAGTACCGTTCT
CCCAACCTCTTCGATCTAAAGGAACACGACATGGTGCTTAAGCTTGCAGG
TCGCGAGTGA
back to top
Synonyms
The feature 'Ec-00_003890.1' has the following synonyms
Synonym
Esi0284_0018
Esi_0284_0018