Ec-00_003880.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_003880.1
Unique NameEc-00_003880.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length151
Homology
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BLAST of Ec-00_003880.1 vs. uniprot
Match: D7FUZ9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUZ9_ECTSI)

HSP 1 Score: 250 bits (638), Expect = 2.950e-83
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 1 
Query:    1 MDVLRDAEKTEKSTGVGSPTFRRLSAVKQVVEHVVDLVHHHGVLLVSGEHVLLHGAKEVQPEPLSAAGGASXXXXXXXXXXXXXXXGASASVPLMAGLQHVDLTGGMGARGSTVSGASGSGADTAAAKARDDAELIKLLDSPPTATNAKG 450
            MDVLRDAEKTEKSTGVGSPTFRRLSAVKQVVEHVVDLVHHHGVLLVSGEHVLLHGAKEVQPEPLSAAGGASXXXXXXXXXXXXXXXGASASVPLMAGLQHVDLTGGMGARGSTVSGASGSGADTAAAKARDDAELIKLLDSPPTATNAKG
Sbjct:    1 MDVLRDAEKTEKSTGVGSPTFRRLSAVKQVVEHVVDLVHHHGVLLVSGEHVLLHGAKEVQPEPLSAAGGASXXXXXXXXXXXXXXXGASASVPLMAGLQHVDLTGGMGARGSTVSGASGSGADTAAAKARDDAELIKLLDSPPTATNAKG 150
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BLAST of Ec-00_003880.1 vs. uniprot
Match: D7FZQ8_ECTSI (CCHC-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZQ8_ECTSI)

HSP 1 Score: 236 bits (602), Expect = 2.790e-74
Identity = 144/149 (96.64%), Postives = 145/149 (97.32%), Query Frame = 1 
Query:    1 MDVLRDAEKTEKSTGVGSPTFRRLSAVKQVVEHVVDLVHHHGVLLVSGEHVLLHGAKEVQPEPLSAAGGASXXXXXXXXXXXXXXXGASASVPLMAGLQHVDLTGGMGARGSTVSGASGSGADTAAAKARDDAELIKLLDSPPTATNAK 447
            MDVLRDAEKTEKSTGVGSPTFRRLSAVKQVVEHVVDLVHHH VLLVSGEHVLLHGAKEVQPEPLSAAGGASXXXXXXXXXXXXXXXGASASVP MAGLQHVDLTGGMGARGSTVS  SGSGADTAAAKARDDAELIKLLDSPPTATNA+
Sbjct:    1 MDVLRDAEKTEKSTGVGSPTFRRLSAVKQVVEHVVDLVHHHDVLLVSGEHVLLHGAKEVQPEPLSAAGGASXXXXXXXXXXXXXXXGASASVPPMAGLQHVDLTGGMGARGSTVSXXSGSGADTAAAKARDDAELIKLLDSPPTATNAE 149
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BLAST of Ec-00_003880.1 vs. uniprot
Match: A0A6H5KEJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEJ6_9PHAE)

HSP 1 Score: 166 bits (421), Expect = 1.000e-48
Identity = 104/127 (81.89%), Postives = 105/127 (82.68%), Query Frame = 1 
Query:    1 MDVLRDAEKTEKSTGVGSPTFRRLSAVKQVVEHVVDLVHHHGVLLVSGEHVLLHGAKEVQPEPLSAAGGASXXXXXXXXXXXXXXXGASASVPLMAGLQHVDLTGGMGARGSTVSGASGSGADTAAA 381
            MDVLRDAEKT KSTGVGSPTFR+LSAVKQVVEHVVDLVHHHGVLLVSGEHVLLHGAKEVQPEP SAAGGASXXXXXXXXX      GASASVP MAGLQHVDLTGG           SGS ADT AA
Sbjct:    1 MDVLRDAEKTGKSTGVGSPTFRQLSAVKQVVEHVVDLVHHHGVLLVSGEHVLLHGAKEVQPEPPSAAGGASXXXXXXXXXSVGSGAGASASVPPMAGLQHVDLTGGAXXXXXXXXXXSGSEADTTAA 127
The following BLAST results are available for this feature:
BLAST of Ec-00_003880.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FUZ9_ECTSI2.950e-83100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FZQ8_ECTSI2.790e-7496.64CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KEJ6_9PHAE1.000e-4881.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:4367995..4368871 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length453
Hectar predicted targeting categoryother localisation
Gene idEc-00_003880.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_003880Ec-00_003880Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 4367995..4368871 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003880.1.2Ec-00_003880.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 4367995..4368000 -
Ec-00_003880.1.1Ec-00_003880.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 4368425..4368871 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003880.1CDS:Ec-00_003880.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 4367995..4368000 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003880.1Ec-00_003880.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 4367995..4368871 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_003880.1 ID=Ec-00_003880.1|Name=Ec-00_003880.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=151bp
MDVLRDAEKTEKSTGVGSPTFRRLSAVKQVVEHVVDLVHHHGVLLVSGEH
VLLHGAKEVQPEPLSAAGGASAAGGAAAGGSGRSGAGASASVPLMAGLQH
VDLTGGMGARGSTVSGASGSGADTAAAKARDDAELIKLLDSPPTATNAKG
*
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spliced messenger RNA

>Ec-00_003880.1 ID=Ec-00_003880.1|Name=Ec-00_003880.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=453bp|location=Sequence derived from alignment at chr_00:4367995..4368871- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGTCCTGCGTGACGCCGAGAAGACAGAAAAGTCAACCGGCGTGGG
GTCTCCTACCTTCCGCCGGTTGAGCGCGGTGAAGCAGGTGGTGGAGCATG
TTGTCGACCTAGTCCACCATCACGGTGTACTGCTTGTGTCGGGAGAGCAT
GTGCTGCTTCACGGGGCAAAGGAGGTGCAGCCGGAGCCCCTTTCCGCGGC
CGGAGGGGCTTCCGCGGCCGGAGGAGCAGCCGCGGGAGGATCGGGGCGCT
CGGGAGCTGGGGCGTCGGCTAGTGTTCCTCTGATGGCGGGTCTGCAGCAC
GTAGACCTCACCGGGGGAATGGGGGCCCGGGGCTCGACCGTGAGCGGAGC
GAGCGGGAGTGGAGCGGACACGGCGGCCGCCAAAGCTCGTGACGATGCGG
AGCTCATCAAGCTCTTGGACTCCCCTCCGACCGCCACGAACGCGAAGGGG
TAG
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protein sequence of Ec-00_003880.1

>Ec-00_003880.1 ID=Ec-00_003880.1|Name=Ec-00_003880.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=151bp
MDVLRDAEKTEKSTGVGSPTFRRLSAVKQVVEHVVDLVHHHGVLLVSGEH
VLLHGAKEVQPEPLSAAGGASAAGGAAAGGSGRSGAGASASVPLMAGLQH
VDLTGGMGARGSTVSGASGSGADTAAAKARDDAELIKLLDSPPTATNAKG
*
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mRNA from alignment at chr_00:4367995..4368871-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_003880.1 ID=Ec-00_003880.1|Name=Ec-00_003880.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=877bp|location=Sequence derived from alignment at chr_00:4367995..4368871- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGACGTCCTGCGTGACGCCGAGAAGACAGAAAAGTCAACCGGCGTGGG
GTCTCCTACCTTCCGCCGGTTGAGCGCGGTGAAGCAGGTGGTGGAGCATG
TTGTCGACCTAGTCCACCATCACGGTGTACTGCTTGTGTCGGGAGAGCAT
GTGCTGCTTCACGGGGCAAAGGAGGTGCAGCCGGAGCCCCTTTCCGCGGC
CGGAGGGGCTTCCGCGGCCGGAGGAGCAGCCGCGGGAGGATCGGGGCGCT
CGGGAGCTGGGGCGTCGGCTAGTGTTCCTCTGATGGCGGGTCTGCAGCAC
GTAGACCTCACCGGGGGAATGGGGGCCCGGGGCTCGACCGTGAGCGGAGC
GAGCGGGAGTGGAGCGGACACGGCGGCCGCCAAAGCTCGTGACGATGCGG
AGCTCATCAAGCTCTTGGACTCCCCTCCGACCGCCACGAACGCGAAGGTG
GGTCTCGAATGCTATACCCCGCCGCCTTTCCCGATTTTGAGTTGCATGTT
CGTTTGCTTTTGACTGATACACGTTTATTTCAACTATTATGTTTGAACGT
TCGTTTCCGCGTGGTCGGAAGCTCGCCCGGTCAACTATTATGTTTGAACG
TTCGCTTCCGCCTTGCCGGACGCTCGCCGCTTGGTTTGTGTCTTCCGGGG
AGGGGGGGGGCTCGGCGCTTCTTCACTCGAGGCTCTATGGCGTAGCTCGC
GCCCGCCCCTCACAGCTGGGCTGTCACCTACCACCACTTTCCCTACCACA
TGAACGACCTGTCAGATAACTTGGTTGGGTAGCCTCTAAACTGGCTCCTT
CCGCTTGCGCATGCGTTCAATAATAATTTCGGCAAACGTAAAACACGTGC
ACACTACCGTCCTGGCCGCAGGGGTAG
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Coding sequence (CDS) from alignment at chr_00:4367995..4368871-

>Ec-00_003880.1 ID=Ec-00_003880.1|Name=Ec-00_003880.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=453bp|location=Sequence derived from alignment at chr_00:4367995..4368871- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGACGTCCTGCGTGACGCCGAGAAGACAGAAAAGTCAACCGGCGTGGG
GTCTCCTACCTTCCGCCGGTTGAGCGCGGTGAAGCAGGTGGTGGAGCATG
TTGTCGACCTAGTCCACCATCACGGTGTACTGCTTGTGTCGGGAGAGCAT
GTGCTGCTTCACGGGGCAAAGGAGGTGCAGCCGGAGCCCCTTTCCGCGGC
CGGAGGGGCTTCCGCGGCCGGAGGAGCAGCCGCGGGAGGATCGGGGCGCT
CGGGAGCTGGGGCGTCGGCTAGTGTTCCTCTGATGGCGGGTCTGCAGCAC
GTAGACCTCACCGGGGGAATGGGGGCCCGGGGCTCGACCGTGAGCGGAGC
GAGCGGGAGTGGAGCGGACACGGCGGCCGCCAAAGCTCGTGACGATGCGG
AGCTCATCAAGCTCTTGGACTCCCCTCCGACCGCCACGAACGCGAAGGGG
TAG
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Synonyms
The feature 'Ec-00_003880.1' has the following synonyms
Synonym
Esi0284_0014
Esi_0284_0014