Ec-00_003850.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_003850.1
Unique NameEc-00_003850.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length364
Homology
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BLAST of Ec-00_003850.1 vs. uniprot
Match: D8LJH5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJH5_ECTSI)

HSP 1 Score: 718 bits (1853), Expect = 2.270e-261
Identity = 363/363 (100.00%), Postives = 363/363 (100.00%), Query Frame = 1 
Query:    1 MAMEGKKGDIIALQTKLRDSLKQELARVRVNAEAKENMSPVYAFYAMALYPASPFSVGFTAHLRRTRNNSHGWLDVRALYNCVLEAFTEDDAAYFSANDNKRLAAVVRMAEKWIPVLMSFVGGSYKDDGMGRDVFQTGITKKVFKKGFGRIERKFPALTNTSTLISGCNTRSGELIPAFVSTSTTVVPVNKQVLLEYIDPCTEKGYDARVMYLTFAVLVVDRALSRGQKCDDVPQRFHDLWAAMPNCTKPLKDALLSSADDLVLRDSNGEIGEYFFDDSRLRFFDAQKADSGVGVSGVGKDQGVSGNPQSSKSSRVVATCARGIFYGSVPTSFLKDLGVVTDAGNKAVYVTLAVDDEDYLEDS 1089
            MAMEGKKGDIIALQTKLRDSLKQELARVRVNAEAKENMSPVYAFYAMALYPASPFSVGFTAHLRRTRNNSHGWLDVRALYNCVLEAFTEDDAAYFSANDNKRLAAVVRMAEKWIPVLMSFVGGSYKDDGMGRDVFQTGITKKVFKKGFGRIERKFPALTNTSTLISGCNTRSGELIPAFVSTSTTVVPVNKQVLLEYIDPCTEKGYDARVMYLTFAVLVVDRALSRGQKCDDVPQRFHDLWAAMPNCTKPLKDALLSSADDLVLRDSNGEIGEYFFDDSRLRFFDAQKADSGVGVSGVGKDQGVSGNPQSSKSSRVVATCARGIFYGSVPTSFLKDLGVVTDAGNKAVYVTLAVDDEDYLEDS
Sbjct:    1 MAMEGKKGDIIALQTKLRDSLKQELARVRVNAEAKENMSPVYAFYAMALYPASPFSVGFTAHLRRTRNNSHGWLDVRALYNCVLEAFTEDDAAYFSANDNKRLAAVVRMAEKWIPVLMSFVGGSYKDDGMGRDVFQTGITKKVFKKGFGRIERKFPALTNTSTLISGCNTRSGELIPAFVSTSTTVVPVNKQVLLEYIDPCTEKGYDARVMYLTFAVLVVDRALSRGQKCDDVPQRFHDLWAAMPNCTKPLKDALLSSADDLVLRDSNGEIGEYFFDDSRLRFFDAQKADSGVGVSGVGKDQGVSGNPQSSKSSRVVATCARGIFYGSVPTSFLKDLGVVTDAGNKAVYVTLAVDDEDYLEDS 363
The following BLAST results are available for this feature:
BLAST of Ec-00_003850.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LJH5_ECTSI2.270e-261100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:4301104..4303565 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length1092
Hectar predicted targeting categoryother localisation
Gene idEc-00_003850.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_003850Ec-00_003850Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 4301104..4303565 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003850.1.4Ec-00_003850.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 4301104..4301288 -
Ec-00_003850.1.3Ec-00_003850.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 4301751..4302066 -
Ec-00_003850.1.2Ec-00_003850.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 4302301..4302684 -
Ec-00_003850.1.1Ec-00_003850.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 4303359..4303565 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003850.1CDS:Ec-00_003850.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 4301104..4301288 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003850.1Ec-00_003850.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 4301104..4303565 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_003850.1 ID=Ec-00_003850.1|Name=Ec-00_003850.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=364bp
MAMEGKKGDIIALQTKLRDSLKQELARVRVNAEAKENMSPVYAFYAMALY
PASPFSVGFTAHLRRTRNNSHGWLDVRALYNCVLEAFTEDDAAYFSANDN
KRLAAVVRMAEKWIPVLMSFVGGSYKDDGMGRDVFQTGITKKVFKKGFGR
IERKFPALTNTSTLISGCNTRSGELIPAFVSTSTTVVPVNKQVLLEYIDP
CTEKGYDARVMYLTFAVLVVDRALSRGQKCDDVPQRFHDLWAAMPNCTKP
LKDALLSSADDLVLRDSNGEIGEYFFDDSRLRFFDAQKADSGVGVSGVGK
DQGVSGNPQSSKSSRVVATCARGIFYGSVPTSFLKDLGVVTDAGNKAVYV
TLAVDDEDYLEDS*
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spliced messenger RNA

>Ec-00_003850.1 ID=Ec-00_003850.1|Name=Ec-00_003850.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1092bp|location=Sequence derived from alignment at chr_00:4301104..4303565- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAATGGAGGGCAAGAAGGGAGACATCATCGCCTTACAGACGAAGCT
GAGGGATAGCCTAAAACAAGAGCTGGCTCGTGTCCGTGTCAACGCCGAAG
CCAAGGAGAACATGTCGCCGGTTTATGCTTTTTACGCAATGGCACTCTAC
CCCGCGAGCCCGTTCTCCGTTGGCTTCACCGCGCATCTAAGGCGGACAAG
GAACAACAGTCACGGATGGCTTGACGTGAGGGCACTGTACAATTGTGTAC
TCGAAGCATTCACGGAGGACGATGCGGCATATTTCAGTGCCAACGACAAC
AAGCGCCTAGCCGCCGTCGTTCGTATGGCGGAGAAATGGATCCCGGTCCT
GATGTCCTTCGTAGGGGGGTCTTACAAAGACGACGGCATGGGAAGGGATG
TTTTCCAGACTGGAATAACAAAGAAGGTTTTCAAGAAAGGCTTCGGGCGG
ATAGAGAGGAAATTCCCGGCACTTACCAACACGTCTACGCTCATCAGTGG
CTGCAACACCAGGAGTGGAGAGCTGATTCCTGCGTTCGTGTCAACTTCTA
CCACGGTCGTGCCCGTCAACAAGCAGGTTCTGCTGGAGTACATCGACCCT
TGCACCGAGAAGGGCTACGATGCCAGGGTCATGTACTTGACCTTCGCGGT
CTTGGTGGTTGACCGTGCCCTGTCCCGAGGTCAAAAATGCGACGACGTAC
CTCAGAGATTCCATGACCTATGGGCGGCTATGCCCAACTGCACGAAGCCG
TTGAAGGATGCACTCCTGTCCAGCGCTGATGATCTTGTGCTGCGCGACTC
CAATGGGGAGATAGGAGAATATTTCTTCGACGACAGCCGCCTTCGTTTTT
TCGATGCCCAAAAGGCGGATTCGGGCGTCGGCGTTTCGGGCGTCGGCAAG
GACCAAGGAGTGTCTGGAAATCCGCAATCGTCGAAGAGTAGTCGGGTGGT
GGCTACGTGCGCACGAGGGATATTCTACGGCTCAGTTCCAACGTCCTTCC
TGAAGGATCTTGGCGTGGTGACGGATGCTGGAAATAAAGCCGTCTATGTC
ACCCTGGCGGTGGACGACGAAGATTATCTCGAGGATTCATGA
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protein sequence of Ec-00_003850.1

>Ec-00_003850.1 ID=Ec-00_003850.1|Name=Ec-00_003850.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=364bp
MAMEGKKGDIIALQTKLRDSLKQELARVRVNAEAKENMSPVYAFYAMALY
PASPFSVGFTAHLRRTRNNSHGWLDVRALYNCVLEAFTEDDAAYFSANDN
KRLAAVVRMAEKWIPVLMSFVGGSYKDDGMGRDVFQTGITKKVFKKGFGR
IERKFPALTNTSTLISGCNTRSGELIPAFVSTSTTVVPVNKQVLLEYIDP
CTEKGYDARVMYLTFAVLVVDRALSRGQKCDDVPQRFHDLWAAMPNCTKP
LKDALLSSADDLVLRDSNGEIGEYFFDDSRLRFFDAQKADSGVGVSGVGK
DQGVSGNPQSSKSSRVVATCARGIFYGSVPTSFLKDLGVVTDAGNKAVYV
TLAVDDEDYLEDS*
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mRNA from alignment at chr_00:4301104..4303565-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_003850.1 ID=Ec-00_003850.1|Name=Ec-00_003850.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2462bp|location=Sequence derived from alignment at chr_00:4301104..4303565- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGCAATGGAGGGCAAGAAGGGAGACATCATCGCCTTACAGACGAAGCT
GAGGGATAGCCTAAAACAAGAGCTGGCTCGTGTCCGTGTCAACGCCGAAG
CCAAGGAGAACATGTCGCCGGTTTATGCTTTTTACGCAATGGCACTCTAC
CCCGCGAGCCCGTTCTCCGTTGGCTTCACCGCGCATCTAAGGCGGACAAG
GAACAACGTGAGACCATTCAGTATACAGCGACGAAGGTTTACAATGTTGG
TTGGCTTAGTTCGTCCTGATGTTACAATGTGCTTTGGGGGCATGAAGGCT
TCCTTGGTCTTGCTGTCTTTCTTCCGTCTTGCATCACCCGTTTATGGGAC
TGTCGTCTCATGACACTACGATGCGAGGCATCGCTTGAAACATTATTCTT
TTTCCCCGAGGAATCGCTTGAAAGGTAGTTCAGAGCATTTTACTTTCCTT
CCATCGCCTGTGGGACAACGACGTCAGCGGCGTCGGTTGTATTGGGTGGT
GTGGTACGACGTGCGTTAGGATCATTCGCTATTTTGCCATTCATTTCCGT
TTGCACACGACAGGATCTGCTACTGGTGGGCCTGACCTCAAGGTTATTGG
TGCACTAATGCGATTATCGGCGCACTCGCAGAGGAAGGAACACCTGTGGA
CCGAACTGGAACGGGTCGGGTGAACGCATGGAGCACGTAAATACATGCGC
GAGCAGCTTCGTGTTGAGATTTTCGAAGAGTTGGTATCGTCGCTCGCCCT
TCGAGTACATGTTGACTACTTCTGCGAGCCCAATGTTTTTGACAAGTCGT
TGGACTGTAGCCCGAAAAGGGTACCGAAATCATCGCGGGGGCACGCGTCG
ACAAATGAAACGGGCGGCAAGTCGGATGCAGAGTCACGGATGGCTTGACG
TGAGGGCACTGTACAATTGTGTACTCGAAGCATTCACGGAGGACGATGCG
GCATATTTCAGTGCCAACGACAACAAGCGCCTAGCCGCCGTCGTTCGTAT
GGCGGAGAAATGGATCCCGGTCCTGATGTCCTTCGTAGGGGGGTCTTACA
AAGACGACGGCATGGGAAGGGATGTTTTCCAGACTGGAATAACAAAGAAG
GTTTTCAAGAAAGGCTTCGGGCGGATAGAGAGGAAATTCCCGGCACTTAC
CAACACGTCTACGCTCATCAGTGGCTGCAACACCAGGAGTGGAGAGCTGA
TTCCTGCGTTCGTGTCAACTTCTACCACGGTCGTGCCCGTCAACAAGCAG
GTTCTGCTGGAGTACGTGAGTGTCGACAAGAGAGTATTCTTACACCAACC
CTCATGTTCTTACGCCAACCCTCATTTTCTTTGGTCGGTTTCGAGTAAGA
TATGTCTGTGCGTTGTGCGTCCTCAATTGTGCGTTATGCGTCCTCAATTT
TGTCGTTGTTCGTTGCATCCTCTTTGTGGTGCTTTCACTATGTAACGTTT
CTCCTGCCTACACCCTACTTGTACCTGTGCTGCCCTGTCTCTCTCAAAGA
TCGACCCTTGCACCGAGAAGGGCTACGATGCCAGGGTCATGTACTTGACC
TTCGCGGTCTTGGTGGTTGACCGTGCCCTGTCCCGAGGTCAAAAATGCGA
CGACGTACCTCAGAGATTCCATGACCTATGGGCGGCTATGCCCAACTGCA
CGAAGCCGTTGAAGGATGCACTCCTGTCCAGCGCTGATGATCTTGTGCTG
CGCGACTCCAATGGGGAGATAGGAGAATATTTCTTCGACGACAGCCGCCT
TCGTTTTTTCGATGCCCAAAAGGCGGATTCGGGCGTCGGCGTTTCGGGCG
TCGGCAAGGACCAAGGTAGGTACTCTCGGAATGCCCGTCCTTTTACGTCG
ATATATTCTGCTTGTGTTGTGCAATTCACGTGGATGCGCTACTAGGGGAA
ACCAAGGGTACGCTTTGGGAGAAAATGAGCTACGCAACAAGGACGTAATT
CCGTTGATACGATATTTGGAGAATGAGGAGGAAACGGGGCTACGCCACCG
CGCAGGAAATATGGTCGGCTCCGAGTAGCAGGTTTATCGTCTCGTTCAGA
ACTGTTCCGAGAGTGACGTGTAGAATAACGAACTACAAACAAGGGCAAAG
TCTGGCGATACGCTAATAAGAGAAACGCAGATACGCACCGCGTAGAAAAT
ATTGTTGGCTCCCGGAACTCTCGTTCAGTAGTTGCAAGGGATGGTGTCTA
TTAATCTCGCTGCTGCCAATGTTGTTGCCCCCCCGTGCTGCACCGGTGAA
CTCCGGTGGTTTCGAACTAATGTGCAGGAGTGTCTGGAAATCCGCAATCG
TCGAAGAGTAGTCGGGTGGTGGCTACGTGCGCACGAGGGATATTCTACGG
CTCAGTTCCAACGTCCTTCCTGAAGGATCTTGGCGTGGTGACGGATGCTG
GAAATAAAGCCGTCTATGTCACCCTGGCGGTGGACGACGAAGATTATCTC
GAGGATTCATGA
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Coding sequence (CDS) from alignment at chr_00:4301104..4303565-

>Ec-00_003850.1 ID=Ec-00_003850.1|Name=Ec-00_003850.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=1092bp|location=Sequence derived from alignment at chr_00:4301104..4303565- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGCAATGGAGGGCAAGAAGGGAGACATCATCGCCTTACAGACGAAGCT
GAGGGATAGCCTAAAACAAGAGCTGGCTCGTGTCCGTGTCAACGCCGAAG
CCAAGGAGAACATGTCGCCGGTTTATGCTTTTTACGCAATGGCACTCTAC
CCCGCGAGCCCGTTCTCCGTTGGCTTCACCGCGCATCTAAGGCGGACAAG
GAACAACAGTCACGGATGGCTTGACGTGAGGGCACTGTACAATTGTGTAC
TCGAAGCATTCACGGAGGACGATGCGGCATATTTCAGTGCCAACGACAAC
AAGCGCCTAGCCGCCGTCGTTCGTATGGCGGAGAAATGGATCCCGGTCCT
GATGTCCTTCGTAGGGGGGTCTTACAAAGACGACGGCATGGGAAGGGATG
TTTTCCAGACTGGAATAACAAAGAAGGTTTTCAAGAAAGGCTTCGGGCGG
ATAGAGAGGAAATTCCCGGCACTTACCAACACGTCTACGCTCATCAGTGG
CTGCAACACCAGGAGTGGAGAGCTGATTCCTGCGTTCGTGTCAACTTCTA
CCACGGTCGTGCCCGTCAACAAGCAGGTTCTGCTGGAGTACATCGACCCT
TGCACCGAGAAGGGCTACGATGCCAGGGTCATGTACTTGACCTTCGCGGT
CTTGGTGGTTGACCGTGCCCTGTCCCGAGGTCAAAAATGCGACGACGTAC
CTCAGAGATTCCATGACCTATGGGCGGCTATGCCCAACTGCACGAAGCCG
TTGAAGGATGCACTCCTGTCCAGCGCTGATGATCTTGTGCTGCGCGACTC
CAATGGGGAGATAGGAGAATATTTCTTCGACGACAGCCGCCTTCGTTTTT
TCGATGCCCAAAAGGCGGATTCGGGCGTCGGCGTTTCGGGCGTCGGCAAG
GACCAAGGAGTGTCTGGAAATCCGCAATCGTCGAAGAGTAGTCGGGTGGT
GGCTACGTGCGCACGAGGGATATTCTACGGCTCAGTTCCAACGTCCTTCC
TGAAGGATCTTGGCGTGGTGACGGATGCTGGAAATAAAGCCGTCTATGTC
ACCCTGGCGGTGGACGACGAAGATTATCTCGAGGATTCATGA
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Synonyms
The feature 'Ec-00_003850.1' has the following synonyms
Synonym
Esi0258_0045
Esi_0258_0045