Ec-00_003800.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_003800.1
Unique NameEc-00_003800.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length242
Homology
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BLAST of Ec-00_003800.1 vs. uniprot
Match: D8LJH1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJH1_ECTSI)

HSP 1 Score: 508 bits (1309), Expect = 1.480e-182
Identity = 241/241 (100.00%), Postives = 241/241 (100.00%), Query Frame = 1 
Query:    1 MPTPYFVVRFWAPGRARFLLGLTSVNTERRSTCFVKLWTGQRSTQVRLENGSTFSGEEAFLLLLMRMRYPGRLSDLEKYFGREYSQLSRLFRWATDFLFEMHSHRVMDNLAFWGPHLRSFARAVYRKGRAFGLTYEDICGFIEGTLRRQPGGHDDIQREVYDGHHRDHGLAYQAVMAPNGMLMDAWGPVSGRRHDSYLLGVSEFNPRLAAVQDPEGPQMKVYGDAPTRCLATCAGSLRGLI 723
            MPTPYFVVRFWAPGRARFLLGLTSVNTERRSTCFVKLWTGQRSTQVRLENGSTFSGEEAFLLLLMRMRYPGRLSDLEKYFGREYSQLSRLFRWATDFLFEMHSHRVMDNLAFWGPHLRSFARAVYRKGRAFGLTYEDICGFIEGTLRRQPGGHDDIQREVYDGHHRDHGLAYQAVMAPNGMLMDAWGPVSGRRHDSYLLGVSEFNPRLAAVQDPEGPQMKVYGDAPTRCLATCAGSLRGLI
Sbjct:    1 MPTPYFVVRFWAPGRARFLLGLTSVNTERRSTCFVKLWTGQRSTQVRLENGSTFSGEEAFLLLLMRMRYPGRLSDLEKYFGREYSQLSRLFRWATDFLFEMHSHRVMDNLAFWGPHLRSFARAVYRKGRAFGLTYEDICGFIEGTLRRQPGGHDDIQREVYDGHHRDHGLAYQAVMAPNGMLMDAWGPVSGRRHDSYLLGVSEFNPRLAAVQDPEGPQMKVYGDAPTRCLATCAGSLRGLI 241
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BLAST of Ec-00_003800.1 vs. uniprot
Match: A0A6H5J8N3_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8N3_9PHAE)

HSP 1 Score: 164 bits (414), Expect = 1.980e-46
Identity = 89/173 (51.45%), Postives = 98/173 (56.65%), Query Frame = 1 
Query:  136 VRLENGSTFSGEEAFLLLLMRMRYPGRLSDLEKYFGREYSQLSRLFRWATDFLFEMHSHRVMDNLAFWGPHLRSFARAVYRKGRAFGLTYEDICGFIEGTLRR--QPGGHDDIQREVYDGHHRDHGLAYQAVMAPNGMLMDAWGPVSGRRHDSYLLGVSEFNPRLAAVQDPEG 648
            + LENG  F GEEAFLLLLMRM                                                           KGR  GLTY+DIC FI+GTLRR  +P GHDDIQREVYDGHHRDHGL YQAV AP+ M++DAWGPVSGRRHD YLL VSE +PRLAAVQDP+G
Sbjct:  136 IGLENGCVFRGEEAFLLLLMRMS----------------------------------------------------------KGRPLGLTYDDICAFIDGTLRRFCRPDGHDDIQREVYDGHHRDHGLVYQAVQAPSAMIIDAWGPVSGRRHDLYLLRVSELSPRLAAVQDPDG 250
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BLAST of Ec-00_003800.1 vs. uniprot
Match: UPI00138FD820 (uncharacterized protein LOC116621079 n=2 Tax=Nematostella vectensis TaxID=45351 RepID=UPI00138FD820)

HSP 1 Score: 124 bits (312), Expect = 5.330e-31
Identity = 72/180 (40.00%), Postives = 106/180 (58.89%), Query Frame = 1 
Query:  148 NGSTFSGEEAFLLLLMRMRYPGRLSDLEKYFGREYSQLSRLFRWATDFLFEMHSHRVMD-NLAFWGP-HLRSFARAVYRKGRAFGLTYEDICGFIEGTLRR--QPGGHDDIQREVYDGHHRDHGLAYQAVMAPNGMLMDAWGPVSGRRHDSYLLGVSEFNPRLAAVQDPEGPQ-MKVYGD 672
            NG+  SG E  L+ L R  YP RL D+   FGR   +LS +    TDF+   H H ++D N  +  P  L SFARA+ RKG A     ++  GF++GT+R   +PG H   QR +Y+GH R HG+ +Q+V+APNG++ + +GPV G+RHD+ +L +S    +L      +  Q + +YGD
Sbjct:   75 NGTVSSGLEGLLMFLRRFAYPCRLGDMIPRFGRSIPELSLILSEVTDFIVNTHGHLLLDLNQPWLQPFQLESFARAISRKGAAL----DNCWGFVDGTVRPICRPGEH---QRIMYNGHKRVHGIKFQSVVAPNGLIANLFGPVEGKRHDARMLQMSGLLHQLQQYSVDQARQPLCIYGD 247
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BLAST of Ec-00_003800.1 vs. uniprot
Match: A0A226EBT7_FOLCA (DDE Tnp4 domain-containing protein n=1 Tax=Folsomia candida TaxID=158441 RepID=A0A226EBT7_FOLCA)

HSP 1 Score: 124 bits (312), Expect = 2.050e-30
Identity = 71/185 (38.38%), Postives = 105/185 (56.76%), Query Frame = 1 
Query:  133 QVRLENGSTFSGEEAFLLLLMRMRYPGRLSDLEKYFGREYSQLSRLFRWATDFLFEMHSHRVMDNLAFW--GPHLRSFARAVYRKGRAFGLTYEDICGFIEGTLRR--QPGGHDDIQREVYDGHHRDHGLAYQAVMAPNGMLMDAWGPVSGRRHDSYLLGVSEFNPRLAAVQDPEGPQ-MKVYGD 672
            ++R   G  F G E F +LL R+ YP RL DL+  FGR   +LS +F    D++++           +W    HL++++ A+  KG A     +   GFI+GTL    +P  H   Q+EVY GH R HGL YQ+V+ PNG++ + +GPVSGRRHDSY+L  S     +  +Q+  G + + +YGD
Sbjct:   57 EMRTPQGLKFLGAEGFCILLRRLAYPNRLLDLQPIFGRREEELSHIFNTVLDYIYDNFRWLTESWKQWWLQVDHLKAYSDAITAKGSAL----QTCFGFIDGTLHATCRPTRH---QQEVYSGHKRQHGLKYQSVVLPNGLIANLYGPVSGRRHDSYMLAESNL---MWNLQNHLGAENLHLYGD 231
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BLAST of Ec-00_003800.1 vs. uniprot
Match: A0A226DFP6_FOLCA (DDE Tnp4 domain-containing protein n=1 Tax=Folsomia candida TaxID=158441 RepID=A0A226DFP6_FOLCA)

HSP 1 Score: 122 bits (305), Expect = 3.120e-30
Identity = 72/185 (38.92%), Postives = 105/185 (56.76%), Query Frame = 1 
Query:  136 VRLENGSTFSGEEAFLLLLMRMRYPGRLSDLEKYFGREYSQLSRLFRWATDFLFEMHSHRVMDNLAFWG---PHLRSFARAVYRKGRAFGLTYEDICGFIEGTLRR--QPGGHDDIQREVYDGHHRDHGLAYQAVMAPNGMLMDAWGPVSGRRHDSYLLGVSEFNPRLAAVQDPEGPQMKVYGDA 675
            +++ N + FSG     ++L R+ YP RLSDL+KYFG     LS +F    + ++    H ++ +L  W     HL+ F+ A+ RKG           GFI+GTL +  +P      Q+EVY GH R HGL YQ+V+ PNGM+ + +GP+ GRRHDSY+L  S    +LA      G +M +YGD+
Sbjct:   73 LKMPNRTEFSGLICLCVMLRRLAYPNRLSDLQKYFGFSPQDLSYIFNSMINHVYGNFYH-LLTSLQLWWLSLEHLKEFSGALVRKG----CPIPSWIGFIDGTLHKTCRPTR---SQQEVYSGHKRSHGLKYQSVVTPNGMVANIYGPIPGRRHDSYMLHESGLLDKLAVHLG--GQEMYLYGDS 247
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BLAST of Ec-00_003800.1 vs. uniprot
Match: UPI001CF32E60 (uncharacterized protein LOC122955919 n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF32E60)

HSP 1 Score: 121 bits (304), Expect = 1.700e-29
Identity = 71/180 (39.44%), Postives = 105/180 (58.33%), Query Frame = 1 
Query:  148 NGSTFSGEEAFLLLLMRMRYPGRLSDLEKYFGREYSQLSRLFRWATDFLFEMHSHRVMD-NLAFWGPH-LRSFARAVYRKGRAFGLTYEDICGFIEGTLRR--QPGGHDDIQREVYDGHHRDHGLAYQAVMAPNGMLMDAWGPVSGRRHDSYLLGVSEFNPRLAAVQ-DPEGPQMKVYGD 672
            NG+  SGEE  L+LL R  YP RLSD+   FGR   ++S +    T  + E   H + D N  +  PH L  FA  +++KG A     ++  GF++GT+R   +PG H   QR +++GH R HGL +Q+V+APNGM+ + +GPV G+RHDS +L +S    +L     +  G  + +YGD
Sbjct:   34 NGTVASGEEGLLMLLKRFAYPCRLSDMVPRFGRSVPEISLILTEVTKHVVETQGHLLKDLNQPWLQPHHLEEFALVIHQKGAAL----DNCWGFVDGTVRPICRPGEH---QRLMFNGHKRVHGLKFQSVVAPNGMIANLFGPVEGKRHDSAMLRMSGLLGQLEQYSFNQTGRPLCIYGD 206
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BLAST of Ec-00_003800.1 vs. uniprot
Match: A0A6S7GNP4_PARCT (DDE Tnp4 domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7GNP4_PARCT)

HSP 1 Score: 120 bits (300), Expect = 1.800e-28
Identity = 68/177 (38.42%), Postives = 103/177 (58.19%), Query Frame = 1 
Query:  151 GSTFSGEEAFLLLLMRMRYPGRLSDLEKYFGREYSQLSRLFRWATDFLFEMHSHRVMD-NLAFWGPHLRSFARAVYRKGRAFGLTYEDICGFIEGTLRR--QPGGHDDIQREVYDGHHRDHGLAYQAVMAPNGMLMDAWGPVSGRRHDSYLLGVSEFNPRLAAVQDPEGPQMKVYGD 672
            GS F+G E  +++L R+ YP R  DL K FGR  ++LS LF    + ++   +H +   +LA+  P +  FA AV+ KG      +    GFI+GT RR  +P  + ++   +Y GH R H + +Q+V+APNG++   +GP+ GRRHD+++LGVS   P L  +  P G    VYGD
Sbjct:   92 GSVFNGMEGLMVMLRRLTYPNRWCDLVKIFGRSEAELSILFNMVINDIYTRFNHLLTSLDLAWLDPAI--FADAVHCKGAPLNQCW----GFIDGTTRRIARPVRNQNV---MYSGHKRIHCIKFQSVLAPNGLIAHLFGPIEGRRHDAFMLGVSGLLPLLERIIKPNGEPYVVYGD 259
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BLAST of Ec-00_003800.1 vs. uniprot
Match: UPI001604DA6B (uncharacterized protein LOC118435899 n=1 Tax=Folsomia candida TaxID=158441 RepID=UPI001604DA6B)

HSP 1 Score: 115 bits (289), Expect = 2.020e-28
Identity = 68/168 (40.48%), Postives = 96/168 (57.14%), Query Frame = 1 
Query:  187 LLMRMRYPGRLSDLEKYFGREYSQLSRLFRWATDFLFEMHSHRVMDNLAFWG---PHLRSFARAVYRKGRAFGLTYEDICGFIEGTLRR--QPGGHDDIQREVYDGHHRDHGLAYQAVMAPNGMLMDAWGPVSGRRHDSYLLGVSEFNPRLAAVQDPEGPQMKVYGDA 675
            +L R+ YP RLSDL+KYFG     LS +F    + ++    H ++ +L  W     HL+ F+ A+ RKG           GFI+GTL +  +P      Q+EVY GH R HGL YQ+V+ PNGM+ + +GP+ GRRHDSY+L  S    +LA      G +M +YGD+
Sbjct:    1 MLRRLAYPNRLSDLQKYFGFSPQDLSYIFNSMINHVYGNFYH-LLTSLQLWWLSLEHLKEFSGALVRKG----CPIPSCIGFIDGTLHKTCRPTR---SQQEVYSGHKRSHGLKYQSVVTPNGMVANLYGPIPGRRHDSYMLHESGLLDKLAVHLG--GQEMYLYGDS 158
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BLAST of Ec-00_003800.1 vs. uniprot
Match: UPI00106A3D78 (uncharacterized protein LOC114524220 isoform X2 n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106A3D78)

HSP 1 Score: 117 bits (293), Expect = 4.410e-28
Identity = 69/179 (38.55%), Postives = 100/179 (55.87%), Query Frame = 1 
Query:  151 GSTFSGEEAFLLLLMRMRYPGRLSDLEKYFGREYSQLSRLFRWATDFLFEMHSHRVM--DNLAFWGPHLRSFARAVYRKGRAFGLTYEDICGFIEGTLRR--QPGGHDDIQREVYDGHHRDHGLAYQAVMAPNGMLMDAWGPVSGRRHDSYLLGVSEFNPRLAA-VQDPEGPQMKVYGD 672
            G+   G E   L+L R+ YP RLSDL   FGR   +LS +F     F++E H+HR+   +NL      L  +A A+  KG A  LT  +  GF++GT++   +P   D+ Q+ VY+GH R H L +Q+V+ PNGM+ + +GPV G+RHD+ +L  S     L        G  M +YGD
Sbjct:   85 GTICDGTEGLCLMLRRLAYPCRLSDLVPRFGRPVPELSMIFNEVISFVYERHNHRIKQWNNLLLNPIQLERYAEAITNKGAA--LT--NCFGFVDGTVKAICRP---DEHQKHVYNGHKRHHALKFQSVVTPNGMIANLYGPVEGKRHDAGMLRYSGLMEMLEEHAYGTNGQPMCIYGD 256
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BLAST of Ec-00_003800.1 vs. uniprot
Match: UPI001CF2D10D (uncharacterized protein LOC114971351 n=2 Tax=Acropora TaxID=6127 RepID=UPI001CF2D10D)

HSP 1 Score: 119 bits (297), Expect = 4.560e-28
Identity = 69/180 (38.33%), Postives = 106/180 (58.89%), Query Frame = 1 
Query:  148 NGSTFSGEEAFLLLLMRMRYPGRLSDLEKYFGREYSQLSRLFRWATDFLFEMHSHRVMD-NLAFWGPH-LRSFARAVYRKGRAFGLTYEDICGFIEGTLRR--QPGGHDDIQREVYDGHHRDHGLAYQAVMAPNGMLMDAWGPVSGRRHDSYLLGVSEFNPRLAAVQ-DPEGPQMKVYGD 672
            NG+  SG E   +LL R  YP RLSD+   FGR   +LS +     ++++  H H + D N  +  P+ L++FA A++RKG A      +  GFI+ T+R   +PG   + QR +Y+GH R HG+ +Q+V+APNGM+ + +GPV G+RHD+ +L +S    +L      P G  + +YGD
Sbjct:   85 NGTAASGIEGLCMLLKRFTYPCRLSDMIPRFGRSVPELSLILSEVCNYVYITHGHLLSDLNEPWLQPNQLQAFADAIHRKGAAL----NNCWGFIDKTVRPVCRPG---ENQRVLYNGHKRVHGIKFQSVVAPNGMIANLYGPVEGKRHDAGMLAMSNLLNQLQQYSYSPNGQPLCIYGD 257
The following BLAST results are available for this feature:
BLAST of Ec-00_003800.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJH1_ECTSI1.480e-182100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J8N3_9PHAE1.980e-4651.45DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
UPI00138FD8205.330e-3140.00uncharacterized protein LOC116621079 n=2 Tax=Nemat... [more]
A0A226EBT7_FOLCA2.050e-3038.38DDE Tnp4 domain-containing protein n=1 Tax=Folsomi... [more]
A0A226DFP6_FOLCA3.120e-3038.92DDE Tnp4 domain-containing protein n=1 Tax=Folsomi... [more]
UPI001CF32E601.700e-2939.44uncharacterized protein LOC122955919 n=1 Tax=Acrop... [more]
A0A6S7GNP4_PARCT1.800e-2838.42DDE Tnp4 domain-containing protein n=1 Tax=Paramur... [more]
UPI001604DA6B2.020e-2840.48uncharacterized protein LOC118435899 n=1 Tax=Folso... [more]
UPI00106A3D784.410e-2838.55uncharacterized protein LOC114524220 isoform X2 n=... [more]
UPI001CF2D10D4.560e-2838.33uncharacterized protein LOC114971351 n=2 Tax=Acrop... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:4154379..4159311 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score126.3
Seed ortholog evalue1.9e-26
Seed eggNOG ortholog7668.SPU_016560-tr
Length726
Hectar predicted targeting categoryother localisation
Gene idEc-00_003800.1
EggNOG free text desc.DDE superfamily endonuclease
EggNOG OGs2AWDH@1,2RZYI@2759,3A38W@33154,3BS4I@33208,3D9UV@33213
COG Functional cat.S
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_003800Ec-00_003800Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 4154379..4159311 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003800.1Ec-00_003800.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 4154379..4159311 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003800.1.5Ec-00_003800.1.5Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 4154379..4154627 -
Ec-00_003800.1.4Ec-00_003800.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 4155225..4155319 -
Ec-00_003800.1.3Ec-00_003800.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 4156927..4157105 -
Ec-00_003800.1.2Ec-00_003800.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 4157812..4157882 -
Ec-00_003800.1.1Ec-00_003800.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 4159180..4159311 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003800.1CDS:Ec-00_003800.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 4154379..4154627 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_003800.1 ID=Ec-00_003800.1|Name=Ec-00_003800.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=242bp
MPTPYFVVRFWAPGRARFLLGLTSVNTERRSTCFVKLWTGQRSTQVRLEN
GSTFSGEEAFLLLLMRMRYPGRLSDLEKYFGREYSQLSRLFRWATDFLFE
MHSHRVMDNLAFWGPHLRSFARAVYRKGRAFGLTYEDICGFIEGTLRRQP
GGHDDIQREVYDGHHRDHGLAYQAVMAPNGMLMDAWGPVSGRRHDSYLLG
VSEFNPRLAAVQDPEGPQMKVYGDAPTRCLATCAGSLRGLI*
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spliced messenger RNA

>Ec-00_003800.1 ID=Ec-00_003800.1|Name=Ec-00_003800.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=726bp|location=Sequence derived from alignment at chr_00:4154379..4159311- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCACGCCGTATTTCGTTGTTAGATTCTGGGCACCTGGCCGTGCACG
CTTTCTGCTCGGGCTTACTAGTGTGAACACAGAAAGAAGAAGCACTTGCT
TCGTGAAGCTATGGACCGGACAACGTAGCACGCAAGTTAGGCTGGAGAAT
GGATCGACGTTTAGCGGAGAGGAGGCATTCCTGCTTCTTCTCATGAGGAT
GAGGTACCCGGGTCGCTTGTCGGACCTCGAGAAATACTTCGGCCGCGAGT
ACTCGCAGCTTAGCCGTCTCTTTCGGTGGGCCACGGATTTCCTGTTCGAA
ATGCACAGCCACCGCGTGATGGACAATCTGGCGTTCTGGGGGCCACACCT
CAGGAGCTTCGCCCGAGCTGTGTACAGGAAAGGGCGGGCGTTCGGACTAA
CATACGAGGACATCTGCGGGTTCATCGAAGGGACCCTCCGGCGCCAGCCC
GGCGGGCACGATGACATCCAACGCGAGGTGTACGATGGGCACCACCGAGA
CCACGGGCTGGCATACCAAGCCGTGATGGCGCCCAACGGCATGCTCATGG
ATGCATGGGGGCCAGTGTCGGGGAGAAGACATGATTCCTACCTCTTGGGC
GTCAGCGAGTTTAACCCTCGGCTGGCGGCGGTACAGGACCCGGAGGGACC
GCAAATGAAGGTGTACGGAGACGCTCCTACCCGCTGCTTAGCCACGTGCG
CCGGGAGTTTAAGGGGGCTAATCTGA
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protein sequence of Ec-00_003800.1

>Ec-00_003800.1 ID=Ec-00_003800.1|Name=Ec-00_003800.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=242bp
MPTPYFVVRFWAPGRARFLLGLTSVNTERRSTCFVKLWTGQRSTQVRLEN
GSTFSGEEAFLLLLMRMRYPGRLSDLEKYFGREYSQLSRLFRWATDFLFE
MHSHRVMDNLAFWGPHLRSFARAVYRKGRAFGLTYEDICGFIEGTLRRQP
GGHDDIQREVYDGHHRDHGLAYQAVMAPNGMLMDAWGPVSGRRHDSYLLG
VSEFNPRLAAVQDPEGPQMKVYGDAPTRCLATCAGSLRGLI*
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mRNA from alignment at chr_00:4154379..4159311-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_003800.1 ID=Ec-00_003800.1|Name=Ec-00_003800.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=4933bp|location=Sequence derived from alignment at chr_00:4154379..4159311- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCCCACGCCGTATTTCGTTGTTAGATTCTGGGCACCTGGCCGTGCACG
CTTTCTGCTCGGGCTTACTAGTGTGAACACAGAAAGAAGAAGCACTTGCT
TCGTGAAGCTATGGACCGGACAACGTAGCACGGTGCGAGAACAGCACCGT
TTCTTGTTGGCTGTTTGTAGGCCTGTACTCCGCGTACTTATCGGGTATTG
TTTGTGTAGTGTATTTACTTCAGACGGTGAGACGACGCCCGTACCCAGGG
CGCTGTCGTGCTCAGAGAGGAGGAGTGACAGCAGGGCTGCTGCACACAAC
AAAAGGGGGTCCCGGTGCATCATCACTGACCCCTACCTAACTAAACGGTT
CTACACCATCTGCGTCACACTTGTACGTACGGCTAACATATCCAAACCAT
GTCCGTAGATCCACGAACACCCTCCCTGGTTCTTCACGCAAGTGACTAAC
CATCAGTGGGGCAAAAACACCCCGGATACATCAATAAAATGCCAATACGG
TGGTCGAGGGGAAACCCGGCGCCCGGGCGAAACCCCTCGAAAATAAACCC
CATCCAACACAAACCATTGCTATCACGGCGGATCACAACGGCCACACTTA
TCAGGAAGGCCAAGGCGAAGACAAGAATGCGAGGCAAGCCTCCTACTCCT
GCCATTGGTACACAGCCCGCGACAGTAATGCATCTTTCCCCGCATGGTAT
ACATGACCTTCCCCAAGCGCAAAAAAATCCTACAGTAACTCCGGCAAATT
CATCAGCTTTTTCCGGTGGTACCGCAGGTTGCTCTTGCTAAGAGCCTTGG
TGAGCATGTCTGCATGTTGCTCCTGCTGGAATACTCAATGTCATTCAATA
TGTTTTTTGCGAACTTCTGAGTCTGGTCTTGTCTTGGTCCTTTTTATCCC
CCCGAGCGCCGAAGTCCGATGGATCCTTAGGAATCCGGTCTTTTGCTTTC
GCGAATTGCCCCCAAAGACCCGAGAAAAGCTCCGATTTTGTCTTGCTCAG
TTTTGTCTTTGAAGGAACAATGGCGAACCAACTGCAGTACCGCAAGACAG
TTCGACAGACGTCACTGCACGCCACACCCGGTGCAATGCATGCCGGGAAC
ATGGTGCATCTGCGTCAAGTGAACCGCGCCATCCCGTTCTACATGCTCAT
GAGTGACACACCAAGCCGACGTGACGAGGATGACGCCGGGGCGGGGTGCA
GCATACATCTTAGGAGTGCGGCACAGGTGGAGGCGGAGGTGATGGAGTTG
GGGATGCTTCAAGCGGCGTGGGAGCGTGAGGAGCTGCTGCGCGTGCGCCC
TGTGGACCGTGCTCCCGTGATTTGTTTAGCGCAGACTATCGACCCCGTCG
ACGACTGCGACGCGTATCACAACTTCCGCGTGTTGAAGGAGGACATGTTC
GGCTGCTGGCGGCGCTACGTTTCCCGGAGCAAGTTAGGCTGGAGAATGGA
TCGACGTTTAGCGGAGAGGAGGCATTCCTGCTTCTTCTCATGAGGATGAG
GTGAGATGCCGTGATGACTGCTGTGTGTTCTGTTATTTCTGTTGTTGTTA
TCTGATTACTGTAGTGCGGCACTTCAAGCACACCAGCCACCAGCCCGTGT
GCTGCACGCGTGTCGCGGCTGGTGGGAATGTGGTAGCAGCAGATAGGTTA
GTTGGAGCAGCTGTGCTGACGGATAACTACGGTGGCTACGTGCTGTGCGT
GCTCATTTGTTCGGTGGTCTCCGAAAAGTGGGAGGTGATATGCTAACGGC
ATGCTCTTCGACGCATGTAAAAAGCAAGTCCACGCACATGGGTTGGGCGT
CTTCGTCTACAATCCGCGATTCCGGCGTGACGCTTTGTATCGGGATACAG
CATCGGGGCGTAATAAGCAACGTTGGGTAGGAACAGCACAACTTACAGCA
CTCACTATAGCAGAGCAGCCCGCACTCTTGTGTACCGCGACGTGCTCGTC
TAATTTGAAGTATAGTTGTCCCAGCCTCCACTATTCTCGTCTAATTTGAA
GTGTAGCTGTCCGAGCCTCCACCATTTTAAAAACATAAAAAAATGAACAT
ACATCCAGTCAACACGTCTAGCTGCTGTAGGTCTGGGTTGACACGACCGC
GATGATTCTTGTTGGTTGGGTAGGGCTTAGAAATTGCTACCGCGAGCCAC
GTCTCACGAAGTCCTCACCCCTCCTCTACCCCCTGGCGCTGTACGCAACA
AAAAAGGTACCCGGGTCGCTTGTCGGACCTCGAGAAATACTTCGGCCGCG
AGTACTCGCAGCTTAGCCGTCTCTTTCGGTGGGCCACGGATTTCCTGTTC
GAAATGCACAGCCACCGCGTGATGGACAATCTGGCGTTCTGGGGGCCACA
CCTCAGGAGCTTCGCCCGAGCTGTGTACAGGAAAGGTGGGGACACGCGAA
GACCGTGCACTTCGGCAGTATGTCTTGTCTAGGGTGCCGCGGAAACTCCA
GACTTTGGTCTCGAAACACATACTCCTGCAAGGGTGCTATTTGGTTGAAA
GATCCTGGTGTTGTGCGGATCGATGGGTAAGATTCCATTCTACACATCGT
TTTTGGTGTTTGTTGTAGATATGTAGGCTACAGGTATGCATACTGCTGCA
GCCGTTCTAAATTTTGTGTGTAAAATGCTGACCACGAACGTGTGGGTGGT
CTCGCTTAAATTGTCCTTGGTTTTTATCCGCGGTCAGCTGTTTTCTGGAT
GCATCGACCGGATACATCAAATCTTTGTCTCAGGCAATTTGCTTATAGTA
CACAGTTTCGGGCTGGGGCTCCAAATTTGCTGAGATAAGGAAACAGATTT
TGAGATAAGAAAGTTTCCTGGAAACTTCCTGCAGGCGAATATTTTCCGAT
TTAAGGCGGCTTCATGTGATTGGCTGTGGGACGACAGTCACCCAACGAAC
TCCCCCTGTTCGCAGGTACTACTGCTGTTTTCTGTGGTGCGCTGCGTGAC
AGCTGCAGCACCCCGATCACAGCGCTCCCACTGCTGTTGAGTGTGCATGC
ATGCATGCGGGTGCGTATCAATCTGTGTTGCCCCTACAACCCCAGCACAC
GAACTCGCACCAGAACAGCGACAGGAAGTACACATACTGCCCGGCAGCCC
TGCCCGGCAGCCCTGTACGAAGTGCTGTGTATCGCATTTCAAGCGTTGGG
GAGAGGGTGTTGTTCTTTGGGCGGGGGCACATCGAAGTCAAACACGCTCT
CTCAAGTAGAAGAAGCAGAGAATACTCTTGCGGCGCGTCACCAGAAGGCA
ACTGCGTGCTCTTCTTCCTCTCTGCCCTTTGCTGGCGGTGCTGCCACCTC
CTCTACGTCGTCGGTTGCCGCGGTTCGTTCCGGCGCTCTTTCTCCCCCTT
GCTTCAACCTGTGTGTGACGGGCGCGTGTTGCTGACCTAAAGCCGCACAA
CAACCAACCCCAACTTGGTTTTCTGACCTGTAGCCTCCCCCTTTTTGTGT
TGGTGGCGCGCCAACTCCAGGGCCTTTGCGCTGGGCGCTGGGTCTTATTT
GGGCGGCCGCTGGACATGTCCTTGCAGACTGTGTGTGTGCGTGTGGGTGG
TGCCTGATGATGTGTTGTGGGTGGTGCCTGATGTCTTACTTCAAAGAAAG
CTGCTAAATCGAAAAGTTGGCAAAATTTTCCACAAAACGAGCCTCCCGCC
GCTGTTAAATCTGATTATTTTTTCCGGATCTTGGGTTCTGGCGAGACTGT
CAGGAACGATCCTCAGAACGATGGCTTAACTCAAAATATATTTCCTTATT
TCAGCTTTTTTTTGGGTCCGAAATTGTCAAGTAGTTTGGATAGGGTTAGA
CAATGGAATGCTTGTTCCCCCACACCTAGTAGGGTTTCAGCACATCCCGC
AACAATCCTCCCCGATCGCGTACGGGTGGAGTCGCCGAGAAGCTGAGACA
TGTGACCGTCTTTTCAGCAGGCCGCAAAAAGCACTGTTGTTCGTACTTGC
TGACATGCTGGTGTTTGTCTGTCCTGGCTCTTTCGCGTGCAGGGCGGGCG
TTCGGACTAACATACGAGGACATCTGCGGGTTCATCGAAGGGACCCTCCG
GCGCCAGCCCGGCGGGCACGATGACATCCAACGCGAGGTGCATCTGCATG
CGGCGGCCGTAGTGCGTGTCTCGGTTCATGTCAACATTCCATTTCTCGCG
TTGCTTTGGCGACGACAACATCCACAGCCCTTTTCTCGCGATGCTTTGGC
GACGACAATACAGCAGGATTAGAAGTGATACAAATACTAACGAGTACCCG
GCGAACATGTGTGCGCAACTCAAGCTTGAATCGCTACAAGGTAAACCGTG
TGGACGAGCTTTAAGTGATGACGAGCATACGGGCTCGTTGCCAACATACG
AGCATAGGCACTTGTTCTCTCACACAACAATCCCATGTGGCGATTTAAAC
ATCAACGCCACCAGGTCAACATGTTTGTCTCGACATATTGTTGACTTCCA
GTCGAAGGTGGGAGGGGGGCGGCGGCAAAGATAACAGGGCTAACTCCCCG
AGCTGCTGCGTCGTTTCGGGTGTCTCGCACCGTGTTGTTTTGGGGTACCA
AAGAATGCAAGGGTAGGACGATGCAATAAGCATGAAGCAAATGGGCGCCT
TTCGGTCTGGTATATTTCACGACATCTCAATGTTCGTGCCGTCGCCCACG
TATGTATGCGCTGCACGCTTCTGTCATGTTAAAGGTGTACGATGGGCACC
ACCGAGACCACGGGCTGGCATACCAAGCCGTGATGGCGCCCAACGGCATG
CTCATGGATGCATGGGGGCCAGTGTCGGGGAGAAGACATGATTCCTACCT
CTTGGGCGTCAGCGAGTTTAACCCTCGGCTGGCGGCGGTACAGGACCCGG
AGGGACCGCAAATGAAGGTGTACGGAGACGCTCCTACCCGCTGCTTAGCC
ACGTGCGCCGGGAGTTTAAGGGGGCTAATCTGA
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Coding sequence (CDS) from alignment at chr_00:4154379..4159311-

>Ec-00_003800.1 ID=Ec-00_003800.1|Name=Ec-00_003800.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=726bp|location=Sequence derived from alignment at chr_00:4154379..4159311- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCCCACGCCGTATTTCGTTGTTAGATTCTGGGCACCTGGCCGTGCACG
CTTTCTGCTCGGGCTTACTAGTGTGAACACAGAAAGAAGAAGCACTTGCT
TCGTGAAGCTATGGACCGGACAACGTAGCACGCAAGTTAGGCTGGAGAAT
GGATCGACGTTTAGCGGAGAGGAGGCATTCCTGCTTCTTCTCATGAGGAT
GAGGTACCCGGGTCGCTTGTCGGACCTCGAGAAATACTTCGGCCGCGAGT
ACTCGCAGCTTAGCCGTCTCTTTCGGTGGGCCACGGATTTCCTGTTCGAA
ATGCACAGCCACCGCGTGATGGACAATCTGGCGTTCTGGGGGCCACACCT
CAGGAGCTTCGCCCGAGCTGTGTACAGGAAAGGGCGGGCGTTCGGACTAA
CATACGAGGACATCTGCGGGTTCATCGAAGGGACCCTCCGGCGCCAGCCC
GGCGGGCACGATGACATCCAACGCGAGGTGTACGATGGGCACCACCGAGA
CCACGGGCTGGCATACCAAGCCGTGATGGCGCCCAACGGCATGCTCATGG
ATGCATGGGGGCCAGTGTCGGGGAGAAGACATGATTCCTACCTCTTGGGC
GTCAGCGAGTTTAACCCTCGGCTGGCGGCGGTACAGGACCCGGAGGGACC
GCAAATGAAGGTGTACGGAGACGCTCCTACCCGCTGCTTAGCCACGTGCG
CCGGGAGTTTAAGGGGGCTAATCTGA
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Synonyms
The feature 'Ec-00_003800.1' has the following synonyms
Synonym
Esi0258_0017
Esi_0258_0017