Ec-00_003780.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_003780.1
Unique NameEc-00_003780.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length83
Homology
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BLAST of Ec-00_003780.1 vs. uniprot
Match: D8LJG9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJG9_ECTSI)

HSP 1 Score: 145 bits (366), Expect = 5.580e-44
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 1 
Query:    1 MERRAQTAKADGRPAQFTYNSMDAAAQVKFSVPALSVMTHGTDRGWPERQKIYAVLTEGHSVSVSFVPQILGT 219
            MERRAQTAKADGRPAQFTYNSMDAAAQVKFSVPALSVMTHGTDRGWPERQKIYAVLTEGHSVSVSFVPQILGT
Sbjct:    1 MERRAQTAKADGRPAQFTYNSMDAAAQVKFSVPALSVMTHGTDRGWPERQKIYAVLTEGHSVSVSFVPQILGT 73
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BLAST of Ec-00_003780.1 vs. uniprot
Match: A0A6H5JUU1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUU1_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 1.680e-11
Identity = 36/68 (52.94%), Postives = 43/68 (63.24%), Query Frame = 1 
Query:   13 AQTAKADGRPAQFTYNSMDAAAQVKFSVPALSVMTHGTDRGWPERQKIYAVLTEGHSVSVSFVPQILG 216
            A  AKADG+P  F + S+DAA     ++PA+   THG DRG+ ERQKI AV  EG  V V F PQ LG
Sbjct:  117 AMRAKADGKPLNFVFMSIDAANSTSHALPAIYPPTHGGDRGYSERQKIMAVHIEGQFVEVYFTPQYLG 184
The following BLAST results are available for this feature:
BLAST of Ec-00_003780.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LJG9_ECTSI5.580e-44100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JUU1_9PHAE1.680e-1152.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:4118946..4122754 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length249
Hectar predicted targeting categoryother localisation
Gene idEc-00_003780.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_003780Ec-00_003780Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 4118946..4123162 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003780.1.1Ec-00_003780.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 4118946..4119076 +
Ec-00_003780.1.2Ec-00_003780.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 4119384..4119472 +
Ec-00_003780.1.3Ec-00_003780.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 4122726..4122754 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003780.1CDS:Ec-00_003780.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 4118946..4119076 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003780.1Ec-00_003780.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 4118946..4122754 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_003780.1 ID=Ec-00_003780.1|Name=Ec-00_003780.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=83bp
MERRAQTAKADGRPAQFTYNSMDAAAQVKFSVPALSVMTHGTDRGWPERQ
KIYAVLTEGHSVSVSFVPQILGTESCADGKEP*
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spliced messenger RNA

>Ec-00_003780.1 ID=Ec-00_003780.1|Name=Ec-00_003780.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=249bp|location=Sequence derived from alignment at chr_00:4118946..4122754+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGAGACGCGCGCAGACAGCAAAAGCTGACGGCAGACCCGCTCAGTT
TACGTACAACAGCATGGATGCCGCCGCTCAGGTTAAGTTTTCTGTCCCTG
CCTTGTCCGTCATGACCCATGGGACCGACAGAGGCTGGCCCGAGAGACAA
AAAATTTACGCTGTCCTGACGGAGGGGCACTCTGTTAGTGTGTCGTTCGT
TCCTCAGATCCTGGGCACAGAAAGTTGTGCAGATGGAAAAGAGCCGTGA
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protein sequence of Ec-00_003780.1

>Ec-00_003780.1 ID=Ec-00_003780.1|Name=Ec-00_003780.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=83bp
MERRAQTAKADGRPAQFTYNSMDAAAQVKFSVPALSVMTHGTDRGWPERQ
KIYAVLTEGHSVSVSFVPQILGTESCADGKEP*
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mRNA from alignment at chr_00:4118946..4122754+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_003780.1 ID=Ec-00_003780.1|Name=Ec-00_003780.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=3809bp|location=Sequence derived from alignment at chr_00:4118946..4122754+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGAGAGACGCGCGCAGACAGCAAAAGCTGACGGCAGACCCGCTCAGTT
TACGTACAACAGCATGGATGCCGCCGCTCAGGTTAAGTTTTCTGTCCCTG
CCTTGTCCGTCATGACCCATGGGACCGACAGGTGAGTGAAAAGAACTGGG
CCGCTGCGCGACGTATACGTTGTAGCAGCGTTCGTTCCGCACCAACGAGA
AGAAGGCGTAAAATAGTTTGAGACGTCGGGGCGAGAAATGGACGAACAAA
GAGCCCGTCGGTCAGCACTCTTCAGTCGGCGGGCTCGACCACGGAAAATA
TTGGTCCGGCTTTCTTTTGTCGTTCACCGCCTTTTTTGATTGAGCGGCAT
ACACATTTCCAAACTCCTCCTTAGTCACGGCTAACCTATTGCGCCATATG
GGCACCCCTCGTGCGCGCTGTTTCTGTCGTTTGTACAGAGGCTGGCCCGA
GAGACAAAAAATTTACGCTGTCCTGACGGAGGGGCACTCTGTTAGTGTGT
CGTTCGTTCCTCAGATCCTGGGCACAGGTGGGCTGGATAGATAGACGGTA
TCTTCCTCGCATTTTCCTCTTGTCGATGTGCTACTTTGCGCTGCTATGTC
GATGTAACTACATACATGGTCTCACTTCTTTCCCCGGCAGTCCACAAAAA
CGAAGTATTTATTTCCTGCGCTAACGAATCGGCATGTATCATGTTATATA
TATACTTACAGGATGGTCGTCGTGACGTGACACATTTCTTGTTATTAGTA
TGGAAAAAAAAAAAAAAATGGCTGTGATAATTTTTTTCGTACAGCGGTAT
GGACCAGACGCCGACTGTACATAGAAGTTGGCGAGTGTCGACTGAGTTGT
GTTGTGACGGCATCTTCCACGCACTTCTGCCAGCGCTGCTTTGTTGTTTG
GAGTCTTGTAGGTCGAGATACAGCAGTGGGATTCTCGAGTTGTGGAGGCA
AAAGTATGCCTGCAGCCACAGCAAAAAATTGCATGCATAGCTCGACTACC
GTGCTGCTATGTTTTTACTACAGACCAACTGGATGGGATACTTCCTGCCA
CGGCTAACCATACTACAACGCGATGTAAACATCCGTTCTTGTGTCGTGCG
GCTGCTTCGTGTATCGACGACAGATACACACGCAGGGCTCTCGCGACGTT
GTCGTTATTGCGCGGGAGGACCCCCCCGAGATCTTCCACATATATGGTGC
TCCGACGACGGCAGTACAACTGTGCATAGATGTTGTAGGAGAGTGGAGTT
GTGCTGTCACGGCATCTTTCCCGCACTCTCCTACCGGTGCTTGCGTCATG
CAGTCTTCTACGCCGGAAGACGAGAGTGGTTTGGGTTCCCGTGTTGGTTG
TGCAGCAAACGTGCCTGCAACAACAGAGGATACGGTGTTCTATTTATTAT
TATCCCGCTCACCTTTTTTTTTTTTTTTTGCGACATGATGCAAATTTTGT
TTTTCTGAATATGACACAACGAATCCATCTCTGTCATAGGTAAGAGTCAG
AGTCAGATTAGCAATGAATTCATAGCGTCAGAAAAAGCTACCTGTATGTC
TACGATTTCCCAGACAGCATATAGGGACATGTATGTCCCCTGTGGCATTT
TTCCATTGTCCTTTGGCACTGCCAAGAAGACCGCCGTATCTTTACGCAGT
CCAACTTTTGCTTTTATAATTTACATCGAACGACGGGGGACGGGTCGCGA
CCTTCATCATGCCCACCTGCGACTATCGTATCGACGAGACGCCGACTGAT
CATGGTCGTAAGAGTGTGGAGTTAGCTGTGTTGTGACGGTATTTTCTACG
CCCTACCCCGTCCGATACATACAGCGGCGACTATGCAAGCAAGTGTCCGT
GCAACAACGACAAAAAAAAAACGCGTCCATGCATGTGTATGTAGATAAGG
GTGTGTCTTATCAGGCCGCAAAAATACGTAACTTTTTTCACCGAATAGTA
ACTTTTTTCACGGAACCGTAACTAGGGTTTCCAGTGGTTCTTATCGGCAG
AAGGCGCGAAGGCGCGCATTTTTTCAAAAATTACGGAAAGCGCCACGGCT
CGACGTACATACACCGGTCCCGACCAGGCGAGAGACCCGAGGACTCCCAC
AACAGACGTGATACACCCACACCATGAACAACAACGCCGTAGCAGTGGCA
GACCGGCCATCAAGAACGAAAACGGTGCCTCTGCGACTGCAGGGTGGAGG
TGAAAGTGGTGCAGCTGCTGGGCATGGTGTTGCCCAGATCACGGTGAAGG
AAATGTTTGGCGACGAATAACACCCATATGCACTCCCGGAAAAGTGTTAC
CGTGCAATCGTCGAATTTTATGCATGCGTGACGGGGGCGGGGGCGGGTAG
TTTCATTTTTATCGTTGGGCATGATTGAGTCAACGACTTCGTCTTTTCGT
AGCATCATTTTTTTTAGGATACGCGCGCCTCCGCAGAGACGTGTGGGTTG
TTTGGTTGGCAACAACACTTTGAGAGGATGCCTTGAGGCAACAAAGGAGT
ATCAAGGATAATATGGTTGAAGAACGCCGAAGACATCGCTGTCTTGCGGG
TAACCTGCCGTGCCGCCAATCTGCGGACATGCATATCGTTTGGTGTTTTC
CTATTTGCAAGACTTGTTCTTGCAACCCAATACTACGTTGGGTGTTGGCG
GGAACTCTGAGGCACGCTTTGGTTCCGCAATTTTGGAGCCTTGCAATTTT
TCCCGTCTCCGCGCATGCTCACTTGAAGCGCAGGAATGTGTTCGCGATGG
GATTCGACAAGACCCCAATTTTTAGCGTGTGTGTGGGTCTCCTTCAGGTC
TGCAACCTGGAGCAATGTTTCACCCACGCGACGAATATTTAATACAGGGA
TGCAGAGACATCATTAAAAGTTGTATCAACGACAACAACGTTTTCGATTC
ACACCCTCCTATCAATTAGGAAAAAAAGTCGAACATGCCCACACTTTTAA
TGCCCTAGGCAAAACAAGCACCCTCCAAGACCCACAGGACCCCGCTTTCA
TCCGCACACGATGCATGTTAACCATAAAGTGTTGCCGGCACGAACACACA
CATTACGAACCAAGTGTAGTGTGACACATCTGGTCAGAACGCTCCACACC
GACACCCACAAAACATGTCAGCGAGAATCAACATGTCACACATCACACAC
CCCACCTCTCCCCGGGATGCGCCGACACCCTACCACCAACACCCAAAACA
TGTTCTTCCAGCGCCCTCCGCCCTCTACACTGAGGTACCTCCCTCCCGCG
CCTCTCCCTCCCGCGCCGCTATCCTCCCTTTCACGCGTCTCGTCATACCG
TGGAAGCTAGCGTACTTCTGCCGCCATCCGCTCATGTGGCCCCTAACCGC
AACCCGCCCATTTAGTGTACCCGCCACGGGAAGAATCGCATCCCCGCGCG
CCCCACCCCCACCCCCCTTGCCCCCCGCCGCGCCTCTCGCCCGCTTGTAG
TAGCGACAAAACCCCCATCCGCCCCCATCCGCCCCTATGTAGACCCGTCC
CCACTTCCCGCTTGTGCGCGCGCGACGCGATGCCGCCGGGCTGGATACGT
GCTCACGAATTCCTCTGGCGGTTGTAGTCCGGCCTCCACTGCTTCTTCAA
CTCCAGGGCCGTGCGGATAGCTGCTCGGGCCGGGGTCTCACCGCTCCTCG
AAGGAGCCGGCTGCTCCGTTTGCCAGTCATCCGGCAAGGTGCGCTGCGTA
GCACAGAGGGCCGGCCGGTTGCGTCCGCTGCGCGAGTCCTCCTCTGCAAG
CTGGATCGGCGATACCTTCTCGTCTTGCAGAAAGTTGTGCAGATGGAAAA
GAGCCGTGA
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Coding sequence (CDS) from alignment at chr_00:4118946..4122754+

>Ec-00_003780.1 ID=Ec-00_003780.1|Name=Ec-00_003780.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=249bp|location=Sequence derived from alignment at chr_00:4118946..4122754+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGAGAGACGCGCGCAGACAGCAAAAGCTGACGGCAGACCCGCTCAGTT
TACGTACAACAGCATGGATGCCGCCGCTCAGGTTAAGTTTTCTGTCCCTG
CCTTGTCCGTCATGACCCATGGGACCGACAGAGGCTGGCCCGAGAGACAA
AAAATTTACGCTGTCCTGACGGAGGGGCACTCTGTTAGTGTGTCGTTCGT
TCCTCAGATCCTGGGCACAGAAAGTTGTGCAGATGGAAAAGAGCCGTGA
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Synonyms
The feature 'Ec-00_003780.1' has the following synonyms
Synonym
Esi0258_0010
Esi_0258_0010