Ec-00_003750.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ec-00_003750.1
Unique Name	Ec-00_003750.1
Type	mRNA
Organism	Ectocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length	125

Homology

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BLAST of Ec-00_003750.1 vs. uniprot
Match: D7G5N3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5N3_ECTSI)

HSP 1 Score: 251 bits (642), Expect = 1.050e-84
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 1

Query:    1 MLLVFRQVLQSSWSMVKYFKQDLVKTLESNWGNQTGAWEALLKLVQSASALSFAVRAPSHNDEELQQLHKHAQDMVHVAKEVIGKDGVRPSMHSTLHYSEAVKNHDPMASSSFCWRVRTHAQRL 372
            MLLVFRQVLQSSWSMVKYFKQDLVKTLESNWGNQTGAWEALLKLVQSASALSFAVRAPSHNDEELQQLHKHAQDMVHVAKEVIGKDGVRPSMHSTLHYSEAVKNHDPMASSSFCWRVRTHAQRL
Sbjct:    1 MLLVFRQVLQSSWSMVKYFKQDLVKTLESNWGNQTGAWEALLKLVQSASALSFAVRAPSHNDEELQQLHKHAQDMVHVAKEVIGKDGVRPSMHSTLHYSEAVKNHDPMASSSFCWRVRTHAQRL 124

[Close]

BLAST of Ec-00_003750.1 vs. uniprot
Match: D7G0R9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0R9_ECTSI)

HSP 1 Score: 227 bits (578), Expect = 1.810e-74
Identity = 113/114 (99.12%), Postives = 113/114 (99.12%), Query Frame = 1

Query:    1 MLLVFRQVLQSSWSMVKYFKQDLVKTLESNWGNQTGAWEALLKLVQSASALSFAVRAPSHNDEELQQLHKHAQDMVHVAKEVIGKDGVRPSMHSTLHYSEAVKNHDPMASSSFC 342
            MLLVFRQVLQSSWSMVKYFKQDLVKTLESNWGNQTGAWE LLKLVQSASALSFAVRAPSHNDEELQQLHKHAQDMVHVAKEVIGKDGVRPSMHSTLHYSEAVKNHDPMASSSFC
Sbjct:   44 MLLVFRQVLQSSWSMVKYFKQDLVKTLESNWGNQTGAWEDLLKLVQSASALSFAVRAPSHNDEELQQLHKHAQDMVHVAKEVIGKDGVRPSMHSTLHYSEAVKNHDPMASSSFC 157

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BLAST of Ec-00_003750.1 vs. uniprot
Match: D7FI42_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI42_ECTSI)

HSP 1 Score: 95.1 bits (235), Expect = 1.720e-23
Identity = 46/62 (74.19%), Postives = 50/62 (80.65%), Query Frame = 1

Query:   43 MVKYFKQDLVKTLESNWGNQTGAWEALLKLVQSASALSFAVRAPSHNDEELQQLHKHAQDMV 228
            M K+FKQD +KTL S W  Q  AWE +L LVQSASALSFAVRAPSHNDEEL+QLH HA DMV
Sbjct:    1 MAKHFKQDFMKTLVSEWRGQNAAWEGMLTLVQSASALSFAVRAPSHNDEELKQLHTHALDMV 62

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BLAST of Ec-00_003750.1 vs. uniprot
Match: D8LH37_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH37_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 2.570e-19
Identity = 52/105 (49.52%), Postives = 65/105 (61.90%), Query Frame = 1

Query:    1 MLLVFRQVLQSSWSMVKYFKQDLVKTLESNWGNQTGAWEALLKLVQSASALSFAVRAPSHNDEELQQLHKHAQDMVHVAKEVIGKDGVRPSMHSTLHYSEAVKNH 315
            MLLVFR VL     M K  K+  V  L   WG      E L +LVQ AS LS+AVRAPSHND EL QL   A+D+V    +V+G+ G RP++HS LH +EA++ H
Sbjct:   38 MLLVFRPVLV----MKKNMKRQDVNDLREMWGTDGKVLEVLQQLVQVASHLSYAVRAPSHNDRELSQLDLLARDVVGFYSKVMGRTGSRPTIHSILHTTEAIRAH 138

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BLAST of Ec-00_003750.1 vs. uniprot
Match: A0A6H5J9E1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9E1_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 4.800e-19
Identity = 55/113 (48.67%), Postives = 71/113 (62.83%), Query Frame = 1

Query:    1 MLLVFRQVLQSSWSMVKYFKQDLVKTLESNWGNQTGAWEALLKLVQSASALSFAVRAPSHNDEELQQLHKHAQDMVHVAKEVIGKDGVRPSMHSTLHYSEAVKNHD--PMASS 333
            MLLVFR VL +  +M K  K+  +  L   WG      E L KL++ AS LS AVRAPSHND EL QL   A+D+V V  +V+G+ G RP++HS LH S+A++ H   P ASS
Sbjct:  595 MLLVFRPVLANVGAMKKNMKRQDIAELRDVWGTDEKVLEVLQKLIEVASHLSCAVRAPSHNDLELAQLDLLARDVVGVYSKVLGRTGSRPTIHSVLHTSQAIRAHGIVPDASS 707

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BLAST of Ec-00_003750.1 vs. uniprot
Match: A0A6H5JWQ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWQ6_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 1.680e-16
Identity = 47/118 (39.83%), Postives = 74/118 (62.71%), Query Frame = 1

Query:    1 MLLVFRQVLQSSWSMVKYFKQDLVKTLESNWGNQTGAWEALLKLVQSASALSFAVRAPSHNDEELQQLHKHAQDMVHVAKEVIGKDGVRPSMHSTLHYSEAVKNH-DPMASSSFCWRV 351
            +LLV R VL  + ++ +Y K   ++ L+  WG +      L KL+Q ASAL+FAVR+PS    E ++L +HA+D V V  E++G+ GVR ++HS LHY +A++ H + + + S C  V
Sbjct:  444 LLLVSRCVLHDATALKEYVKPRELQALKDTWGGEQAVLAQLRKLLQVASALTFAVRSPSFYKAERKKLMEHARDTVGVYAELLGRGGVRTTVHSALHYVQAIEEHVETVKAGSGCSAV 561

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BLAST of Ec-00_003750.1 vs. uniprot
Match: A0A6H5J9J8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9J8_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 2.100e-14
Identity = 38/89 (42.70%), Postives = 59/89 (66.29%), Query Frame = 1

Query:   49 KYFKQDLVKTLESNWGNQTGAWEALLKLVQSASALSFAVRAPSHNDEELQQLHKHAQDMVHVAKEVIGKDGVRPSMHSTLHYSEAVKNH 315
            +Y K   ++ L+  WG +      L KL+Q ASAL+FAVR+PS +  E ++L +HA+D V V  E++G+ GVR ++HS LHY +A ++H
Sbjct:   34 EYVKPRELQALKDTWGGEQAVLAQLRKLLQVASALTFAVRSPSFDKAERKKLMEHARDTVGVYAELLGRGGVRTTVHSALHYVQAYEDH 122

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BLAST of Ec-00_003750.1 vs. uniprot
Match: D7G6M3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6M3_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 6.810e-14
Identity = 39/75 (52.00%), Postives = 56/75 (74.67%), Query Frame = 1

Query:    4 LLVFRQVLQSSWSMVKYFKQDLVKTLESNWGNQTGAWEALLKLVQSASALSFAVRAPSHNDEELQQLHKHAQDMV 228
            LLVFR V  ++ +M  Y K   +  L  ++G+   A ++LL+LVQ+AS+LSFA+RAPS+ND E++QLHKHAQDM+
Sbjct:  224 LLVFRAVFHTTATMEMYIKGRELGELVDDYGSMQEARDSLLQLVQAASSLSFALRAPSYNDVEIEQLHKHAQDMI 298

[Close]

BLAST of Ec-00_003750.1 vs. uniprot
Match: A0A6H5K6Y9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6Y9_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 1.620e-13
Identity = 37/92 (40.22%), Postives = 60/92 (65.22%), Query Frame = 1

Query:   40 SMVKYFKQDLVKTLESNWGNQTGAWEALLKLVQSASALSFAVRAPSHNDEELQQLHKHAQDMVHVAKEVIGKDGVRPSMHSTLHYSEAVKNH 315
            S+ +Y K   ++ L+  WG +      L KL+Q ASAL+FAVR+PS +  E ++L +HA+D V +  E++G+  VR ++HS LHY +A++ H
Sbjct:  209 SIKEYVKPRELQALKDTWGGEQAVLAQLRKLLQVASALTFAVRSPSFDKAERKKLMEHARDTVGLYAELLGRGDVRTTVHSALHYVQAIEGH 300

[Close]

BLAST of Ec-00_003750.1 vs. uniprot
Match: A0A6H5K575_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K575_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 1.890e-12
Identity = 37/92 (40.22%), Postives = 59/92 (64.13%), Query Frame = 1

Query:   40 SMVKYFKQDLVKTLESNWGNQTGAWEALLKLVQSASALSFAVRAPSHNDEELQQLHKHAQDMVHVAKEVIGKDGVRPSMHSTLHYSEAVKNH 315
            S+ +Y K   ++ L+  WG +      L KL+Q A AL+FAV +PS +  E ++L +HA+D V V  E++G+ GVR ++HS LHY  A+++H
Sbjct:  681 SIKEYVKPRELQALKDTWGGEQAVLAQLRKLLQVAYALTFAVCSPSFDKAERKKLMEHARDTVGVHAELLGRGGVRATVHSALHYVPAIEDH 772

The following BLAST results are available for this feature:

BLAST of Ec-00_003750.1 vs. uniprot

BLAST of Ec-00_003750.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13


Match Name	E-value	Identity	Description
D7G5N3_ECTSI	1.050e-84	100.00	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
D7G0R9_ECTSI	1.810e-74	99.12	Uncharacterized protein n=2 Tax=Ectocarpus silicul...	[more]
D7FI42_ECTSI	1.720e-23	74.19	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
D8LH37_ECTSI	2.570e-19	49.52	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5J9E1_9PHAE	4.800e-19	48.67	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JWQ6_9PHAE	1.680e-16	39.83	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5J9J8_9PHAE	2.100e-14	42.70	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7G6M3_ECTSI	6.810e-14	52.00	Uncharacterized protein n=2 Tax=Ectocarpus silicul...	[more]
A0A6H5K6Y9_9PHAE	1.620e-13	40.22	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K575_9PHAE	1.890e-12	40.22	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr_00	contig	chr_00:4075493..4076623 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR	2016-10-08

Properties


Property Name	Value
Length	375
Hectar predicted targeting category	other localisation
Gene id	Ec-00_003750.1

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ec-00_003750	Ec-00_003750	Ectocarpus species7 Ec32 male_plus_femaleSDR	gene	chr_00 4075493..4076623 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_003750.1.4	Ec-00_003750.1.4	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 4075493..4075551 -
Ec-00_003750.1.3	Ec-00_003750.1.3	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 4075696..4075786 -
Ec-00_003750.1.2	Ec-00_003750.1.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 4076080..4076259 -
Ec-00_003750.1.1	Ec-00_003750.1.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 4076579..4076623 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_003750.1	CDS:Ec-00_003750.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	CDS	chr_00 4075493..4075551 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_003750.1	Ec-00_003750.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	polypeptide	chr_00 4075493..4076623 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at chr_00:4075493..4076623-
coding sequence from alignment at chr_00:4075493..4076623-

mRNA sequence

>Ec-00_003750.1 ID=Ec-00_003750.1|Name=Ec-00_003750.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=125bp
MLLVFRQVLQSSWSMVKYFKQDLVKTLESNWGNQTGAWEALLKLVQSASA
LSFAVRAPSHNDEELQQLHKHAQDMVHVAKEVIGKDGVRPSMHSTLHYSE
AVKNHDPMASSSFCWRVRTHAQRL*

spliced messenger RNA

>Ec-00_003750.1 ID=Ec-00_003750.1|Name=Ec-00_003750.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=375bp|location=Sequence derived from alignment at chr_00:4075493..4076623- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTACTCGTCTTCCGACAGGTGCTTCAAAGCTCGTGGTCCATGGTGAA
ATACTTCAAGCAGGACTTAGTCAAGACTCTGGAATCAAATTGGGGAAATC
AGACGGGTGCGTGGGAGGCTTTACTCAAGCTCGTGCAATCCGCATCTGCC
TTGTCGTTTGCGGTGCGAGCACCCTCCCACAACGACGAGGAACTGCAACA
GCTCCACAAGCATGCGCAAGACATGGTGCATGTGGCGAAGGAAGTTATCG
GGAAGGACGGCGTGAGGCCTTCAATGCACAGTACCCTACACTATTCGGAA
GCCGTGAAGAACCACGACCCAATGGCCTCCTCCTCCTTTTGCTGGCGCGT
CAGGACACATGCCCAACGCCTCTAG

protein sequence of Ec-00_003750.1

>Ec-00_003750.1 ID=Ec-00_003750.1|Name=Ec-00_003750.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=125bp
MLLVFRQVLQSSWSMVKYFKQDLVKTLESNWGNQTGAWEALLKLVQSASA
LSFAVRAPSHNDEELQQLHKHAQDMVHVAKEVIGKDGVRPSMHSTLHYSE
AVKNHDPMASSSFCWRVRTHAQRL*

mRNA from alignment at chr_00:4075493..4076623-

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ec-00_003750.1 ID=Ec-00_003750.1|Name=Ec-00_003750.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1131bp|location=Sequence derived from alignment at chr_00:4075493..4076623- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCTACTCGTCTTCCGACAGGTGCTTCAAAGCTCGTGGTCCATGGTGAG
AGACTGGCCGTGTGTGCAGAAGACCTGAGATGATGAAAGCTGTACAGAAG
ACCTTATATGATGAAGGCAAAACCCGTGCGATGTGGTCGCCCTTTTACAT
TGCAATCCCGGCCTATACTTTAAAAACAGACAAGTCTGCTACGCCACCGC
GGAAGCTCTTGTATTCCACGTAAAAAGATGGATCGAAATCAGTCTCATCT
CCCTTTCTCTACTCGCTCTCCCTCTCTCTCTCTCTCTGTCTCTGTCTGTC
TGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTG
CCCGTCCGCAACAGGTGAAATACTTCAAGCAGGACTTAGTCAAGACTCTG
GAATCAAATTGGGGAAATCAGACGGGTGCGTGGGAGGCTTTACTCAAGCT
CGTGCAATCCGCATCTGCCTTGTCGTTTGCGGTGCGAGCACCCTCCCACA
ACGACGAGGAACTGCAACAGCTCCACAAGCATGCGCAAGACATGGTGAGA
CAAGACGACGTTCCAACATGGAAATGGTCCGTATTAGTGGGTCAAGTCTC
GCCATGCCCTCGTCGAAATAGGACTGTATTTTTTCGTAATTTAAACATCT
CACAAAAACTATTTTGCTGCCCAATGTGCCCACCCATACTTAATAGTATG
CGCAACTCGAAGACCCCCCTCCTCGAGGTTTCACATTGTATCGAATGGCG
CACAGTGTGGCACCTTTATATTGAGCATGACGCCCCCCCCCATATTCCGA
TGTGTTGTACGGATAATACTTGCATACATATGTATAGGTGCATGTGGCGA
AGGAAGTTATCGGGAAGGACGGCGTGAGGCCTTCAATGCACAGTACCCTA
CACTATTCGGAAGCCGTGAAGAACCACGGTGAGTTTGTGGGATGTTCTCT
GTTGCCGCGAGGCGAAAACTTAGCCTATGTGCAACTATTCTATGCGAACA
TCCCTCGAAATGACACTCCGCACCTCTTGCACGTTTGACCCGGCCGCGTC
AACAACTGCATTCAATTTCTAGACCCAATGGCCTCCTCCTCCTTTTGCTG
GCGCGTCAGGACACATGCCCAACGCCTCTAG

Coding sequence (CDS) from alignment at chr_00:4075493..4076623-

>Ec-00_003750.1 ID=Ec-00_003750.1|Name=Ec-00_003750.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=375bp|location=Sequence derived from alignment at chr_00:4075493..4076623- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCTACTCGTCTTCCGACAGGTGCTTCAAAGCTCGTGGTCCATGGTGAA
ATACTTCAAGCAGGACTTAGTCAAGACTCTGGAATCAAATTGGGGAAATC
AGACGGGTGCGTGGGAGGCTTTACTCAAGCTCGTGCAATCCGCATCTGCC
TTGTCGTTTGCGGTGCGAGCACCCTCCCACAACGACGAGGAACTGCAACA
GCTCCACAAGCATGCGCAAGACATGGTGCATGTGGCGAAGGAAGTTATCG
GGAAGGACGGCGTGAGGCCTTCAATGCACAGTACCCTACACTATTCGGAA
GCCGTGAAGAACCACGACCCAATGGCCTCCTCCTCCTTTTGCTGGCGCGT
CAGGACACATGCCCAACGCCTCTAG

Synonyms

The feature 'Ec-00_003750.1' has the following synonyms


Synonym
Esi0258_0001
Esi_0258_0001