Ec-00_003710.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_003710.1
Unique NameEc-00_003710.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length66
Homology
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BLAST of Ec-00_003710.1 vs. uniprot
Match: D7FSJ9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSJ9_ECTSI)

HSP 1 Score: 141 bits (355), Expect = 9.040e-43
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 1 
Query:    1 MGAAYSLVGVSYHIAHGGSRKNHFVTQLRVRGRWHKYDCLAGGAITSSDTFDADWNSSSQYAGVP 195
            MGAAYSLVGVSYHIAHGGSRKNHFVTQLRVRGRWHKYDCLAGGAITSSDTFDADWNSSSQYAGVP
Sbjct:    1 MGAAYSLVGVSYHIAHGGSRKNHFVTQLRVRGRWHKYDCLAGGAITSSDTFDADWNSSSQYAGVP 65
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BLAST of Ec-00_003710.1 vs. uniprot
Match: D7G7U5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7U5_ECTSI)

HSP 1 Score: 128 bits (321), Expect = 2.430e-36
Identity = 58/60 (96.67%), Postives = 60/60 (100.00%), Query Frame = 1 
Query:    1 MGAAYSLVGVSYHIAHGGSRKNHFVTQLRVRGRWHKYDCLAGGAITSSDTFDADWNSSSQ 180
            MGAAYSLVGVSYHIAHGGSRKNHFVTQLRVRGRWHKYDCLAGGA+TS+DTFDADWNSSSQ
Sbjct:    1 MGAAYSLVGVSYHIAHGGSRKNHFVTQLRVRGRWHKYDCLAGGAVTSTDTFDADWNSSSQ 60
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BLAST of Ec-00_003710.1 vs. uniprot
Match: A0A6H5KDI5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDI5_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 1.180e-15
Identity = 35/62 (56.45%), Postives = 45/62 (72.58%), Query Frame = 1 
Query:    1 MGAAYSLVGVSYHIAHGGS-RKNHFVTQLRVRGRWHKYDCLAGGAITSSDTFDADWNSSSQY 183
            MG  YSLVG+S  +A GG   +NHFV+Q+ +RGRWHK DCL GG +TSSD F + W+ SS +
Sbjct:  102 MGVTYSLVGISCFLALGGGPNRNHFVSQVWIRGRWHKDDCLQGGIVTSSDAFGSGWHVSSVH 163
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BLAST of Ec-00_003710.1 vs. uniprot
Match: D7G2I1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2I1_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 4.100e-9
Identity = 29/30 (96.67%), Postives = 29/30 (96.67%), Query Frame = 3 
Query:   93 RKMAQVRLPGGRSHNFFRHVRCRLEQLVAV 182
            RKMAQVRLPGGRS NFFRHVRCRLEQLVAV
Sbjct:  432 RKMAQVRLPGGRSGNFFRHVRCRLEQLVAV 461
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BLAST of Ec-00_003710.1 vs. uniprot
Match: A0A6H5KPV6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPV6_9PHAE)

HSP 1 Score: 50.8 bits (120), Expect = 1.080e-5
Identity = 19/30 (63.33%), Postives = 24/30 (80.00%), Query Frame = 1 
Query:   94 GRWHKYDCLAGGAITSSDTFDADWNSSSQY 183
            GRWHKYDCL GG +TSSD +D+ W+ SS +
Sbjct:  576 GRWHKYDCLQGGIVTSSDAYDSGWHVSSVH 605
The following BLAST results are available for this feature:
BLAST of Ec-00_003710.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FSJ9_ECTSI9.040e-43100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G7U5_ECTSI2.430e-3696.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KDI5_9PHAE1.180e-1556.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2I1_ECTSI4.100e-996.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KPV6_9PHAE1.080e-563.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:3985164..3985361 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length198
Hectar predicted targeting categoryother localisation
Gene idEc-00_003710.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_003710Ec-00_003710Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 3984633..3985384 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003710.1.1Ec-00_003710.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3985164..3985361 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003710.1CDS:Ec-00_003710.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 3985164..3985361 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003710.1Ec-00_003710.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 3985164..3985361 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_003710.1 ID=Ec-00_003710.1|Name=Ec-00_003710.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=66bp
MGAAYSLVGVSYHIAHGGSRKNHFVTQLRVRGRWHKYDCLAGGAITSSDT
FDADWNSSSQYAGVP*
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spliced messenger RNA

>Ec-00_003710.1 ID=Ec-00_003710.1|Name=Ec-00_003710.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=198bp|location=Sequence derived from alignment at chr_00:3985164..3985361- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGGCGGCATATTCCTTGGTCGGCGTATCTTACCATATTGCGCATGG
TGGGTCACGGAAGAACCACTTCGTTACTCAACTGCGTGTCAGAGGAAGAT
GGCACAAGTACGACTGCCTGGCGGGAGGAGCCATAACTTCTTCAGACACG
TTCGATGCCGACTGGAACAGCTCGTCGCAGTATGCTGGCGTACCTTAA
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protein sequence of Ec-00_003710.1

>Ec-00_003710.1 ID=Ec-00_003710.1|Name=Ec-00_003710.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=66bp
MGAAYSLVGVSYHIAHGGSRKNHFVTQLRVRGRWHKYDCLAGGAITSSDT
FDADWNSSSQYAGVP*
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mRNA from alignment at chr_00:3985164..3985361-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_003710.1 ID=Ec-00_003710.1|Name=Ec-00_003710.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=198bp|location=Sequence derived from alignment at chr_00:3985164..3985361- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGGGGCGGCATATTCCTTGGTCGGCGTATCTTACCATATTGCGCATGG
TGGGTCACGGAAGAACCACTTCGTTACTCAACTGCGTGTCAGAGGAAGAT
GGCACAAGTACGACTGCCTGGCGGGAGGAGCCATAACTTCTTCAGACACG
TTCGATGCCGACTGGAACAGCTCGTCGCAGTATGCTGGCGTACCTTAA
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Coding sequence (CDS) from alignment at chr_00:3985164..3985361-

>Ec-00_003710.1 ID=Ec-00_003710.1|Name=Ec-00_003710.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=198bp|location=Sequence derived from alignment at chr_00:3985164..3985361- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGGGGCGGCATATTCCTTGGTCGGCGTATCTTACCATATTGCGCATGG
TGGGTCACGGAAGAACCACTTCGTTACTCAACTGCGTGTCAGAGGAAGAT
GGCACAAGTACGACTGCCTGGCGGGAGGAGCCATAACTTCTTCAGACACG
TTCGATGCCGACTGGAACAGCTCGTCGCAGTATGCTGGCGTACCTTAA
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Synonyms
The feature 'Ec-00_003710.1' has the following synonyms
Synonym
Esi0235_0034
Esi_0235_0034