Ec-00_003700.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_003700.1
Unique NameEc-00_003700.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length297
Homology
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BLAST of Ec-00_003700.1 vs. uniprot
Match: D7FSJ8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSJ8_ECTSI)

HSP 1 Score: 87.8 bits (216), Expect = 6.420e-18
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 2 
Query: 1598 MAPTTRGKRTPSAKAKAAFATASTGATPTKNTTSPKNGKGKVHHPH 1735
            MAPTTRGKRTPSAKAKAAFATASTGATPTKNTTSPKNGKGKVHHPH
Sbjct:    1 MAPTTRGKRTPSAKAKAAFATASTGATPTKNTTSPKNGKGKVHHPH 46
The following BLAST results are available for this feature:
BLAST of Ec-00_003700.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FSJ8_ECTSI6.420e-18100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:3979654..3981956 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score63.5
Seed ortholog evalue1.9e-07
Seed eggNOG ortholog27923.ML132017a-PA
Length1746
KEGG koko:K15255
Hectar predicted targeting categoryother localisation
Gene idEc-00_003700.1
EggNOG free text desc.DNA helicase activity
EggNOG OGs38G2J@33154,3BIV7@33208,COG0507@1,KOG0987@2759
EC3.6.4.12
COG Functional cat.D
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03029,ko03032
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_003700Ec-00_003700Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 3979654..3981956 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003700.1Ec-00_003700.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 3979655..3981102 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003700.1.3Ec-00_003700.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3979654..3979753 -
Ec-00_003700.1.2Ec-00_003700.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3980086..3980212 -
Ec-00_003700.1.1Ec-00_003700.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3980438..3981956 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0037003UTR:Ec-00_003700.1Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_00 3979654..3979654 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003700.1CDS:Ec-00_003700.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 3979655..3979753 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0037005UTR:Ec-00_003700.1Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_00 3981103..3981956 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_003700.1 ID=Ec-00_003700.1|Name=Ec-00_003700.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=297bp
MTDPRDRGNNRRRDDTSTRNRRYRVVNATDINTRRGAQRAASADALNAHR
RAQYSASAEAINSRRTTRHADRAQQLNAARRRRRATVINNKRGLPFNDIF
HAEDDSISLRAIVGDRQRALEETRRDQGITAQTGDPCRHCGGKLFAKESK
GICCKNGKYILPRLPPLPPSLKESYDSPEPSAQRFRKESRMYNCRCNFAS
LNVEDGELKKKFGDHLLSVQGSDILPDVPPTTLPDTPTSSPTPVHDIDMA
PTTRGKRTPSAKAKAAFATASTGATPTKNTTSPKNGKGKVHHPHVST
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spliced messenger RNA

>Ec-00_003700.1 ID=Ec-00_003700.1|Name=Ec-00_003700.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1746bp|location=Sequence derived from alignment at chr_00:3979654..3981956- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
CCCCGGAGACGCAGGAAAGGATAAAATGAATGGCAACATGTACCACTTCG
TGACGTCACATAGATAGGATGACAAAAGAAAAGTTGGAAAAGAAGAATAC
GGTAACCTGTAGTCTATTTCACATTAAATTTGTTAGTACACGCCGGACTT
CTTCCACACATCTGGGTTCGAATCCAAACACCAAACTGGAATACCCTAAT
ATTATCGATCGCCCTCGACAATTTGGGACGTTTGCCACCAGTTCGTCGTC
CTCCGGCGTCCGACCCATTGAATATACCTCCTGGAGTGAGTACGCGAACA
ACTCATCACAACACTACACCGTAGTTCTCCACCAGAAGACCCAAAAACGT
GTCGCAGGCGCTGCCAATTGAAATGGCTTTCTTCTTTGATGTACCCGCGA
AGATTTGCATCTTTTTGGGGACGGCTGCAGTGGTTATTCAATCAACTGCC
ATCACACTAGACATGCCGTGAGGATGATGCGTACTGCGGAACTACAGGAA
AGACCGAGTACGTGTTGGAGTCCATGCCAACTGCAAAGGGCAACAAAAAC
GATGATCGTGCGCCTGAGTGTCCCAAACATGTAATACTATCAGGTTGAAA
CAGCCGGACGCCAAGTGTGGAAAAAGGCTCGTATGACCCGACTTTCGGTG
CACATCAGCATCAACTGATGAAGTAAGCAGTATGACACCGACACAGCAAT
CGGGAAAAATTGAATATTTTTATTGGGCCTTCCTAAAGATTCCGAAAGAC
GACACGCACGTCGTTCACACGTCCAGCCCCACCAATAGGTTTCTAGCGCT
CAACCCTACCACACAGCAACCCAGTGCTTTACCACGCACTGTACACCCCA
ACTCATGACCGATCCAAGAGATCGCGGCAACAACCGCCGTCGAGACGACA
CAAGCACAAGGAACCGCCGGTACCGAGTTGTCAACGCCACCGACATAAAC
ACGCGTCGAGGGGCTCAGCGTGCTGCCTCCGCCGATGCCCTCAACGCCCA
TCGTAGAGCACAATACTCCGCGTCGGCAGAGGCCATCAACAGCCGTCGTA
CAACTCGCCATGCCGACAGAGCACAACAGCTCAACGCCGCACGTCGACGG
CGTAGAGCGACCGTCATCAACAACAAAAGGGGGTTGCCCTTCAACGACAT
CTTTCACGCCGAGGACGACTCCATCTCACTACGAGCCATTGTTGGAGACC
GCCAGCGAGCCTTGGAGGAGACGCGACGAGACCAGGGCATCACAGCGCAG
ACCGGAGATCCTTGCCGGCATTGTGGCGGCAAACTGTTCGCTAAAGAGTC
CAAGGGCATTTGTTGCAAGAATGGGAAGTACATCCTCCCGCGACTGCCGC
CACTACCCCCTTCATTGAAAGAATCGTACGATTCTCCGGAGCCATCAGCG
CAGAGGTTCAGGAAGGAATCGAGGATGTATAACTGCCGATGCAACTTCGC
CTCGCTCAACGTGGAGGATGGTGAACTCAAAAAAAAATTCGGTGACCATC
TCTTGTCCGTCCAAGGGAGCGACATTCTTCCCGACGTCCCTCCCACAACC
CTCCCCGACACTCCCACAAGCTCCCCCACACCCGTCCACGACATCGACAT
GGCTCCTACGACGCGTGGCAAGCGCACTCCCAGCGCCAAAGCAAAGGCCG
CCTTCGCCACCGCCAGCACGGGAGCGACGCCAACCAAAAATACAACCTCC
CCCAAGAACGGGAAGGGCAAGGTCCACCATCCCCACGTGAGTACGT
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protein sequence of Ec-00_003700.1

>Ec-00_003700.1 ID=Ec-00_003700.1|Name=Ec-00_003700.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=297bp
MTDPRDRGNNRRRDDTSTRNRRYRVVNATDINTRRGAQRAASADALNAHR
RAQYSASAEAINSRRTTRHADRAQQLNAARRRRRATVINNKRGLPFNDIF
HAEDDSISLRAIVGDRQRALEETRRDQGITAQTGDPCRHCGGKLFAKESK
GICCKNGKYILPRLPPLPPSLKESYDSPEPSAQRFRKESRMYNCRCNFAS
LNVEDGELKKKFGDHLLSVQGSDILPDVPPTTLPDTPTSSPTPVHDIDMA
PTTRGKRTPSAKAKAAFATASTGATPTKNTTSPKNGKGKVHHPHVST
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mRNA from alignment at chr_00:3979654..3981956-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_003700.1 ID=Ec-00_003700.1|Name=Ec-00_003700.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2303bp|location=Sequence derived from alignment at chr_00:3979654..3981956- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
CCCCGGAGACGCAGGAAAGGATAAAATGAATGGCAACATGTACCACTTCG
TGACGTCACATAGATAGGATGACAAAAGAAAAGTTGGAAAAGAAGAATAC
GGTAACCTGTAGTCTATTTCACATTAAATTTGTTAGTACACGCCGGACTT
CTTCCACACATCTGGGTTCGAATCCAAACACCAAACTGGAATACCCTAAT
ATTATCGATCGCCCTCGACAATTTGGGACGTTTGCCACCAGTTCGTCGTC
CTCCGGCGTCCGACCCATTGAATATACCTCCTGGAGTGAGTACGCGAACA
ACTCATCACAACACTACACCGTAGTTCTCCACCAGAAGACCCAAAAACGT
GTCGCAGGCGCTGCCAATTGAAATGGCTTTCTTCTTTGATGTACCCGCGA
AGATTTGCATCTTTTTGGGGACGGCTGCAGTGGTTATTCAATCAACTGCC
ATCACACTAGACATGCCGTGAGGATGATGCGTACTGCGGAACTACAGGAA
AGACCGAGTACGTGTTGGAGTCCATGCCAACTGCAAAGGGCAACAAAAAC
GATGATCGTGCGCCTGAGTGTCCCAAACATGTAATACTATCAGGTTGAAA
CAGCCGGACGCCAAGTGTGGAAAAAGGCTCGTATGACCCGACTTTCGGTG
CACATCAGCATCAACTGATGAAGTAAGCAGTATGACACCGACACAGCAAT
CGGGAAAAATTGAATATTTTTATTGGGCCTTCCTAAAGATTCCGAAAGAC
GACACGCACGTCGTTCACACGTCCAGCCCCACCAATAGGTTTCTAGCGCT
CAACCCTACCACACAGCAACCCAGTGCTTTACCACGCACTGTACACCCCA
ACTCATGACCGATCCAAGAGATCGCGGCAACAACCGCCGTCGAGACGACA
CAAGCACAAGGAACCGCCGGTACCGAGTTGTCAACGCCACCGACATAAAC
ACGCGTCGAGGGGCTCAGCGTGCTGCCTCCGCCGATGCCCTCAACGCCCA
TCGTAGAGCACAATACTCCGCGTCGGCAGAGGCCATCAACAGCCGTCGTA
CAACTCGCCATGCCGACAGAGCACAACAGCTCAACGCCGCACGTCGACGG
CGTAGAGCGACCGTCATCAACAACAAAAGGGGGTTGCCCTTCAACGACAT
CTTTCACGCCGAGGACGACTCCATCTCACTACGAGCCATTGTTGGAGACC
GCCAGCGAGCCTTGGAGGAGACGCGACGAGACCAGGGCATCACAGCGCAG
ACCGGAGATCCTTGCCGGCATTGTGGCGGCAAACTGTTCGCTAAAGAGTC
CAAGGGCATTTGTTGCAAGAATGGGAAGTACATCCTCCCGCGACTGCCGC
CACTACCCCCTTCATTGAAAGAATCGTACGATTCTCCGGAGCCATCAGCG
CAGAGGTTCAGGAAGGAATCGAGGATGTATAACTGCCGATGCAACTTCGC
CTCGCTCAACGTGGAGGATGGTGAACTCAAAAAAAAATTCGGTGACCATC
TCTTGTCCGTCCAAGGGAGGTGAGATCGATTCACATGTGCAACGATATAT
GCTACGATTGTATAACTAGGTATAGATTCATTCGTGTGGTCTTTCATTTC
TATTTTCCTTCGTGGTTTAAAACGAATGATCCACGTTTTTTTGTCGGGAT
TCTTACCTTTTCATATCTAATGGGCTGGTGCGTAATCGAAATCCGTCGAC
TCCTGCCTCCGCTCCCCCCGTCCCACCTCCCCACAACGACACAGCGACAT
TCTTCCCGACGTCCCTCCCACAACCCTCCCCGACACTCCCACAAGCTCCC
CCACACCCGTCCACGACATCGACATGGCTCCTACGACGCGTGGCAAGCGC
ACTCCCAGCGCCAAAGCAAAGGTACTCTTGCCGTTTCCACGCAACGTTTT
TACACAATACCAGCGCCCGCCGACCCATTCGTGCGTCTTGCCTTCACGCG
ACCACGTAGAAGCCCATGATCACGCCTTCCCCCAAGACACGGCCCGAACA
CGACTCATACGTTACCACCTCCATACCTTGTACACCCACCTTCCCTATCG
TCTTCTTGCGAAGCGGACACCGCTGATAGATTTTGTGAAAACCTCTTCAA
ACGAATTTGTCTACTTTGCACACCCTTACTCAAAGCCGAAGATTTCTCAC
CCTGTGTCCGTCCCTCCTTCCCTTCTTCGTTCACGCCTCGACGTCCTGTT
TAGGCCGCCTTCGCCACCGCCAGCACGGGAGCGACGCCAACCAAAAATAC
AACCTCCCCCAAGAACGGGAAGGGCAAGGTCCACCATCCCCACGTGAGTA
CGT
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Coding sequence (CDS) from alignment at chr_00:3979654..3981956-

>Ec-00_003700.1 ID=Ec-00_003700.1|Name=Ec-00_003700.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=891bp|location=Sequence derived from alignment at chr_00:3979654..3981956- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGACCGATCCAAGAGATCGCGGCAACAACCGCCGTCGAGACGACACAAG
CACAAGGAACCGCCGGTACCGAGTTGTCAACGCCACCGACATAAACACGC
GTCGAGGGGCTCAGCGTGCTGCCTCCGCCGATGCCCTCAACGCCCATCGT
AGAGCACAATACTCCGCGTCGGCAGAGGCCATCAACAGCCGTCGTACAAC
TCGCCATGCCGACAGAGCACAACAGCTCAACGCCGCACGTCGACGGCGTA
GAGCGACCGTCATCAACAACAAAAGGGGGTTGCCCTTCAACGACATCTTT
CACGCCGAGGACGACTCCATCTCACTACGAGCCATTGTTGGAGACCGCCA
GCGAGCCTTGGAGGAGACGCGACGAGACCAGGGCATCACAGCGCAGACCG
GAGATCCTTGCCGGCATTGTGGCGGCAAACTGTTCGCTAAAGAGTCCAAG
GGCATTTGTTGCAAGAATGGGAAGTACATCCTCCCGCGACTGCCGCCACT
ACCCCCTTCATTGAAAGAATCGTACGATTCTCCGGAGCCATCAGCGCAGA
GGTTCAGGAAGGAATCGAGGATGTATAACTGCCGATGCAACTTCGCCTCG
CTCAACGTGGAGGATGGTGAACTCAAAAAAAAATTCGGTGACCATCTCTT
GTCCGTCCAAGGGAGCGACATTCTTCCCGACGTCCCTCCCACAACCCTCC
CCGACACTCCCACAAGCTCCCCCACACCCGTCCACGACATCGACATGGCT
CCTACGACGCGTGGCAAGCGCACTCCCAGCGCCAAAGCAAAGGCCGCCTT
CGCCACCGCCAGCACGGGAGCGACGCCAACCAAAAATACAACCTCCCCCA
AGAACGGGAAGGGCAAGGTCCACCATCCCCACGTGAGTACG
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Synonyms
The feature 'Ec-00_003700.1' has the following synonyms
Synonym
Esi0235_0033
Esi_0235_0033