Ec-00_003660.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_003660.1
Unique NameEc-00_003660.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length201
Homology
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BLAST of Ec-00_003660.1 vs. uniprot
Match: D7FRZ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRZ4_ECTSI)

HSP 1 Score: 389 bits (998), Expect = 1.670e-136
Identity = 200/200 (100.00%), Postives = 200/200 (100.00%), Query Frame = 1 
Query:    1 MRTIINKDPTMRPKLVEFDRKHQSVMDKANQLKLQHSRPTESRSSNSNEGARSTPAGSPGTPXXXAKGCTQCDAPLGSCYECDKCHVYHTGGCRNTTAPEGESELLRRCKDCGVSASTTVPNPGAGKRDAPSGSDHGGSPSTPSGKGREPDPEGSNATKRRRGPGRAPTTDNIPTPKLPSSPEKDGKSFMLACSGPTCTS 600
            MRTIINKDPTMRPKLVEFDRKHQSVMDKANQLKLQHSRPTESRSSNSNEGARSTPAGSPGTPXXXAKGCTQCDAPLGSCYECDKCHVYHTGGCRNTTAPEGESELLRRCKDCGVSASTTVPNPGAGKRDAPSGSDHGGSPSTPSGKGREPDPEGSNATKRRRGPGRAPTTDNIPTPKLPSSPEKDGKSFMLACSGPTCTS
Sbjct:    1 MRTIINKDPTMRPKLVEFDRKHQSVMDKANQLKLQHSRPTESRSSNSNEGARSTPAGSPGTPXXXAKGCTQCDAPLGSCYECDKCHVYHTGGCRNTTAPEGESELLRRCKDCGVSASTTVPNPGAGKRDAPSGSDHGGSPSTPSGKGREPDPEGSNATKRRRGPGRAPTTDNIPTPKLPSSPEKDGKSFMLACSGPTCTS 200
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BLAST of Ec-00_003660.1 vs. uniprot
Match: D7G987_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G987_ECTSI)

HSP 1 Score: 374 bits (961), Expect = 9.390e-128
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 1 
Query:    1 MRTIINKDPTMRPKLVEFDRKHQSVMDKANQLKLQHSRPTESRSSNSNEGARSTPAGSPGTPXXXAKGCTQCDAPLGSCYECDKCHVYHTGGCRNTTAPEGESELLRRCKDCGVSASTTVPNPGAGKRDAPSGSDHGGSPSTPSGKGREPDPEGSNATKRRRGPGRAPTTDNIPTPKLPSSPEKDGKSFMLAC 579
            MRTIINKDPTMRPKLVEFDRKHQSVMDKANQLKLQHSRPTESRSSNSNEGARSTPAGSPGTPXXXAKGCTQCDAPLGSCYECDKCHVYHTGGCRNTTAPEGESELLRRCKDCGVSASTTVPNPGAGKRDAPSGSDHGGSPSTPSGKGREPDPEGSNATKRRRGPGRAPTTDNIPTPKLPSSPEKDGKSFMLAC
Sbjct:  109 MRTIINKDPTMRPKLVEFDRKHQSVMDKANQLKLQHSRPTESRSSNSNEGARSTPAGSPGTPXXXAKGCTQCDAPLGSCYECDKCHVYHTGGCRNTTAPEGESELLRRCKDCGVSASTTVPNPGAGKRDAPSGSDHGGSPSTPSGKGREPDPEGSNATKRRRGPGRAPTTDNIPTPKLPSSPEKDGKSFMLAC 301
The following BLAST results are available for this feature:
BLAST of Ec-00_003660.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FRZ4_ECTSI1.670e-136100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G987_ECTSI9.390e-128100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:3814728..3816370 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length603
Hectar predicted targeting categoryother localisation
Gene idEc-00_003660.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_003660Ec-00_003660Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 3814728..3816370 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003660.1.4Ec-00_003660.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3814728..3814749 -
Ec-00_003660.1.3Ec-00_003660.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3815054..3815398 -
Ec-00_003660.1.2Ec-00_003660.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3815601..3815827 -
Ec-00_003660.1.1Ec-00_003660.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3816362..3816370 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003660.1CDS:Ec-00_003660.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 3814728..3814749 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003660.1Ec-00_003660.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 3814728..3816370 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_003660.1 ID=Ec-00_003660.1|Name=Ec-00_003660.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=201bp
MRTIINKDPTMRPKLVEFDRKHQSVMDKANQLKLQHSRPTESRSSNSNEG
ARSTPAGSPGTPSSPAKGCTQCDAPLGSCYECDKCHVYHTGGCRNTTAPE
GESELLRRCKDCGVSASTTVPNPGAGKRDAPSGSDHGGSPSTPSGKGREP
DPEGSNATKRRRGPGRAPTTDNIPTPKLPSSPEKDGKSFMLACSGPTCTS
*
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spliced messenger RNA

>Ec-00_003660.1 ID=Ec-00_003660.1|Name=Ec-00_003660.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=603bp|location=Sequence derived from alignment at chr_00:3814728..3816370- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGAACCATCATCAACAAAGATCCAACAATGAGGCCCAAACTCGTGGA
GTTCGATCGGAAACACCAATCCGTCATGGACAAGGCGAACCAGCTCAAAC
TACAGCACAGCCGACCGACGGAGAGCAGGAGCAGCAACAGCAACGAGGGC
GCTCGGTCAACCCCGGCGGGATCGCCCGGCACTCCTTCTTCTCCAGCTAA
GGGGTGCACACAGTGCGACGCACCGCTTGGTTCATGTTACGAGTGCGACA
AGTGCCACGTTTACCACACGGGAGGTTGCCGGAACACGACGGCTCCAGAA
GGCGAGTCGGAGCTACTACGACGATGCAAGGATTGCGGAGTGAGCGCGAG
CACGACGGTGCCGAACCCGGGGGCTGGGAAACGTGATGCCCCGAGTGGTT
CTGACCATGGGGGTAGTCCGTCCACCCCGTCCGGCAAAGGCCGTGAGCCT
GACCCTGAGGGGAGCAACGCGACCAAGAGGAGGCGTGGTCCTGGGCGCGC
CCCGACGACTGACAACATACCCACCCCGAAACTACCGTCGTCGCCCGAAA
AGGACGGCAAGAGCTTCATGCTCGCGTGCAGTGGACCTACATGCACGAGC
TGA
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protein sequence of Ec-00_003660.1

>Ec-00_003660.1 ID=Ec-00_003660.1|Name=Ec-00_003660.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=201bp
MRTIINKDPTMRPKLVEFDRKHQSVMDKANQLKLQHSRPTESRSSNSNEG
ARSTPAGSPGTPSSPAKGCTQCDAPLGSCYECDKCHVYHTGGCRNTTAPE
GESELLRRCKDCGVSASTTVPNPGAGKRDAPSGSDHGGSPSTPSGKGREP
DPEGSNATKRRRGPGRAPTTDNIPTPKLPSSPEKDGKSFMLACSGPTCTS
*
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mRNA from alignment at chr_00:3814728..3816370-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_003660.1 ID=Ec-00_003660.1|Name=Ec-00_003660.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1643bp|location=Sequence derived from alignment at chr_00:3814728..3816370- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGAGAACCGTGAGACAGCGCACTGCTTGATAAGGATGTGACTCCCTCGC
CCGCGACGCTAAAACCAAATACATTTCGTGTTTTTTTTCGGTGTCCACCG
TGCTTGAAGTGTAGAGGTAATTTGTAGTCTGTGCGGAGATCCTCTGTATC
CCGGTTAGTAGCCTTTTTCCTAGGTTGTTTTCTGTTTCTTCTTTTCGTTT
TTGGGAGAAACACAGACCACGCCTGGGATGACATTTGCTCGTGTACATTT
TTTTTTTCCGAAAGGTGCATCCCTCTAGGGCAATTGGCTTGTGACCACGG
GAGGCGTCCGTGTCAGTTGTGGACCAGTACGGACATTAGAAGGTGCTGAG
CGGAGACCGGAATTGTTTTTTTTAATGTGAAGACAACAAGAAAACAACAA
CATCAACTACGACAGCAGCGGCGATGGCATGTTTACACGTCTTTTACTTC
ATGTTTTTCGTCAGCGATAACCCGTTCTCTCGCGCCTCGGCCACTCGCTC
CGTTCCTCTTTTGTTCCTCCGTGTCTCGGTGTATGATGTGCAGATCATCA
ACAAAGATCCAACAATGAGGCCCAAACTCGTGGAGTTCGATCGGAAACAC
CAATCCGTCATGGACAAGGCGAACCAGCTCAAACTACAGCACAGCCGACC
GACGGAGAGCAGGAGCAGCAACAGCAACGAGGGCGCTCGGTCAACCCCGG
CGGGATCGCCCGGCACTCCTTCTTCTCCAGCTAAGGGGTGCACACAGTGC
GACGCACCGCTTGGTTCATGGTGAGAGTTTCCCAGGCTCAGGTTCTTCTG
TACGTACGTACTCATTCCGTTTGTGTGCATCCGTTACTCCAACAAGAACC
CATCATCGGAGGGGTTATGGTAGGAGCAAAGGAAAGCATCACGTGGGTGT
ACGTGGATGGACTCGCCAGGTTCTCATCACTTGCGGCCTCCGCGTTTTTT
TTGTCCTGTCTCAATACCACAGTTACGAGTGCGACAAGTGCCACGTTTAC
CACACGGGAGGTTGCCGGAACACGACGGCTCCAGAAGGCGAGTCGGAGCT
ACTACGACGATGCAAGGATTGCGGAGTGAGCGCGAGCACGACGGTGCCGA
ACCCGGGGGCTGGGAAACGTGATGCCCCGAGTGGTTCTGACCATGGGGGT
AGTCCGTCCACCCCGTCCGGCAAAGGCCGTGAGCCTGACCCTGAGGGGAG
CAACGCGACCAAGAGGAGGCGTGGTCCTGGGCGCGCCCCGACGACTGACA
ACATACCCACCCCGAAACTACCGTCGTCGCCCGAAAAGGACGGCAAGAGC
TTCATGCTCGCGTGCAGGTGGGGACCACAACATAGAGCACACAGCTAGCT
GCGGGCTTATCTATTTTTGCTTTGCTAGAGTACATACAGGTATTGCGTTG
CGTCATCTCCAACCCCCATCCATGCTGAGTGCAGAATAATGTGTTAGGTC
CCGTCGGAAGCACCACAATCGTGAGCGCTGTCCACCCCATCCTTGTAGTA
CAATCGCTTGCATCGGATACATACATAGTATCCCTGCCCCCGAAGTATGT
CCCTGTTTGGCGTTGTAGTCACAACGGACCTCCTACCTTGTTGTCGACCA
CCCGCTGCTTACAGGGACCAGTGGACCTACATGCACGAGCTGA
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Coding sequence (CDS) from alignment at chr_00:3814728..3816370-

>Ec-00_003660.1 ID=Ec-00_003660.1|Name=Ec-00_003660.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=603bp|location=Sequence derived from alignment at chr_00:3814728..3816370- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGAGAACCATCATCAACAAAGATCCAACAATGAGGCCCAAACTCGTGGA
GTTCGATCGGAAACACCAATCCGTCATGGACAAGGCGAACCAGCTCAAAC
TACAGCACAGCCGACCGACGGAGAGCAGGAGCAGCAACAGCAACGAGGGC
GCTCGGTCAACCCCGGCGGGATCGCCCGGCACTCCTTCTTCTCCAGCTAA
GGGGTGCACACAGTGCGACGCACCGCTTGGTTCATGTTACGAGTGCGACA
AGTGCCACGTTTACCACACGGGAGGTTGCCGGAACACGACGGCTCCAGAA
GGCGAGTCGGAGCTACTACGACGATGCAAGGATTGCGGAGTGAGCGCGAG
CACGACGGTGCCGAACCCGGGGGCTGGGAAACGTGATGCCCCGAGTGGTT
CTGACCATGGGGGTAGTCCGTCCACCCCGTCCGGCAAAGGCCGTGAGCCT
GACCCTGAGGGGAGCAACGCGACCAAGAGGAGGCGTGGTCCTGGGCGCGC
CCCGACGACTGACAACATACCCACCCCGAAACTACCGTCGTCGCCCGAAA
AGGACGGCAAGAGCTTCATGCTCGCGTGCAGTGGACCTACATGCACGAGC
TGA
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Synonyms
The feature 'Ec-00_003660.1' has the following synonyms
Synonym
Esi0225_0051
Esi_0225_0051