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Homology
BLAST of Ec-00_003650.3 vs. uniprot
Match: D7FRZ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRZ3_ECTSI) HSP 1 Score: 149 bits (375), Expect = 1.170e-38 Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 1
Query: 1486 GRGQLPTQTSPSSSGQAEAPAALYLQVDSANQRAFSTPALIITSERGYFENNGVRRTDDDVDAHGKQESQLCDGG 1710
GRGQLPTQTSPSSSGQAEAPAALYLQVDSANQRAFSTPALIITSERGYFENNGVRRTDDDVDAHGKQESQLCDGG
Sbjct: 12 GRGQLPTQTSPSSSGQAEAPAALYLQVDSANQRAFSTPALIITSERGYFENNGVRRTDDDVDAHGKQESQLCDGG 86
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Length | 3737 |
Hectar predicted targeting category | signal peptide |
Gene id | Ec-00_003650.3 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Ec-00_003650.3 ID=Ec-00_003650.3|Name=Ec-00_003650.3|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=121bp MLWWLVRVRCDRPFCFRSSYVFFLFIISMHASVTAPLLPFDLLRTGRGQL PTQTSPSSSGQAEAPAALYLQVDSANQRAFSTPALIITSERGYFENNGVR RTDDDVDAHGKQESQLCDGG* back to topspliced messenger RNA >Ec-00_003650.3 ID=Ec-00_003650.3|Name=Ec-00_003650.3|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=3737bp|location=Sequence derived from alignment at chr_00:3808176..3812684+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.
CGGTTTGAATTATGAACATCGGTTTGAGAATTTTCTCGTGGTTGGAGTAA ATCGTTCTTTTGACTTGAGGATTGGAATCGAAAACACCGTTTTGATTGCC GCCTTTCCCATGTCCTCTCCCAAAAAGCAAGTTTCTGGAGCAGCCCCAAA CGGCCTCAGGCGAGCTTCTGTGGCGGTGAGCACGTACCCTGGCATGTACT GAGGGGTCAGCTTAGCTTGGCCGTTGCGTTGGGTCCGCCGAGAGATAGAG AAGCAACTCATCGGTGATCAGTTGTATTTTTTTAGAGAATAGCAAGAGAC GTGGTGTCGTGTGTGTGTGTTTCGCGTACCCTCTCTCTCCCCTCCCGACA ACACACACCCTCGCACCTGCACCTGCTGCACATCCGTACAGGCCACCCAT ACATGGATGTGGTGAGGATCCAAACATGAGCACTCCTCCCCTCCTCGGGG GCTCGTTCCTTCGCAGTAGAGCTGCTCTTCGGCTGCAGTGTGCACGCGCA TCCGAGAGAGCTCGCTGCTGTACCCACCAGGCCCACCCGCTCTTTCCGGT TCTCGGAACGAATAAACAAAAAAGGCACGCACGTGTGTGTGTCCCCAGCC TCTACCGGGCGGCCACCGCCGTAAACTGCTAGCGGGTGATGATCTGATGT ATTTGGTTGCATTGTTCGAGGTGAGGTAAAATAGTGCAGCAGCATCCCAA CGCCCTCTCCGTGCTGCTCCGTTCGCCCCCAGTCTGATCTGAATCGACTT CTTCGACAGCAGCACCTGATCTCACCACGTCACCTCATCAAGCAGCAAGC AACCACTCGGAGGAACATTTTATCTTTTTGGACAAGCACCCGAGCCGTGC TCGGCACCCGAGAGAGCAGCGGACAGGGCGTACCCAGTAGCCGTGAGCGA CCTAGGTCTTTGGAGCAATGTCGGCGCGTACCTTTGGTTCATACTGTGCT GGTGAGTGGAGAGATAGAGCAAACAGCACCACACAGAAGAGATGATATGT ATGTAGCTGTGTAAGTAGCAAAGTGCTTGTAGCAGTGTATGCAAATACCG TATATGACACAAGATAACACACCCCCTTGACCGATTTTCAAAGACCGATT TCTCAACAGCAGGAAGACTCACACCGCCGAAAACGGCGGCGTTGGAACCG TCTCGTTGAGAGCTTTTGGAAAATGTATCATTTCGTTTATGTATCCTCTT CGTCGTCGAGTAATCGATCTTTGAAAATCGGGCCAGGGTGTGTGTTATCT TGTGTCATATACGGTAGCGCAGTTGTTGCCGACATGTGTAAGAAGGGTAG GTACCCAGGGTTGACAGTCACGTGGATCGGGTGCTTGGGAAGCGCATTGT GATGTTGTGGTGGCTCGTGCGTGTGCGCTGTGACCGTCCGTTCTGTTTTC GTTCGTCATATGTCTTCTTCCTCTTTATTATCTCGATGCATGCCTCTGTG ACTGCTCCTCTTCTTCCGTTTGACCTCCTGAGAACAGGGCGAGGGCAACT ACCCACACAGACGTCGCCATCAAGCTCCGGCCAAGCTGAGGCACCTGCTG CATTGTACCTACAAGTGGACTCTGCGAATCAGAGAGCCTTTAGTACCCCT GCATTGATCATTACCTCGGAGAGGGGGTACTTTGAAAATAACGGCGTGCG ACGTACTGATGACGACGTGGATGCTCATGGAAAGCAAGAATCACAGCTGT GTGATGGGGGGTGATGGGTGATGATGAGCTTTTAGGAAGTGGGTGAGAAG ATATGAGGGCCAACACATCTGACAGAGAAGGTCATGTTGGGCGAAAGACT TCAAGTTCGCGACACGGGCCGTGCACGTGATGGAGAAGAGCCCGGGCCGT GTATACTGGTGATGCGGCTGCAACAAGGGTCAACCAAAGCTGGCGGGGAT GCGTTGGCTAATAATATGTAGAATTTGTGGTTGGCGCGCATGAAGCGTTG CGGTGGAGTGCAAAGTATTTGTGGTAATAATGTTTGTTCCGCAGTGTGGT AGCATTTATTTGAGGGCAAATGCTGTCAGGGGTTCATAGTTGAAGATCGT CTGCACGAATACCGCCCTAGAGGTGGTAGGAAGAACTTTTGTTATCAGCG GGTGGCGGTACAATAGGGTCAGGACAATTTCTTCGTCGTTGATGGCTGGC TGCGTCTCGCCTGAGGTAGACCATCATGGGTTGTTTGAACGTGAGAACAA GTATTAATAGCACTGGGTTAGAGACCCCGTCTTGGTTTACTGGACGTTGG GTCCGTGTACAAAATAAAGTACGGTGCCTATTGCTCCACAAAAATGAGGG GAAAAAATCAGCTGGTGGTACTGCAAGGCACTGCTGCTGCAGTGCAGGTA ACAAGACCGCGTGCGGCATTTGTTACCCGAAAGCACCTGAGAAAAAAATA TCTAAGTCTACGTAATTACAAGATAAGACAAACGTCTGGGATACGACATT GGTGGTGTCGGCGCGTGTTCTGTGTCATCACGCTCGCGGTCTCTTGTCGA GAGCGTATGCATGAAGGAGTTACTTTAGTTCCTTATATTCCTCCAATCTG AGGTCCTCTTTCCTTGGATCCTTTCGAGTTTGAAGGGATTGAATGATGGG ATATAATATTTATTTGTTGTCTGTTGTGTGACGGCGGGACGAAACGACGT GTGATCACGACACGAACGGACGGATGAGGTTTTTGCTTTAGTTCCTTATA TTATTATTAGGGAGAGACAATACACGAGCAGCAGGCAAAGAAGGCCCTGC TGCAACAAACAGCAAGGGTCCACCCAAATCCATCACATCTGCGTAACCCC CTCGGAGATGTCGGAGATGTGCATCCTGCCGAGTACACACACAAAGCCCC CTACTCGGTACGAGATAGGATCTACGATACCTCCCGTACATATCGCCAGG AAAAAACGGCAACAAATCAAAACTCCAAAACAAAGAATCATCCTTTCTTT GAAAAATACTCCTTAAATATCAACTTTACAGGAGAGACACGCCATGAAGA CTTTTGAACGGAGAACTCCGGGAAAACGCGGCAACTATTACTACTTTGGA GAAGATCGTTGCACGAAACCATGGTTCAGCCCATTGACCAATATCAAATA AGCTTCGGAAAGCACATAATAGGCCTCAACCATGTCTTACCAAAATATGC CAATTCCTTCCTCCTACATATATCATAGTCTTTTGAAATGTACGGCAACT CTCTTCACCAATTATTATACCGTTTTTCTAACATCGAGACAACATCGATA TCTTAACATCTAGCTCCCTGCGGCACTATTTCCCAAAACATGAAAGAAAG CTTTACAGCCCCCCCCCGCTGTATCATCTCCCAAAAGATAAGTTCGAACA TCCCCCTTGTTCGGCATCTCACAAAACATAATAAACAGCCCCCCCGCTGC AGTACCTTCCAAAACACAAAATGCAAGTCACCCGGTGCCATTTCGTTTGG ATCGCAAAAACTACGAATAAACAACGTGCAGTATGCAGGAATGACACTCG ATCGCAATCCTGAAAAAAAGAGAATAGTGCAACCCCCCCCCCATGCTTTT CGGAGCAGTACCTACAAAACACAAACGCATGTAAGTAAGTACAACAACGA CACATAAAAAAAAAAACTGCTGCATGCAAGGACAGGATGTTTGCCGCACC CAACACGAGCACGTGCCCATCACATANNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN back to topprotein sequence of Ec-00_003650.3 >Ec-00_003650.3 ID=Ec-00_003650.3|Name=Ec-00_003650.3|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=121bp
MLWWLVRVRCDRPFCFRSSYVFFLFIISMHASVTAPLLPFDLLRTGRGQL PTQTSPSSSGQAEAPAALYLQVDSANQRAFSTPALIITSERGYFENNGVR RTDDDVDAHGKQESQLCDGG* back to topmRNA from alignment at chr_00:3808176..3812684+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >Ec-00_003650.3 ID=Ec-00_003650.3|Name=Ec-00_003650.3|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=4509bp|location=Sequence derived from alignment at chr_00:3808176..3812684+ (Ectocarpus species7 Ec32 male_plus_femaleSDR) CGGTTTGAATTATGAACATCGGTTTGAGAATTTTCTCGTGGTTGGAGTAA
ATCGTTCTTTTGACTTGAGGATTGGAATCGAAAACACCGTTTTGATTGCC
GCCTTTCCCATGTCCTCTCCCAAAAAGCAAGTTTCTGGAGCAGCCCCAAA
CGGCCTCAGGCGAGCTTCTGTGGCGGTGAGCACGTACCCTGGCATGTACT
GAGGGGTCAGCTTAGCTTGGCCGTTGCGTTGGGTCCGCCGAGAGATAGAG
AAGCAACTCATCGGTGATCAGTTGTATTTTTTTAGAGAATAGCAAGAGAC
GTGGTGTCGTGTGTGTGTGTTTCGCGTACCCTCTCTCTCCCCTCCCGACA
ACACACACCCTCGCACCTGCACCTGCTGCACATCCGTACAGGCCACCCAT
ACATGGATGTGGTGAGGATCCAAACATGAGCACTCCTCCCCTCCTCGGGG
GCTCGTTCCTTCGCAGTAGAGCTGCTCTTCGGCTGCAGTGTGCACGCGCA
TCCGAGAGAGCTCGCTGCTGTACCCACCAGGCCCACCCGCTCTTTCCGGT
TCTCGGAACGAATAAACAAAAAAGGCACGCACGTGTGTGTGTCCCCAGCC
TCTACCGGGCGGCCACCGCCGTAAACTGCTAGCGGGTGATGATCTGATGT
ATTTGGTTGCATTGTTCGAGGTGAGGTAAAATAGTGCAGCAGCATCCCAA
CGCCCTCTCCGTGCTGCTCCGTTCGCCCCCAGTCTGATCTGAATCGACTT
CTTCGACAGCAGCACCTGATCTCACCACGTCACCTCATCAAGCAGCAAGC
AACCACTCGGAGGAACATTTTATCTTTTTGGACAAGCACCCGAGCCGTGC
TCGGCACCCGAGAGAGCAGCGGACAGGGCGTACCCAGTAGCCGTGAGCGA
CCTAGGTCTTTGGAGCAATGTCGGCGCGTACCTTTGGTTCATACTGTGCT
GGTGAGTGGAGAGATAGAGCAAACAGCACCACACAGAAGAGATGATATGT
ATGTAGCTGTGTAAGTAGCAAAGTGCTTGTAGCAGTGTATGCAAATACCG
TATATGACACAAGATAACACACCCCCTTGACCGATTTTCAAAGACCGATT
TCTCAACAGCAGGAAGACTCACACCGCCGAAAACGGCGGCGTTGGAACCG
TCTCGTTGAGAGCTTTTGGAAAATGTATCATTTCGTTTATGTATCCTCTT
CGTCGTCGAGTAATCGATCTTTGAAAATCGGGCCAGGGTGTGTGTTATCT
TGTGTCATATACGGTAGCGCAGTTGTTGCCGACATGTGTAAGAAGGGTAG
GTACCCAGGGTTGACAGTCACGTGGATCGGGTGCTTGGGAAGCGCATTGT
GATGTTGTGGTGGCTCGTGCGTGTGCGCTGTGACCGTCCGTTCTGTTTTC
GTTCGTCATATGTCTTCTTCCTCTTTATTATCTCGATGCATGCCTCTGTG
ACTGCTCCTCTTCTTCCGTTTGACCTCCTGAGAACAGGGCGAGGGCAACT
ACCCACACAGACGTCGCCATCAAGCTCCGGCCAAGCTGAGGCACCTGCTG
CATTGTACCTACAAGTGGACTCTGCGAATCAGAGAGCCTTTAGTACCCCT
GCATTGATCATTACCTCGGAGAGGCAAGTAACCAACCAAGTGCAGCCATA
TCCACGCTGGGATGGATGGGCAATGCGTAGGGCCAAAGTGAACGGTCGTT
AAGTACGATTGTACATCGTACAACGTATCTATGCATACTGCTGCTGTCAA
TGGTGGTGCCCCGCTTGATGTTCTCCTTGGGGATTAGATGGCCGTCAAGC
ACGAAGGTGTTTCTGCTGTGCATTGCGTAGTACAGTGCGTCCCGCGTTGC
GATGAAGCTGGTGGTGTTGTTTTTCTTGACTCCGCCGCCGGTCGCTGCTG
CTCATGCTACTATTTTCTGCTGCTGCCGCTCCTGCTCTTCGCTCTAAAGG
GGGTACTTTGAAAATAACGGCGTGCGACGTACTGATGACGACGTGGATGC
TCATGGAAAGCAAGAATCACAGCTGTGTGATGGGGGGTGATGGGTGATGA
TGAGGTAGGTGCGGTTGTTTCCTAACGTATTAGTCTATGTGGCCGTGGAC
AGCAGTTTCACGGGCATCCATTTTTTGTTGATGCTGTATGTCGTGAGACG
AAGGAGGTGGATGCATGAGTGTCGTGTGTAGTCCAGAGGAGGCGTTTACA
TCACCCTCTACAAGGCGATGTTCTTGTACTAGTTGCCGCTCGCCCAGGAA
CACTTTTCCATCTTAAAATGCGCCGCGAGACTTTTTGTTCTGGTACCTTG
AGGGATGGTACGAAAGTGACGGTGTTGTTGTGAAGACATGCAGCCTGTTA
ACAACATCGGCACGTTTCCTCGCTTTTCCTACTCTTGATTTCGTACTAGT
GAGCAGTGGTCGCCGTGCGTATTATGCATAGGAATTGAAAACTTGTTGCT
TCCCTTCCGCCCGGCCCGCCTACTCTCCCTTGATCACGAACATCGCGAAG
CTTTTAGGAAGTGGGTGAGAAGATATGAGGGCCAACACATCTGACAGAGA
AGGTCATGTTGGGCGAAAGACTTCAAGTTCGCGACACGGGCCGTGCACGT
GATGGAGAAGAGCCCGGGCCGTGTATACTGGTGATGCGGCTGCAACAAGG
GTCAACCAAAGCTGGCGGGGATGCGTTGGCTAATAATATGTAGAATTTGT
GGTTGGCGCGCATGAAGCGTTGCGGTGGAGTGCAAAGTATTTGTGGTAAT
AATGTTTGTTCCGCAGTGTGGTAGCATTTATTTGAGGGCAAATGCTGTCA
GGGGTTCATAGTTGAAGATCGTCTGCACGAATACCGCCCTAGAGGTGGTA
GGAAGAACTTTTGTTATCAGCGGGTGGCGGTACAATAGGGTCAGGACAAT
TTCTTCGTCGTTGATGGCTGGCTGCGTCTCGCCTGAGGTAGACCATCATG
GGTTGTTTGAACGTGAGAACAAGTATTAATAGCACTGGGTTAGAGACCCC
GTCTTGGTTTACTGGACGTTGGGTCCGTGTACAAAATAAAGTACGGTGCC
TATTGCTCCACAAAAATGAGGGGAAAAAATCAGCTGGTGGTACTGCAAGG
CACTGCTGCTGCAGTGCAGGTAACAAGACCGCGTGCGGCATTTGTTACCC
GAAAGCACCTGAGAAAAAAATATCTAAGTCTACGTAATTACAAGATAAGA
CAAACGTCTGGGATACGACATTGGTGGTGTCGGCGCGTGTTCTGTGTCAT
CACGCTCGCGGTCTCTTGTCGAGAGCGTATGCATGAAGGAGTTACTTTAG
TTCCTTATATTCCTCCAATCTGAGGTCCTCTTTCCTTGGATCCTTTCGAG
TTTGAAGGGATTGAATGATGGGATATAATATTTATTTGTTGTCTGTTGTG
TGACGGCGGGACGAAACGACGTGTGATCACGACACGAACGGACGGATGAG
GTTTTTGCTTTAGTTCCTTATATTATTATTAGGGAGAGACAATACACGAG
CAGCAGGCAAAGAAGGCCCTGCTGCAACAAACAGCAAGGGTCCACCCAAA
TCCATCACATCTGCGTAACCCCCTCGGAGATGTCGGAGATGTGCATCCTG
CCGAGTACACACACAAAGCCCCCTACTCGGTACGAGATAGGATCTACGAT
ACCTCCCGTACATATCGCCAGGAAAAAACGGCAACAAATCAAAACTCCAA
AACAAAGAATCATCCTTTCTTTGAAAAATACTCCTTAAATATCAACTTTA
CAGGAGAGACACGCCATGAAGACTTTTGAACGGAGAACTCCGGGAAAACG
CGGCAACTATTACTACTTTGGAGAAGATCGTTGCACGAAACCATGGTTCA
GCCCATTGACCAATATCAAATAAGCTTCGGAAAGCACATAATAGGCCTCA
ACCATGTCTTACCAAAATATGCCAATTCCTTCCTCCTACATATATCATAG
TCTTTTGAAATGTACGGCAACTCTCTTCACCAATTATTATACCGTTTTTC
TAACATCGAGACAACATCGATATCTTAACATCTAGCTCCCTGCGGCACTA
TTTCCCAAAACATGAAAGAAAGCTTTACAGCCCCCCCCCGCTGTATCATC
TCCCAAAAGATAAGTTCGAACATCCCCCTTGTTCGGCATCTCACAAAACA
TAATAAACAGCCCCCCCGCTGCAGTACCTTCCAAAACACAAAATGCAAGT
CACCCGGTGCCATTTCGTTTGGATCGCAAAAACTACGAATAAACAACGTG
CAGTATGCAGGAATGACACTCGATCGCAATCCTGAAAAAAAGAGAATAGT
GCAACCCCCCCCCCATGCTTTTCGGAGCAGTACCTACAAAACACAAACGC
ATGTAAGTAAGTACAACAACGACACATAAAAAAAAAAACTGCTGCATGCA
AGGACAGGATGTTTGCCGCACCCAACACGAGCACGTGCCCATCACATANN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNN back to topCoding sequence (CDS) from alignment at chr_00:3808176..3812684+ >Ec-00_003650.3 ID=Ec-00_003650.3|Name=Ec-00_003650.3|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=363bp|location=Sequence derived from alignment at chr_00:3808176..3812684+ (Ectocarpus species7 Ec32 male_plus_femaleSDR) ATGTTGTGGTGGCTCGTGCGTGTGCGCTGTGACCGTCCGTTCTGTTTTCG TTCGTCATATGTCTTCTTCCTCTTTATTATCTCGATGCATGCCTCTGTGA CTGCTCCTCTTCTTCCGTTTGACCTCCTGAGAACAGGGCGAGGGCAACTA CCCACACAGACGTCGCCATCAAGCTCCGGCCAAGCTGAGGCACCTGCTGC ATTGTACCTACAAGTGGACTCTGCGAATCAGAGAGCCTTTAGTACCCCTG CATTGATCATTACCTCGGAGAGGGGGTACTTTGAAAATAACGGCGTGCGA CGTACTGATGACGACGTGGATGCTCATGGAAAGCAAGAATCACAGCTGTG TGATGGGGGGTGA back to top
Synonyms
The feature 'Ec-00_003650.3' has the following synonyms
Synonym |
Esi0225_0050 |
Esi_0225_0050 |
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