Ec-00_003650.2 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ec-00_003650.2
Unique Name	Ec-00_003650.2
Type	mRNA
Organism	Ectocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length	106

Homology

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BLAST of Ec-00_003650.2 vs. uniprot
Match: D7FRZ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRZ3_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 1.510e-17
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 1

Query:  793 RGQLPTQTSPSSSGQAEAPAALYLQVDSANQRAFSTPALIITSERG 930
            RGQLPTQTSPSSSGQAEAPAALYLQVDSANQRAFSTPALIITSERG
Sbjct:   13 RGQLPTQTSPSSSGQAEAPAALYLQVDSANQRAFSTPALIITSERG 58

The following BLAST results are available for this feature:

BLAST of Ec-00_003650.2 vs. uniprot

BLAST of Ec-00_003650.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
D7FRZ3_ECTSI	1.510e-17	100.00	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr_00	contig	chr_00:3808176..3812684 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR	2016-10-08

Properties


Property Name	Value
Length	3043
Hectar predicted targeting category	other localisation
Gene id	Ec-00_003650.2

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ec-00_003650	Ec-00_003650	Ectocarpus species7 Ec32 male_plus_femaleSDR	gene	chr_00 3808176..3812684 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_003650.2	Ec-00_003650.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	polypeptide	chr_00 3812237..3812554 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_003650.2.1	Ec-00_003650.2.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 3808176..3808749 +
Ec-00_003650.2.2	Ec-00_003650.2.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 3808908..3809126 +
Ec-00_003650.2.3	Ec-00_003650.2.3	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 3809663..3809798 +
Ec-00_003650.2.4	Ec-00_003650.2.4	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 3810125..3810229 +
Ec-00_003650.2.5	Ec-00_003650.2.5	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 3810676..3812684 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_003650	5UTR:Ec-00_003650.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	five_prime_UTR	chr_00 3808176..3808749 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_003650.2	CDS:Ec-00_003650.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	CDS	chr_00 3812237..3812554 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_003650	3UTR:Ec-00_003650.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	three_prime_UTR	chr_00 3812555..3812684 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at chr_00:3808176..3812684+
coding sequence from alignment at chr_00:3808176..3812684+

mRNA sequence

>Ec-00_003650.2 ID=Ec-00_003650.2|Name=Ec-00_003650.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=106bp
MKESFTAPPRCIISQKISSNIPLVRHLTKHNKQPPRCSTFQNTKCKSPGA
ISFGSQKLRINNVQYAGMTLDRNPEKKRIVQPPPHAFRSSTYKTQTHVSK
YNNDT*

spliced messenger RNA

>Ec-00_003650.2 ID=Ec-00_003650.2|Name=Ec-00_003650.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=3043bp|location=Sequence derived from alignment at chr_00:3808176..3812684+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
CGGTTTGAATTATGAACATCGGTTTGAGAATTTTCTCGTGGTTGGAGTAA
ATCGTTCTTTTGACTTGAGGATTGGAATCGAAAACACCGTTTTGATTGCC
GCCTTTCCCATGTCCTCTCCCAAAAAGCAAGTTTCTGGAGCAGCCCCAAA
CGGCCTCAGGCGAGCTTCTGTGGCGGTGAGCACGTACCCTGGCATGTACT
GAGGGGTCAGCTTAGCTTGGCCGTTGCGTTGGGTCCGCCGAGAGATAGAG
AAGCAACTCATCGGTGATCAGTTGTATTTTTTTAGAGAATAGCAAGAGAC
GTGGTGTCGTGTGTGTGTGTTTCGCGTACCCTCTCTCTCCCCTCCCGACA
ACACACACCCTCGCACCTGCACCTGCTGCACATCCGTACAGGCCACCCAT
ACATGGATGTGGTGAGGATCCAAACATGAGCACTCCTCCCCTCCTCGGGG
GCTCGTTCCTTCGCAGTAGAGCTGCTCTTCGGCTGCAGTGTGCACGCGCA
TCCGAGAGAGCTCGCTGCTGTACCCACCAGGCCCACCCGCTCTTTCCGGT
TCTCGGAACGAATAAACAAAAAAGTCTGATCTGAATCGACTTCTTCGACA
GCAGCACCTGATCTCACCACGTCACCTCATCAAGCAGCAAGCAACCACTC
GGAGGAACATTTTATCTTTTTGGACAAGCACCCGAGCCGTGCTCGGCACC
CGAGAGAGCAGCGGACAGGGCGTACCCAGTAGCCGTGAGCGACCTAGGTC
TTTGGAGCAATGTCGGCGCGTACCTTTGGTTCATACTGTGCTGGGCGAGG
GCAACTACCCACACAGACGTCGCCATCAAGCTCCGGCCAAGCTGAGGCAC
CTGCTGCATTGTACCTACAAGTGGACTCTGCGAATCAGAGAGCCTTTAGT
ACCCCTGCATTGATCATTACCTCGGAGAGGGGGTACTTTGAAAATAACGG
CGTGCGACGTACTGATGACGACGTGGATGCTCATGGAAAGCAAGAATCAC
AGCTGTGTGATGGGGGGTGATGGGTGATGATGAGCTTTTAGGAAGTGGGT
GAGAAGATATGAGGGCCAACACATCTGACAGAGAAGGTCATGTTGGGCGA
AAGACTTCAAGTTCGCGACACGGGCCGTGCACGTGATGGAGAAGAGCCCG
GGCCGTGTATACTGGTGATGCGGCTGCAACAAGGGTCAACCAAAGCTGGC
GGGGATGCGTTGGCTAATAATATGTAGAATTTGTGGTTGGCGCGCATGAA
GCGTTGCGGTGGAGTGCAAAGTATTTGTGGTAATAATGTTTGTTCCGCAG
TGTGGTAGCATTTATTTGAGGGCAAATGCTGTCAGGGGTTCATAGTTGAA
GATCGTCTGCACGAATACCGCCCTAGAGGTGGTAGGAAGAACTTTTGTTA
TCAGCGGGTGGCGGTACAATAGGGTCAGGACAATTTCTTCGTCGTTGATG
GCTGGCTGCGTCTCGCCTGAGGTAGACCATCATGGGTTGTTTGAACGTGA
GAACAAGTATTAATAGCACTGGGTTAGAGACCCCGTCTTGGTTTACTGGA
CGTTGGGTCCGTGTACAAAATAAAGTACGGTGCCTATTGCTCCACAAAAA
TGAGGGGAAAAAATCAGCTGGTGGTACTGCAAGGCACTGCTGCTGCAGTG
CAGGTAACAAGACCGCGTGCGGCATTTGTTACCCGAAAGCACCTGAGAAA
AAAATATCTAAGTCTACGTAATTACAAGATAAGACAAACGTCTGGGATAC
GACATTGGTGGTGTCGGCGCGTGTTCTGTGTCATCACGCTCGCGGTCTCT
TGTCGAGAGCGTATGCATGAAGGAGTTACTTTAGTTCCTTATATTCCTCC
AATCTGAGGTCCTCTTTCCTTGGATCCTTTCGAGTTTGAAGGGATTGAAT
GATGGGATATAATATTTATTTGTTGTCTGTTGTGTGACGGCGGGACGAAA
CGACGTGTGATCACGACACGAACGGACGGATGAGGTTTTTGCTTTAGTTC
CTTATATTATTATTAGGGAGAGACAATACACGAGCAGCAGGCAAAGAAGG
CCCTGCTGCAACAAACAGCAAGGGTCCACCCAAATCCATCACATCTGCGT
AACCCCCTCGGAGATGTCGGAGATGTGCATCCTGCCGAGTACACACACAA
AGCCCCCTACTCGGTACGAGATAGGATCTACGATACCTCCCGTACATATC
GCCAGGAAAAAACGGCAACAAATCAAAACTCCAAAACAAAGAATCATCCT
TTCTTTGAAAAATACTCCTTAAATATCAACTTTACAGGAGAGACACGCCA
TGAAGACTTTTGAACGGAGAACTCCGGGAAAACGCGGCAACTATTACTAC
TTTGGAGAAGATCGTTGCACGAAACCATGGTTCAGCCCATTGACCAATAT
CAAATAAGCTTCGGAAAGCACATAATAGGCCTCAACCATGTCTTACCAAA
ATATGCCAATTCCTTCCTCCTACATATATCATAGTCTTTTGAAATGTACG
GCAACTCTCTTCACCAATTATTATACCGTTTTTCTAACATCGAGACAACA
TCGATATCTTAACATCTAGCTCCCTGCGGCACTATTTCCCAAAACATGAA
AGAAAGCTTTACAGCCCCCCCCCGCTGTATCATCTCCCAAAAGATAAGTT
CGAACATCCCCCTTGTTCGGCATCTCACAAAACATAATAAACAGCCCCCC
CGCTGCAGTACCTTCCAAAACACAAAATGCAAGTCACCCGGTGCCATTTC
GTTTGGATCGCAAAAACTACGAATAAACAACGTGCAGTATGCAGGAATGA
CACTCGATCGCAATCCTGAAAAAAAGAGAATAGTGCAACCCCCCCCCCAT
GCTTTTCGGAGCAGTACCTACAAAACACAAACGCATGTAAGTAAGTACAA
CAACGACACATAAAAAAAAAAACTGCTGCATGCAAGGACAGGATGTTTGC
CGCACCCAACACGAGCACGTGCCCATCACATANNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

protein sequence of Ec-00_003650.2

>Ec-00_003650.2 ID=Ec-00_003650.2|Name=Ec-00_003650.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=106bp
MKESFTAPPRCIISQKISSNIPLVRHLTKHNKQPPRCSTFQNTKCKSPGA
ISFGSQKLRINNVQYAGMTLDRNPEKKRIVQPPPHAFRSSTYKTQTHVSK
YNNDT*

mRNA from alignment at chr_00:3808176..3812684+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ec-00_003650.2 ID=Ec-00_003650.2|Name=Ec-00_003650.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=4509bp|location=Sequence derived from alignment at chr_00:3808176..3812684+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
CGGTTTGAATTATGAACATCGGTTTGAGAATTTTCTCGTGGTTGGAGTAA
ATCGTTCTTTTGACTTGAGGATTGGAATCGAAAACACCGTTTTGATTGCC
GCCTTTCCCATGTCCTCTCCCAAAAAGCAAGTTTCTGGAGCAGCCCCAAA
CGGCCTCAGGCGAGCTTCTGTGGCGGTGAGCACGTACCCTGGCATGTACT
GAGGGGTCAGCTTAGCTTGGCCGTTGCGTTGGGTCCGCCGAGAGATAGAG
AAGCAACTCATCGGTGATCAGTTGTATTTTTTTAGAGAATAGCAAGAGAC
GTGGTGTCGTGTGTGTGTGTTTCGCGTACCCTCTCTCTCCCCTCCCGACA
ACACACACCCTCGCACCTGCACCTGCTGCACATCCGTACAGGCCACCCAT
ACATGGATGTGGTGAGGATCCAAACATGAGCACTCCTCCCCTCCTCGGGG
GCTCGTTCCTTCGCAGTAGAGCTGCTCTTCGGCTGCAGTGTGCACGCGCA
TCCGAGAGAGCTCGCTGCTGTACCCACCAGGCCCACCCGCTCTTTCCGGT
TCTCGGAACGAATAAACAAAAAAGGCACGCACGTGTGTGTGTCCCCAGCC
TCTACCGGGCGGCCACCGCCGTAAACTGCTAGCGGGTGATGATCTGATGT
ATTTGGTTGCATTGTTCGAGGTGAGGTAAAATAGTGCAGCAGCATCCCAA
CGCCCTCTCCGTGCTGCTCCGTTCGCCCCCAGTCTGATCTGAATCGACTT
CTTCGACAGCAGCACCTGATCTCACCACGTCACCTCATCAAGCAGCAAGC
AACCACTCGGAGGAACATTTTATCTTTTTGGACAAGCACCCGAGCCGTGC
TCGGCACCCGAGAGAGCAGCGGACAGGGCGTACCCAGTAGCCGTGAGCGA
CCTAGGTCTTTGGAGCAATGTCGGCGCGTACCTTTGGTTCATACTGTGCT
GGTGAGTGGAGAGATAGAGCAAACAGCACCACACAGAAGAGATGATATGT
ATGTAGCTGTGTAAGTAGCAAAGTGCTTGTAGCAGTGTATGCAAATACCG
TATATGACACAAGATAACACACCCCCTTGACCGATTTTCAAAGACCGATT
TCTCAACAGCAGGAAGACTCACACCGCCGAAAACGGCGGCGTTGGAACCG
TCTCGTTGAGAGCTTTTGGAAAATGTATCATTTCGTTTATGTATCCTCTT
CGTCGTCGAGTAATCGATCTTTGAAAATCGGGCCAGGGTGTGTGTTATCT
TGTGTCATATACGGTAGCGCAGTTGTTGCCGACATGTGTAAGAAGGGTAG
GTACCCAGGGTTGACAGTCACGTGGATCGGGTGCTTGGGAAGCGCATTGT
GATGTTGTGGTGGCTCGTGCGTGTGCGCTGTGACCGTCCGTTCTGTTTTC
GTTCGTCATATGTCTTCTTCCTCTTTATTATCTCGATGCATGCCTCTGTG
ACTGCTCCTCTTCTTCCGTTTGACCTCCTGAGAACAGGGCGAGGGCAACT
ACCCACACAGACGTCGCCATCAAGCTCCGGCCAAGCTGAGGCACCTGCTG
CATTGTACCTACAAGTGGACTCTGCGAATCAGAGAGCCTTTAGTACCCCT
GCATTGATCATTACCTCGGAGAGGCAAGTAACCAACCAAGTGCAGCCATA
TCCACGCTGGGATGGATGGGCAATGCGTAGGGCCAAAGTGAACGGTCGTT
AAGTACGATTGTACATCGTACAACGTATCTATGCATACTGCTGCTGTCAA
TGGTGGTGCCCCGCTTGATGTTCTCCTTGGGGATTAGATGGCCGTCAAGC
ACGAAGGTGTTTCTGCTGTGCATTGCGTAGTACAGTGCGTCCCGCGTTGC
GATGAAGCTGGTGGTGTTGTTTTTCTTGACTCCGCCGCCGGTCGCTGCTG
CTCATGCTACTATTTTCTGCTGCTGCCGCTCCTGCTCTTCGCTCTAAAGG
GGGTACTTTGAAAATAACGGCGTGCGACGTACTGATGACGACGTGGATGC
TCATGGAAAGCAAGAATCACAGCTGTGTGATGGGGGGTGATGGGTGATGA
TGAGGTAGGTGCGGTTGTTTCCTAACGTATTAGTCTATGTGGCCGTGGAC
AGCAGTTTCACGGGCATCCATTTTTTGTTGATGCTGTATGTCGTGAGACG
AAGGAGGTGGATGCATGAGTGTCGTGTGTAGTCCAGAGGAGGCGTTTACA
TCACCCTCTACAAGGCGATGTTCTTGTACTAGTTGCCGCTCGCCCAGGAA
CACTTTTCCATCTTAAAATGCGCCGCGAGACTTTTTGTTCTGGTACCTTG
AGGGATGGTACGAAAGTGACGGTGTTGTTGTGAAGACATGCAGCCTGTTA
ACAACATCGGCACGTTTCCTCGCTTTTCCTACTCTTGATTTCGTACTAGT
GAGCAGTGGTCGCCGTGCGTATTATGCATAGGAATTGAAAACTTGTTGCT
TCCCTTCCGCCCGGCCCGCCTACTCTCCCTTGATCACGAACATCGCGAAG
CTTTTAGGAAGTGGGTGAGAAGATATGAGGGCCAACACATCTGACAGAGA
AGGTCATGTTGGGCGAAAGACTTCAAGTTCGCGACACGGGCCGTGCACGT
GATGGAGAAGAGCCCGGGCCGTGTATACTGGTGATGCGGCTGCAACAAGG
GTCAACCAAAGCTGGCGGGGATGCGTTGGCTAATAATATGTAGAATTTGT
GGTTGGCGCGCATGAAGCGTTGCGGTGGAGTGCAAAGTATTTGTGGTAAT
AATGTTTGTTCCGCAGTGTGGTAGCATTTATTTGAGGGCAAATGCTGTCA
GGGGTTCATAGTTGAAGATCGTCTGCACGAATACCGCCCTAGAGGTGGTA
GGAAGAACTTTTGTTATCAGCGGGTGGCGGTACAATAGGGTCAGGACAAT
TTCTTCGTCGTTGATGGCTGGCTGCGTCTCGCCTGAGGTAGACCATCATG
GGTTGTTTGAACGTGAGAACAAGTATTAATAGCACTGGGTTAGAGACCCC
GTCTTGGTTTACTGGACGTTGGGTCCGTGTACAAAATAAAGTACGGTGCC
TATTGCTCCACAAAAATGAGGGGAAAAAATCAGCTGGTGGTACTGCAAGG
CACTGCTGCTGCAGTGCAGGTAACAAGACCGCGTGCGGCATTTGTTACCC
GAAAGCACCTGAGAAAAAAATATCTAAGTCTACGTAATTACAAGATAAGA
CAAACGTCTGGGATACGACATTGGTGGTGTCGGCGCGTGTTCTGTGTCAT
CACGCTCGCGGTCTCTTGTCGAGAGCGTATGCATGAAGGAGTTACTTTAG
TTCCTTATATTCCTCCAATCTGAGGTCCTCTTTCCTTGGATCCTTTCGAG
TTTGAAGGGATTGAATGATGGGATATAATATTTATTTGTTGTCTGTTGTG
TGACGGCGGGACGAAACGACGTGTGATCACGACACGAACGGACGGATGAG
GTTTTTGCTTTAGTTCCTTATATTATTATTAGGGAGAGACAATACACGAG
CAGCAGGCAAAGAAGGCCCTGCTGCAACAAACAGCAAGGGTCCACCCAAA
TCCATCACATCTGCGTAACCCCCTCGGAGATGTCGGAGATGTGCATCCTG
CCGAGTACACACACAAAGCCCCCTACTCGGTACGAGATAGGATCTACGAT
ACCTCCCGTACATATCGCCAGGAAAAAACGGCAACAAATCAAAACTCCAA
AACAAAGAATCATCCTTTCTTTGAAAAATACTCCTTAAATATCAACTTTA
CAGGAGAGACACGCCATGAAGACTTTTGAACGGAGAACTCCGGGAAAACG
CGGCAACTATTACTACTTTGGAGAAGATCGTTGCACGAAACCATGGTTCA
GCCCATTGACCAATATCAAATAAGCTTCGGAAAGCACATAATAGGCCTCA
ACCATGTCTTACCAAAATATGCCAATTCCTTCCTCCTACATATATCATAG
TCTTTTGAAATGTACGGCAACTCTCTTCACCAATTATTATACCGTTTTTC
TAACATCGAGACAACATCGATATCTTAACATCTAGCTCCCTGCGGCACTA
TTTCCCAAAACATGAAAGAAAGCTTTACAGCCCCCCCCCGCTGTATCATC
TCCCAAAAGATAAGTTCGAACATCCCCCTTGTTCGGCATCTCACAAAACA
TAATAAACAGCCCCCCCGCTGCAGTACCTTCCAAAACACAAAATGCAAGT
CACCCGGTGCCATTTCGTTTGGATCGCAAAAACTACGAATAAACAACGTG
CAGTATGCAGGAATGACACTCGATCGCAATCCTGAAAAAAAGAGAATAGT
GCAACCCCCCCCCCATGCTTTTCGGAGCAGTACCTACAAAACACAAACGC
ATGTAAGTAAGTACAACAACGACACATAAAAAAAAAAACTGCTGCATGCA
AGGACAGGATGTTTGCCGCACCCAACACGAGCACGTGCCCATCACATANN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNN

Coding sequence (CDS) from alignment at chr_00:3808176..3812684+

>Ec-00_003650.2 ID=Ec-00_003650.2|Name=Ec-00_003650.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=318bp|location=Sequence derived from alignment at chr_00:3808176..3812684+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGAAAGAAAGCTTTACAGCCCCCCCCCGCTGTATCATCTCCCAAAAGAT
AAGTTCGAACATCCCCCTTGTTCGGCATCTCACAAAACATAATAAACAGC
CCCCCCGCTGCAGTACCTTCCAAAACACAAAATGCAAGTCACCCGGTGCC
ATTTCGTTTGGATCGCAAAAACTACGAATAAACAACGTGCAGTATGCAGG
AATGACACTCGATCGCAATCCTGAAAAAAAGAGAATAGTGCAACCCCCCC
CCCATGCTTTTCGGAGCAGTACCTACAAAACACAAACGCATGTAAGTAAG
TACAACAACGACACATAA

Synonyms

The feature 'Ec-00_003650.2' has the following synonyms


Synonym
Esi0225_0050
Esi_0225_0050