Ec-00_003640.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_003640.1
Unique NameEc-00_003640.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length170
Homology
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BLAST of Ec-00_003640.1 vs. uniprot
Match: D7FXD2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXD2_ECTSI)

HSP 1 Score: 304 bits (778), Expect = 5.540e-104
Identity = 147/154 (95.45%), Postives = 150/154 (97.40%), Query Frame = 1 
Query:    1 MAPYAYAFVGDEKKAFSGGRAPTPDNNAFLAAVRFLRPGARDANSPFPADFITATTTARVNIHQDARMACAHIIEGMLDLEQEEQHPATITDLWRGVRNRITTIEAESTAMEGLWHRVFTRFIKGHQGNTRKEWSLARLVREPRALADFVAEIV 462
            MAPYAYAFVGDEKKAFSGGRAPTPDNNAFLAAVRFL PGARDANS FPADFITATTTARV+IHQDARMACAHIIEGMLDLEQEE HP TITDLWRGVRNRITTIEAESTAMEGLWHRVFTRFIKGHQGNTRKEWSLARLVREPRALADFVAE++
Sbjct:    1 MAPYAYAFVGDEKKAFSGGRAPTPDNNAFLAAVRFLWPGARDANSHFPADFITATTTARVSIHQDARMACAHIIEGMLDLEQEEHHPETITDLWRGVRNRITTIEAESTAMEGLWHRVFTRFIKGHQGNTRKEWSLARLVREPRALADFVAEVI 154
The following BLAST results are available for this feature:
BLAST of Ec-00_003640.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FXD2_ECTSI5.540e-10495.45Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:3705866..3708265 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length510
Hectar predicted targeting categoryother localisation
Gene idEc-00_003640.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_003640Ec-00_003640Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 3705866..3708265 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003640.1.4Ec-00_003640.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3705866..3705919 -
Ec-00_003640.1.3Ec-00_003640.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3706642..3706770 -
Ec-00_003640.1.2Ec-00_003640.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3707294..3707475 -
Ec-00_003640.1.1Ec-00_003640.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3708121..3708265 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003640.1CDS:Ec-00_003640.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 3705866..3705919 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003640.1Ec-00_003640.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 3705866..3708265 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_003640.1 ID=Ec-00_003640.1|Name=Ec-00_003640.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=170bp
MAPYAYAFVGDEKKAFSGGRAPTPDNNAFLAAVRFLRPGARDANSPFPAD
FITATTTARVNIHQDARMACAHIIEGMLDLEQEEQHPATITDLWRGVRNR
ITTIEAESTAMEGLWHRVFTRFIKGHQGNTRKEWSLARLVREPRALADFV
AEIVKFLCPYAVTSGATKR*
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spliced messenger RNA

>Ec-00_003640.1 ID=Ec-00_003640.1|Name=Ec-00_003640.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=510bp|location=Sequence derived from alignment at chr_00:3705866..3708265- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCCCTACGCATATGCCTTCGTCGGGGACGAAAAGAAGGCGTTCTC
GGGCGGACGAGCTCCCACCCCCGACAACAACGCGTTCCTGGCAGCCGTCC
GATTCTTGCGGCCGGGTGCCAGGGACGCGAACTCACCTTTCCCAGCTGAT
TTCATCACCGCCACCACCACCGCGCGGGTTAACATCCACCAAGACGCCCG
GATGGCTTGCGCGCACATCATTGAGGGGATGCTCGACCTGGAGCAAGAGG
AGCAACACCCGGCGACAATCACCGACCTCTGGCGCGGGGTCCGGAACCGC
ATCACTACAATCGAGGCGGAGTCGACGGCCATGGAGGGCCTATGGCACCG
GGTCTTCACCCGCTTTATCAAAGGGCACCAAGGCAACACGCGCAAGGAGT
GGAGCCTCGCACGCCTGGTGCGAGAACCGCGAGCGCTCGCGGACTTCGTC
GCGGAGATCGTCAAGTTCCTGTGCCCGTACGCCGTCACCTCAGGTGCAAC
AAAACGTTAG
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protein sequence of Ec-00_003640.1

>Ec-00_003640.1 ID=Ec-00_003640.1|Name=Ec-00_003640.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=170bp
MAPYAYAFVGDEKKAFSGGRAPTPDNNAFLAAVRFLRPGARDANSPFPAD
FITATTTARVNIHQDARMACAHIIEGMLDLEQEEQHPATITDLWRGVRNR
ITTIEAESTAMEGLWHRVFTRFIKGHQGNTRKEWSLARLVREPRALADFV
AEIVKFLCPYAVTSGATKR*
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mRNA from alignment at chr_00:3705866..3708265-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_003640.1 ID=Ec-00_003640.1|Name=Ec-00_003640.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2400bp|location=Sequence derived from alignment at chr_00:3705866..3708265- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGCGCCCTACGCATATGCCTTCGTCGGGGACGAAAAGAAGGCGTTCTC
GGGCGGACGAGCTCCCACCCCCGACAACAACGCGTTCCTGGCAGCCGTCC
GATTCTTGCGGCCGGGTGCCAGGGACGCGAACTCACCTTTCCCAGGTTCG
GGTGGATTGATGACATGTTGTTTCTTCTAGAGGTGAACAAAGTCACGCGT
AGAGAGGTACTTACCGCACAGGCACACACCTGCCCTCTATTTACCGGGTG
GTTTATGCCGTATCTGGTTGACGTTCTTCGTCGCCAACCAGTCTTGTGCA
TGTAGATATCTACAGGCACACGCGCTCGCTCATGACATCGAGACCAATGG
CAAGCACGGGCGTGTACCCACGCGCCTAGATACATCCATCCATATTCAGG
GTTCTGGATGATTCGTCAGCCATATGCGTAGAAAAGACAACCACAAGACG
TGCTCCATAAACAATTTTCGGACTTGCACTTGGTGCAAGTGGTAGTGTCA
GACGTAGTGAAACGCAGTCAAATTCCGTTGTTGTCCCGCCAGTTGTGTGC
ATTCGAAAGAACGCCATCAGTCGTGTTTTTGCGAAATCATGTTACGCCTA
CTATATACAGTCGTGTTTGTCGTGCTGCATTTATAGAAGTCCCTCGAAAC
CTCTTGGTGAATGGTCGCATGTCCTGCAACACGGTGACGTGCAGATATCG
TCCGGATGAGGACTTGCACCCATTTTTTCTCGAACACATGTGACTCATTG
CCTTTCTTGTCTCCGTTTACACGCGTTGATGTCGCCCCAGCTGATTTCAT
CACCGCCACCACCACCGCGCGGGTTAACATCCACCAAGACGCCCGGATGG
CTTGCGCGCACATCATTGAGGGGATGCTCGACCTGGAGCAAGAGGAGCAA
CACCCGGCGACAATCACCGACCTCTGGCGCGGGGTCCGGAACCGCATCAC
TACAATCGAGGCGGAGTCGACGGTAACCGTTGACGTCCAATATACCCTGG
TCGCCGTTTGCGGAAACGTAGCTCACATTGTTCAAATCCGGCGTTCACGT
GCTATTTAGGTAGCACGCAGCGTGTGTGCGATGCACGCTTTCGCGAGTCT
CTCAGGGTACTGCCCCCGAGCCTCTTAGTTGCAGCGGAGCGGTTGTGGGG
GCGGCGGGGATGATCAATGCACGGACAGTGTACTGTTCTAGGACATTTCA
CAATCCCGGGCGTTGCTTGTAAACGTACCCGACAGAGGACCTGTGCACCC
CATTGCATGTTTTCTGTGACGCGGATATTTTGTGCTGGCTACCCTCCGTC
GGTGGCGGCGACCAACGTTTATCGACGATCCTACAAGGCCGTTCCCACGG
CGAAAAATAACACATAGAGCTGTGTTATGTCCCCAGTCGACTGCGCTCTG
TTATTCCTACAACAATTTGGTGCGTTCCCTCGCTTCTTGAAGCCGTATAT
ATGCAAAATTGTGTGAGTGACTACACGTTTGCGTTTGTATTGCAGGCCAT
GGAGGGCCTATGGCACCGGGTCTTCACCCGCTTTATCAAAGGGCACCAAG
GCAACACGCGCAAGGAGTGGAGCCTCGCACGCCTGGTGCGAGAACCGCGA
GCGCTCGCGGACTTCGTCGCGGAGGTGATTACCATGTAAAATCGCGTCGA
ACAGGATGCGTCCCATCGACGCGTTTAGACAACAGTTCGATTGCTGTATG
ATACCGCAATAATAGTGTCCGCGTACCACGTGCGAAGTACTTATACGTAG
CTTGGCTCACTTGCTGACCCACTTGTGTGCTCACCTTTTCTGCATGTAGT
TTGCGACTCCTATGCTCCTTCACGCGGTCCGCGACATGGAGTTTCTGCGT
GTGTCCGAGATCGGCACGCACGAGTCGGCCACGTCCAGGGCCCTAAGGCA
GATGCGGTCTTGGTCGAGGTTAATAAACGGTGGATTCCCCGACCGTCAAG
CTAGGGCTTTCCAGGAGAGGTGAACATTTTTGCTGATGTTGTGTTGCGAT
GAAAGAATAAATACTCTGGCTGGTTTGTCTTGTTTTAGTCCTCCCACCAT
AAAGAATTAGCTGCCTGCTCCCGTGCGTACATGTAGTAAACGCACCGATA
CTTTAGGCCAACCTTATTTCTAGCTTGACCAAGCCCAGGGCATTGTCCCA
TATCTTCGTGATCACACTCCTTTGTGGCTTTCAGACGTTGCTCGACAGCA
TCTCGTCTGTCGCCCTATCCGACGACCCGTGTACTGTGTTTTACCTTGCC
AGCATGTGGCGCCAGCTGTTCCATTATCTCACGGGACCCCGCCGCCACGG
GCACGCCCTCCGGACGCTCTCCCACTGGGATTACGACAACCCCAAGATCG
TCAAGTTCCTGTGCCCGTACGCCGTCACCTCAGGTGCAACAAAACGTTAG
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Coding sequence (CDS) from alignment at chr_00:3705866..3708265-

>Ec-00_003640.1 ID=Ec-00_003640.1|Name=Ec-00_003640.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=510bp|location=Sequence derived from alignment at chr_00:3705866..3708265- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGCGCCCTACGCATATGCCTTCGTCGGGGACGAAAAGAAGGCGTTCTC
GGGCGGACGAGCTCCCACCCCCGACAACAACGCGTTCCTGGCAGCCGTCC
GATTCTTGCGGCCGGGTGCCAGGGACGCGAACTCACCTTTCCCAGCTGAT
TTCATCACCGCCACCACCACCGCGCGGGTTAACATCCACCAAGACGCCCG
GATGGCTTGCGCGCACATCATTGAGGGGATGCTCGACCTGGAGCAAGAGG
AGCAACACCCGGCGACAATCACCGACCTCTGGCGCGGGGTCCGGAACCGC
ATCACTACAATCGAGGCGGAGTCGACGGCCATGGAGGGCCTATGGCACCG
GGTCTTCACCCGCTTTATCAAAGGGCACCAAGGCAACACGCGCAAGGAGT
GGAGCCTCGCACGCCTGGTGCGAGAACCGCGAGCGCTCGCGGACTTCGTC
GCGGAGATCGTCAAGTTCCTGTGCCCGTACGCCGTCACCTCAGGTGCAAC
AAAACGTTAG
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Synonyms
The feature 'Ec-00_003640.1' has the following synonyms
Synonym
Esi0225_0033
Esi_0225_0033