Ec-00_003550.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_003550.1
Unique NameEc-00_003550.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length145
Homology
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BLAST of Ec-00_003550.1 vs. uniprot
Match: D7FRR4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR4_ECTSI)

HSP 1 Score: 129 bits (324), Expect = 1.130e-35
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 1 
Query:    1 MRLVLPTSSGLKNVQEFDSLAAGGSGGPTPEATLAKRKKDIKSKKSKEEKQRARDSERXXXXAKKAEAKAXEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGREARPAGGGDGNILG 432
            MRLVLPTSSGLKNVQEFDSLAAGGSGGPTPEATLAKRKKDIKSKKSKEEKQRARDSERXXXXAKKAEAKAXEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGREARPAGGGDGNILG
Sbjct:    1 MRLVLPTSSGLKNVQEFDSLAAGGSGGPTPEATLAKRKKDIKSKKSKEEKQRARDSERXXXXAKKAEAKAXEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGREARPAGGGDGNILG 144
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BLAST of Ec-00_003550.1 vs. uniprot
Match: A0A6H5JP83_9PHAE (EAF domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP83_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 3.890e-19
Identity = 53/59 (89.83%), Postives = 53/59 (89.83%), Query Frame = 1 
Query:   28 GLKNVQEFDSLAAGGSGGPTPEATLAKRKKDIKSKKSKEEKQRARDSERXXXXAKKAEA 204
            GLKNVQEFD LAAGGSGGPTPEATLAKRKKDIKSKK KEEKQRARDSER    AKKAEA
Sbjct: 1024 GLKNVQEFDGLAAGGSGGPTPEATLAKRKKDIKSKKIKEEKQRARDSEREAKAAKKAEA 1082
The following BLAST results are available for this feature:
BLAST of Ec-00_003550.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FRR4_ECTSI1.130e-35100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JP83_9PHAE3.890e-1989.83EAF domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:3528571..3530575 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length435
Hectar predicted targeting categoryother localisation
Gene idEc-00_003550.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_003550Ec-00_003550Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 3528571..3533314 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003550.1.1Ec-00_003550.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3528571..3528597 +
Ec-00_003550.1.2Ec-00_003550.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3529402..3529581 +
Ec-00_003550.1.3Ec-00_003550.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3530348..3530575 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003550.1CDS:Ec-00_003550.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 3528571..3528597 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003550.1Ec-00_003550.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 3528571..3530575 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_003550.1 ID=Ec-00_003550.1|Name=Ec-00_003550.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=145bp
MRLVLPTSSGLKNVQEFDSLAAGGSGGPTPEATLAKRKKDIKSKKSKEEK
QRARDSEREAKAAKKAEAKAAEMAAKAAEKATAKAAKAEEKAAAKAAKAA
EKAAARAARAAEKAAARASAKESKGTARGREARPAGGGDGNILG*
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spliced messenger RNA

>Ec-00_003550.1 ID=Ec-00_003550.1|Name=Ec-00_003550.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=435bp|location=Sequence derived from alignment at chr_00:3528571..3530575+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGATTGGTTTTGCCAACCAGCTCGGGGCTTAAGAACGTCCAGGAATT
CGACAGCCTGGCGGCGGGAGGGTCGGGAGGGCCTACGCCGGAGGCCACCT
TGGCGAAGAGGAAGAAGGACATCAAGTCCAAGAAGAGCAAGGAGGAGAAG
CAGAGGGCGAGGGATAGCGAGCGAGAAGCCAAGGCCGCGAAGAAGGCGGA
AGCAAAGGCGGCAGAAATGGCGGCGAAAGCGGCAGAAAAAGCGACAGCGA
AAGCCGCGAAGGCGGAAGAAAAGGCCGCGGCAAAAGCCGCAAAGGCGGCA
GAAAAAGCGGCGGCAAGAGCCGCCAGGGCTGCGGAAAAGGCCGCAGCGAG
AGCGTCAGCCAAGGAGTCGAAGGGCACAGCCAGAGGAAGAGAGGCAAGGC
CAGCGGGGGGAGGTGATGGGAACATCTTGGGGTAG
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protein sequence of Ec-00_003550.1

>Ec-00_003550.1 ID=Ec-00_003550.1|Name=Ec-00_003550.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=145bp
MRLVLPTSSGLKNVQEFDSLAAGGSGGPTPEATLAKRKKDIKSKKSKEEK
QRARDSEREAKAAKKAEAKAAEMAAKAAEKATAKAAKAEEKAAAKAAKAA
EKAAARAARAAEKAAARASAKESKGTARGREARPAGGGDGNILG*
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mRNA from alignment at chr_00:3528571..3530575+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_003550.1 ID=Ec-00_003550.1|Name=Ec-00_003550.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2005bp|location=Sequence derived from alignment at chr_00:3528571..3530575+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCGATTGGTTTTGCCAACCAGCTCGGTAAGTCCTACTGGGACGACACG
GTTAGCGCTCAACAAGTCGCAGTTTTTTTTCCCTTCGGAATGAAAGTACT
GGTGCTAGATACGGTTGTGGCACCACCGCTGGGGCGGGACTGCTGCACCC
GGTTAGCGGGGGCGAGGAGAGGGGGGCGAAATCATGGTTTCTGGGTGGTA
CGGGGCACGGCCTACAAGTGCTCATCCTCGCAGACGTTTCGTTTTGTGGG
AAAAGGTTTCTCACATGCATACAGGCGTTTTTTTGTCGTCTCGGTGAGCG
CCCGATGAACTCAAGCGCGCGGACCCTCGTTGCACGCGCGATACATGCGT
GTTTTGAGACGCAGCAGTCCAAGCGTGCCCGATTGTATTGTTTGCCGTTT
TTCTGCTGGGATTTTCGGGTGCTCTCTCGAGAGACACACGTGTGCTCACA
CGTTGGGGCGACATGTTCTTCATTCCCCCGTGCTTGTAATTTCGTTTCCC
CATTCGTTGAGTGTGTCCTTTCTTTTTTTTTTGCTTAGCTGTCCTTCCAC
GTACAAGCAGAGGGGATCAAACACCGCCACAGGTAGTCGTTCGTTTGGAT
TTCTGCCTTCGTTTTTCACGTCTTGAGCTTTCCCTCGAGAACAAAGGCGT
TTCTGGCATCGCAATGTGTCGTATCGCAACGTAACCGCTTAGCTCTTACA
TGGTCTTTTTTTTTTCCTTCTTTTCGTTCTGCATGTCTTTTGTCGTCCTG
CATTCGTTTTTTTTTAGTGTGGGTGTTTTTTTTTCGTTCAATATTCAATG
CCGCGTTTGTTTGATCGCCTTCGAAACACAGGGGCTTAAGAACGTCCAGG
AATTCGACAGCCTGGCGGCGGGAGGGTCGGGAGGGCCTACGCCGGAGGCC
ACCTTGGCGAAGAGGAAGAAGGACATCAAGTCCAAGAAGAGCAAGGAGGA
GAAGCAGAGGGCGAGGGATAGCGAGCGAGAAGCCAAGGCCGCGAAGAAGG
CGGAAGCAAAGGTGTGCGTGCGATTGCAGGGGAACCACGGAGAGAGACAG
AGAGGGGGGGAGGGGGGGAGGGAGAGACAGACAGACAGACAGAGAGAGAG
AGACAGACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGGGAGGGAGACGGGGCGTTGAAGAGATGGATGGAGAGATAGATAGGCAG
ACAAAGCGATGGGGAGATCAAATAATTGACAGACACGCTTGTAGATACAG
AATTGGACGTGGGCAGATAGCATGGATGAAAATTACAGCGGCAGGTGGTG
CGTGTGTAGCGATACGGTGTATTACTCTTATGCTGGAAACACACACACTC
TCGCGCGTATGTATGCAGTGCTGTCGTTTTGGAAACCGCTGGCGAACGTC
TTGAGAGTAGTAGGGGGGGGAAATCATTCTGGGTCATTGTCCTTCACGCC
ACCGGAACCAGCGCCTCCCCCCCCCCGGAAGTGCTGCTCCCCCGTCCCCT
TCCGAAGCCCCTTTCAGTAGTCGTGTCTGCCGAACGTGAGATGTTTGGTT
AGCCGGGATGCCGTAGCATATCTGGTTGGCACGGTAACCGCTAGGATCAT
AGCCAGGTCATCCTTGTGAAACTCAGCCCGGGCCGGCGAAAACCCGGCAT
TATCGCTCCATCCCGTTATTTTTTTGACATGCGAGGCCAATGACCTAAGG
ACTTGAGCATATGTTTTCATTAGTGCACCCTACTGCCGCATCCTGCGTGC
CTGTTCCCTCGTGTACTGCTTACGCAGGCGGCAGAAATGGCGGCGAAAGC
GGCAGAAAAAGCGACAGCGAAAGCCGCGAAGGCGGAAGAAAAGGCCGCGG
CAAAAGCCGCAAAGGCGGCAGAAAAAGCGGCGGCAAGAGCCGCCAGGGCT
GCGGAAAAGGCCGCAGCGAGAGCGTCAGCCAAGGAGTCGAAGGGCACAGC
CAGAGGAAGAGAGGCAAGGCCAGCGGGGGGAGGTGATGGGAACATCTTGG
GGTAG
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Coding sequence (CDS) from alignment at chr_00:3528571..3530575+

>Ec-00_003550.1 ID=Ec-00_003550.1|Name=Ec-00_003550.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=435bp|location=Sequence derived from alignment at chr_00:3528571..3530575+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCGATTGGTTTTGCCAACCAGCTCGGGGCTTAAGAACGTCCAGGAATT
CGACAGCCTGGCGGCGGGAGGGTCGGGAGGGCCTACGCCGGAGGCCACCT
TGGCGAAGAGGAAGAAGGACATCAAGTCCAAGAAGAGCAAGGAGGAGAAG
CAGAGGGCGAGGGATAGCGAGCGAGAAGCCAAGGCCGCGAAGAAGGCGGA
AGCAAAGGCGGCAGAAATGGCGGCGAAAGCGGCAGAAAAAGCGACAGCGA
AAGCCGCGAAGGCGGAAGAAAAGGCCGCGGCAAAAGCCGCAAAGGCGGCA
GAAAAAGCGGCGGCAAGAGCCGCCAGGGCTGCGGAAAAGGCCGCAGCGAG
AGCGTCAGCCAAGGAGTCGAAGGGCACAGCCAGAGGAAGAGAGGCAAGGC
CAGCGGGGGGAGGTGATGGGAACATCTTGGGGTAG
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Synonyms
The feature 'Ec-00_003550.1' has the following synonyms
Synonym
Esi0217_0042
Esi_0217_0042