Ec-00_003520.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR
Overview
Homology
BLAST of Ec-00_003520.1 vs. uniprot
Match: D7G6T5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6T5_ECTSI) HSP 1 Score: 385 bits (989), Expect = 3.650e-128 Identity = 219/315 (69.52%), Postives = 236/315 (74.92%), Query Frame = 3 Query: 312 MQELYMVVFLTRYSDLLYVFSSWYNSVMKIAHIFLTGLTIGMLKSRPSLKASYDASLDRFRLWMHGIVPSIVLAVIVQLWQNLLGKHYYLPGVLRFAWNFSEVLEPLAVVPQLLVFRGSTDAGRLGWTYVTLMGAYRALYILNWVYLSYNDYAYRHHPLVYAAGIVQTGMYLMFLVDRRVRVSPHLPPAETGGVDIMEPTSSARERLLPDQGTDTETTRTREHCLDGEVYGMKVSGAADSASVASRRGQHQQGDETVSKIESVLNRERGQGQSFRASDNTAAEDTGSVETRTGAAXXXXXXXXXEMTRS-GVYLV 1253 MQELY+VVFLTRY DL + F S YNSVMK+ I LT LTIGM K RPSLKASYDASL Y ++ F W FSEVLEPLA+VPQLLVFRGSTDAGRL WTYVTLMGAYRA YILNWVY S+ +Y Y HHPLVYAAGI+QTGMYLMFLVDR VRVSPHLPP ETG VDIMEPTSSARERLLPDQ TDTE +R RE LDGEV+G K+SG AD+AS SRRG+HQ+GDETVSKIESVL+RERGQG+S AS AAEDT SVETRT XXXXXXX EMT S GVYLV Sbjct: 1 MQELYLVVFLTRYLDLFFRFISVYNSVMKVVFIILTALTIGMFKYRPSLKASYDASLP-----------------------------YSQTSLVNFLWTFSEVLEPLALVPQLLVFRGSTDAGRLAWTYVTLMGAYRAFYILNWVYRSHYEYGYIHHPLVYAAGIIQTGMYLMFLVDRGVRVSPHLPPDETGDVDIMEPTSSARERLLPDQDTDTEPSRNRERGLDGEVHGRKLSGVADAASATSRRGEHQRGDETVSKIESVLSRERGQGRSVHASGKNAAEDTSSVETRTAXXXXXXXXXGGEMTGSQGVYLV 286
BLAST of Ec-00_003520.1 vs. uniprot
Match: D7FRR1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR1_ECTSI) HSP 1 Score: 362 bits (928), Expect = 3.150e-120 Identity = 188/217 (86.64%), Postives = 188/217 (86.64%), Query Frame = 3 Query: 204 MMNIFEFLGDMSHLAATVLLPYKLHTSRSAAGVSLKMQELYMVVFLTRYSDLLYVFSSWYNSVMKIAHIFLTGLTIGMLKSRPSLKASYDASLDRFRLWMHGIVPSIVLAVIVQLWQNLLGKHYYLPGVLRFAWNFSEVLEPLAVVPQLLVFRGSTDAGRLGWTYVTLMGAYRALYILNWVYLSYNDYAYRHHPLVYAAGIVQTGMYLMFLVDRRVR 854 MMNIFEFLGDMSHLAATVLLPYKLHTSRSAAGVSLKMQELYMVVFLTRYSDLLYVFSSWYNSVMKIAHIFLTGLTIGMLKSRPSLKASYDASL HYYLPGVLRFAWNFSEVLEPLAVVPQLLVFRGSTDAGRLGWTYVTLMGAYRALYILNWVYLSYNDYAYRHHPLVYAAGIVQTGMYLMFLVDRRVR Sbjct: 1 MMNIFEFLGDMSHLAATVLLPYKLHTSRSAAGVSLKMQELYMVVFLTRYSDLLYVFSSWYNSVMKIAHIFLTGLTIGMLKSRPSLKASYDASL-----------------------------HYYLPGVLRFAWNFSEVLEPLAVVPQLLVFRGSTDAGRLGWTYVTLMGAYRALYILNWVYLSYNDYAYRHHPLVYAAGIVQTGMYLMFLVDRRVR 188
BLAST of Ec-00_003520.1 vs. uniprot
Match: D8LJM2_ECTSI (PGPS/D6 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJM2_ECTSI) HSP 1 Score: 197 bits (502), Expect = 3.030e-56 Identity = 100/209 (47.85%), Postives = 136/209 (65.07%), Query Frame = 3 Query: 207 MNIFEFLGDMSHLAATVLLPYKLHTSRSAAGVSLKMQELYMVVFLTRYSDLLYVFSSWYNSVMKIAHIFLTGLTIGMLKSRPSLKASYDASLDRFRLWMHGIVPSIVLAVIVQLWQNLLGKHYYLPGVLRFAWNFSEVLEPLAVVPQLLVFRGSTDAGRLGWTYVTLMGAYRALYILNWVYLSYNDYAYRHHPLVYAAGIVQTGMYLMF 833 MNIF GDMSH A+ ++L KL S+SAAG+SLK QEL++VVF+TRY DL + F SWYNS+MK+ +I LT L I M++ +KA+YD S D F W + P L +++ W + ++ F W FSEVLEP A+VPQL+V + + L YV L+GAYR+LYI+NWVY ++ + Y+HH LVY AG+VQT +Y F Sbjct: 1 MNIFRLAGDMSHTASILMLLLKLRASKSAAGISLKTQELFLVVFVTRYVDLFFRFISWYNSIMKVLYITLTSLIIYMIREHIPIKATYDKSQDSFLHWQFAVAPCAALGLLIHSWSWWTVSMPF-SSLINFFWTFSEVLEPFAIVPQLMVLQRYREVENLTGHYVFLLGAYRSLYIVNWVYRAHYEAGYQHHVLVYIAGLVQTLLYADF 208
BLAST of Ec-00_003520.1 vs. uniprot
Match: A0A835Z6E1_9STRA (ER lumen protein retaining receptor-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6E1_9STRA) HSP 1 Score: 179 bits (453), Expect = 3.460e-49 Identity = 94/209 (44.98%), Postives = 132/209 (63.16%), Query Frame = 3 Query: 207 MNIFEFLGDMSHLAATVLLPYKLHTSRSAAGVSLKMQELYMVVFLTRYSDLLYVFSSWYNSVMKIAHIFLTGLTIGMLKSRPSLKASYDASLDRFRLWMHGIVPSIVLAVIVQLWQNLLGKHYYLPGVLRFAWNFSEVLEPLAVVPQLLVFRGSTDAGRLGWTYVTLMGAYRALYILNWVYLSYNDYAYRHHPLVYAAGIVQTGMYLMF 833 MNIF +GD+ HLA+ +LL KL S++A+G+SLK QEL++ VF+ RY DL F S YNSVMK+ +I LT L I M++++ ++ +YDAS D F + + P LA + L Q V WNFS LE +A+VPQL+V + + L Y+ +GAYRALYILNW+Y S+++ Y+HH +VY AGIVQT +Y+ F Sbjct: 1 MNIFRLVGDLCHLASILLLLLKLRASKNASGISLKTQELFLAVFVCRYLDLFTTFYSVYNSVMKVLYIALTALIIHMMRAQSPIRGTYDASQDTFLHVKYAVAPCAALAALTMLVQGF--------DVRDLFWNFSIYLEAIAIVPQLIVLQRYREVENLTGHYIFFLGAYRALYILNWIYRSFHERGYKHHYVVYFAGIVQTALYVDF 201
BLAST of Ec-00_003520.1 vs. uniprot
Match: A0A7S2XZQ8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZQ8_9STRA) HSP 1 Score: 173 bits (439), Expect = 3.830e-47 Identity = 93/209 (44.50%), Postives = 127/209 (60.77%), Query Frame = 3 Query: 207 MNIFEFLGDMSHLAATVLLPYKLHTSRSAAGVSLKMQELYMVVFLTRYSDLLYVFSSWYNSVMKIAHIFLTGLTIGMLKSRPSLKASYDASLDRFRLWMHGIVPSIVLAVIVQLWQNLLGKHYYLPGVLRFAWNFSEVLEPLAVVPQLLVFRGSTDAGRLGWTYVTLMGAYRALYILNWVYLSYNDYAYRHHPLVYAAGIVQTGMYLMF 833 MN+F GD+SH A+ ++L +L TS+SA G+SLK QEL+++VFL RY DL F S YNSVMK+ +I T I M++ P+ KA+YD D F +VP +VLA+I L Q W FS LE A++PQL+V + + L YV L+G YRALYI+NWVY +Y++ YRH + YAAG+VQT +Y+ F Sbjct: 3 MNLFRLAGDLSHAASIIILLQRLRTSKSALGISLKTQELFLIVFLCRYLDLFTTFISLYNSVMKVLYISSTSYIIYMMRMLPTYKATYDKDQDSFLHIYFAVVPCLVLALITNLVQGF--------DFTEMLWIFSIYLEATAIIPQLVVLQRYREVENLTGNYVFLLGCYRALYIMNWVYRAYHEAHYRHSYVAYAAGVVQTALYVDF 203
BLAST of Ec-00_003520.1 vs. uniprot
Match: A0A6V1VUP9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1VUP9_HETAK) HSP 1 Score: 169 bits (428), Expect = 1.490e-45 Identity = 85/209 (40.67%), Postives = 130/209 (62.20%), Query Frame = 3 Query: 207 MNIFEFLGDMSHLAATVLLPYKLHTSRSAAGVSLKMQELYMVVFLTRYSDLLYVFSSWYNSVMKIAHIFLTGLTIGMLKSRPSLKASYDASLDRFRLWMHGIVPSIVLAVIVQLWQNLLGKHYYLPGVLRFAWNFSEVLEPLAVVPQLLVFRGSTDAGRLGWTYVTLMGAYRALYILNWVYLSYNDYAYRHHPLVYAAGIVQTGMYLMF 833 MNI+ GD+SH A+ +L ++LH S+SA G+SLK QEL++VVF+ RY DL F S YNS MKI ++ T I +++ +P+ +A+YDAS D F W + PS+VL +I+ +L+ + + + W FS VLE A++PQL+V + + L Y+ +G YRALY+ NWVY +Y++ Y+H + Y G+ QT +Y+ F Sbjct: 1 MNIYRLAGDLSHAASIWILLWRLHKSKSALGISLKTQELFLVVFMARYLDLFTHFISLYNSFMKIMYLTSTSAIIYLMRMKPTYRATYDASQDSFLHWQFAVAPSVVLGLII----SLISAGGF--SFMEWMWTFSIVLEATAIIPQLIVLQRYREVENLTGNYIFALGLYRALYLCNWVYRAYHEPNYQHSYVAYLCGVAQTALYIDF 203
BLAST of Ec-00_003520.1 vs. uniprot
Match: W7T564_9STRA (ER lumen protein-retaining receptor n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T564_9STRA) HSP 1 Score: 169 bits (428), Expect = 1.790e-45 Identity = 92/209 (44.02%), Postives = 128/209 (61.24%), Query Frame = 3 Query: 207 MNIFEFLGDMSHLAATVLLPYKLHTSRSAAGVSLKMQELYMVVFLTRYSDLLYVFSSWYNSVMKIAHIFLTGLTIGMLKSRPSLKASYDASLDRFRLWMHGIVPSIVLAVIVQLWQNLLGKHYYLPGVLRFAWNFSEVLEPLAVVPQLLVFRGSTDAGRLGWTYVTLMGAYRALYILNWVYLSYNDYAYRHHPLVYAAGIVQTGMYLMF 833 MNIF F GDMSH+ + ++L +LH +++A GVSLK QEL+++VF TRY DLL F S YNS MKI +I T I M++ R +++YD S D FRL ++P +VLA+I L + G + W FS LE +A++PQL+V + + L Y+ +GAYR LYILNW+Y +Y + Y H +VYA G VQT +Y F Sbjct: 3 MNIFRFAGDMSHVFSIIILLLRLHVAKNANGVSLKTQELFLIVFCTRYLDLLIRFISLYNSAMKILYIGSTAAIIHMIRYREPYRSTYDRSQDSFRLEF-ALIPCLVLAMITSLIRGF--------GFIELFWTFSIYLEAVAILPQLIVLQRYSVVENLTGHYIFFLGAYRGLYILNWIYRAYTEKHYHHDYVVYACGFVQTALYADF 202
BLAST of Ec-00_003520.1 vs. uniprot
Match: B8C2C4_THAPS (ER lumen protein-retaining receptor n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C2C4_THAPS) HSP 1 Score: 166 bits (421), Expect = 1.880e-44 Identity = 85/209 (40.67%), Postives = 127/209 (60.77%), Query Frame = 3 Query: 207 MNIFEFLGDMSHLAATVLLPYKLHTSRSAAGVSLKMQELYMVVFLTRYSDLLYVFSSWYNSVMKIAHIFLTGLTIGMLKSRPSLKASYDASLDRFRLWMHGIVPSIVLAVIVQLWQNLLGKHYYLPGVLRFAWNFSEVLEPLAVVPQLLVFRGSTDAGRLGWTYVTLMGAYRALYILNWVYLSYNDYAYRHHPLVYAAGIVQTGMYLMF 833 MNIF GDMSH+ + ++L +L +R+A G+SL+ EL+++VFLTRY+DL + S YNSVMK+ +I T + ++ + + ++YD + D FR W + P VLA + L G + + V W FS LE +A++PQL+V + D L Y+ MG YRALYI+NWV+ +YN+ YRHH +VY G++QT +Y F Sbjct: 1 MNIFRLCGDMSHVFSIIVLLLRLRVARNAQGISLRTHELFLLVFLTRYTDLFTTYYSLYNSVMKVLYIASTASIVYTIRLQEPICSTYDKAQDTFRHWEFAVAPCAVLATLTHLISG--GGLFSVVDVQELLWTFSIYLEAVAILPQLIVLQRYRDVENLTGNYIFFMGLYRALYIVNWVFRAYNEPGYRHHYVVYFCGVLQTLLYADF 207
BLAST of Ec-00_003520.1 vs. uniprot
Match: F0YI66_AURAN (Uncharacterized protein n=2 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YI66_AURAN) HSP 1 Score: 165 bits (418), Expect = 4.140e-44 Identity = 93/209 (44.50%), Postives = 127/209 (60.77%), Query Frame = 3 Query: 207 MNIFEFLGDMSHLAATVLLPYKLHTSRSAAGVSLKMQELYMVVFLTRYSDLLYVFSSWYNSVMKIAHIFLTGLTIGMLKSRPSLKASYDASLDRFRLWMHGIVPSIVLAVIVQLWQNLLGKHYYLPGVLRFAWNFSEVLEPLAVVPQLLVFRGSTDAGRLGWTYVTLMGAYRALYILNWVYLSYNDYAYRHHPLVYAAGIVQTGMYLMF 833 MN+F F GDMSH+ + ++L +L S+SA G+SLK QEL+++VF+TRY DL F S YNS MK+A+I T I M++ + K+ YD S D F + + P +LA L+ L+ + VL W FS LE LA+VPQL V + + L YV +GAYR LYILNWVY SY + YRH+ LVY +G +QT +Y+ F Sbjct: 1 MNLFRFAGDMSHVVSIIVLILRLRVSKSAVGISLKTQELFLIVFMTRYLDLFTTFYSMYNSFMKVAYITATASIIYMIRFKEPYKSKYDKSQDSFLHFKFAVAPCAMLA----LFSCLIKRELNPVDVL---WTFSIFLEALAIVPQLFVLQRYREVENLTGHYVFFLGAYRFLYILNWVYRSYYEPFYRHNWLVYISGAIQTALYVDF 202
BLAST of Ec-00_003520.1 vs. uniprot
Match: A0A7S3ZPQ8_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZPQ8_9STRA) HSP 1 Score: 167 bits (422), Expect = 8.680e-44 Identity = 94/209 (44.98%), Postives = 125/209 (59.81%), Query Frame = 3 Query: 207 MNIFEFLGDMSHLAATVLLPYKLHTSRSAAGVSLKMQELYMVVFLTRYSDLLYVFSSWYNSVMKIAHIFLTGLTIGMLKSRPSLKASYDASLDRFRLWMHGIVPSIVLAVIVQLWQNLLGKHYYLPGVLRFAWNFSEVLEPLAVVPQLLVFRGSTDAGRLGWTYVTLMGAYRALYILNWVYLSYNDYAYRHHPLVYAAGIVQTGMYLMF 833 MNIF F GDMSH+ + ++L +L +S+SA G+SLK QEL+++VF+TRY DL F S YNS MK+A+I T I M++ + K+ YDAS D F + P LA+ L + L + W FS LE LA+VPQL V + + L YV +GAYR LYILNWVY SY + YRH+ LVY +G VQT +Y+ F Sbjct: 74 MNIFRFAGDMSHVVSILVLLLRLRSSKSAVGISLKTQELFLIVFVTRYLDLFTTFYSLYNSFMKVAYIASTTYIIWMIRFQEPYKSKYDASQDSFLHIKFAVAPCAGLALFACLVKGELSP-------IDILWTFSIFLEALAIVPQLFVLQRYREVENLTGHYVFFLGAYRGLYILNWVYRSYYEQFYRHNWLVYVSGAVQTALYVDF 275 The following BLAST results are available for this feature:
BLAST of Ec-00_003520.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Ec-00_003520.1 ID=Ec-00_003520.1|Name=Ec-00_003520.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=368bpback to top spliced messenger RNA >Ec-00_003520.1 ID=Ec-00_003520.1|Name=Ec-00_003520.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1678bp|location=Sequence derived from alignment at chr_00:3500129..3507562- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon. CAGTCGCTTACCACCAAGCGTGGCTGAGGACAACTGACGGCTGTGGCGCTback to top protein sequence of Ec-00_003520.1 >Ec-00_003520.1 ID=Ec-00_003520.1|Name=Ec-00_003520.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=368bp MVCVETAHGLLCESTDTMMNIFEFLGDMSHLAATVLLPYKLHTSRSAAGVback to top mRNA from alignment at chr_00:3500129..3507562- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Ec-00_003520.1 ID=Ec-00_003520.1|Name=Ec-00_003520.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=7434bp|location=Sequence derived from alignment at chr_00:3500129..3507562- (Ectocarpus species7 Ec32 male_plus_femaleSDR)back to top Coding sequence (CDS) from alignment at chr_00:3500129..3507562- >Ec-00_003520.1 ID=Ec-00_003520.1|Name=Ec-00_003520.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=1104bp|location=Sequence derived from alignment at chr_00:3500129..3507562- (Ectocarpus species7 Ec32 male_plus_femaleSDR)back to top Synonyms
The feature 'Ec-00_003520.1' has the following synonyms
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