Ec-00_003490.2 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ec-00_003490.2
Unique Name	Ec-00_003490.2
Type	mRNA
Organism	Ectocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length	154

Homology

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BLAST of Ec-00_003490.2 vs. uniprot
Match: D7FRQ9_ECTSI (Dynein light intermediate chain n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRQ9_ECTSI)

HSP 1 Score: 423 bits (1088), Expect = 5.730e-138
Identity = 334/478 (69.87%), Postives = 349/478 (73.01%), Query Frame = 2

Query:   92 MAVAKQQKHAPAPASASTVGATTAAATANLWETMLRDAMRRSRLPSSTLVFVGPKGCGKSSLLDTFLEGQGSASTNNPSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPIAGQAFHPVLSYAYLDAADPAEQGAERDESPPRVSVWSCSGLEFEPLLETVLRPEELPNMAVVVAVDLSRPWEVMDSVENGRQRWK----ST*PRCSCSSPSELRTTCVAPSRRD*EGKQRRSAEGAAGWEAAAATTLLAGAWATEFWREILACPWWWSGAKRTHCRARRSSSSSDCTLSSRASADSA*KRSGLGLHIGKGQRELQPAAPISAQLRLP*RVFVLRGRP----------TSDAAFIPAGWDSKRLIDGLLSPDKTPWGPNATFAEVVVPPPGAVGRGASGSGMGGWMDGDSGGXXXXXXXXXXXXXXXXXXXXETVESEEAWLSSLGKQVAGTDSKSHGPA 1483
            MAVAKQQKHAPAPASASTVGATTAAATANLWETMLRDAMRRSRLPSSTLVFVGPKGCGKSSLLDTFLEGQGSASTNNPSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPIAGQAFHPVLSYAYLDAADPAEQGAERDESPPRVSVWSCSGLEFEPLLETVLRPEELPNMAVVVAVDLSRPWEVMDSVE      +    S   + S  +  +LR+      R    GK +                              L  P    G K    ++                     ++S     +  G   +  +A  S    L  R  +    P          TSDAAFIPAGWDSKRLIDGLLSPDKTPWGPNATFAEVVVPPPGAVGRGASGSGMGGWMDGDSGGXXXXXXXXXXXXXXXXXXXXETVESEEAWLSSLGKQVAGTDSKS  P+
Sbjct:    1 MAVAKQQKHAPAPASASTVGATTAAATANLWETMLRDAMRRSRLPSSTLVFVGPKGCGKSSLLDTFLEGQGSASTNNPSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPIAGQAFHPVLSYAYLDAADPAEQGAERDESPPRVSVWSCSGLEFEPLLETVLRPEELPNMAVVVAVDLSRPWEVMDSVEKWTTAMEKHVTSLLLQLSVGAQDDLRSAVKERLR----GKAKEIGGXXXXXXXXXXXXXXXXGLGDGVLERNLGVPMVVVGCKADSLQSETFEQQQRLHFI---------QQSLRRFCLKYGAALVYTSAKDSVNCSLLHRYLLSCVYPDAFSFSEEGQTSDAAFIPAGWDSKRLIDGLLSPDKTPWGPNATFAEVVVPPPGAVGRGASGSGMGGWMDGDSGGXXXXXXXXXXXXXXXXXXXXETVESEEAWLSSLGKQVAGTDSKSRWPS 465

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BLAST of Ec-00_003490.2 vs. uniprot
Match: A0A835Z2Q1_9STRA (Dynein light intermediate chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2Q1_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 1.390e-9
Identity = 100/400 (25.00%), Postives = 142/400 (35.50%), Query Frame = 2

Query:  146 VGATTAAATANLWETMLRDAMRRSRLPSSTLVFVGPKGCGKSSLLDTFLEGQGSASTNNPSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPIAGQAFHPVLSYAYLDAADPAEQ---GAERDESPPRVSVWSCSGLEFEPLLETVLRPEE------------LPNMAVVVAVDLSRPWEVMDSVENGRQRWKST*PRCSCSSPSELRTTCVAPSRRD*EGKQRRSAEGAAGWEAAAATTLLAGAWATEFWREILACPWWWSGAKRTHCRARRSSSSSDCTLSSRASADSA*KRSGLGLHIGKGQRELQPAAPISAQLRLP*RVFVLRGRPTSDAAFIPAGWDSKRLIDGLLSPDKTPWGPNATFAEVVVPPPGAV--GRGA 1294
            V A+T+      W+ +LR+A    R P S ++ VGP+G GK++L++      G+A     +                                                      FHPVL+Y Y +A D A Q   G+   +SPPRVSVWSCS   F  +L  V    +             P +A+V AVDL+RPWE + + E     W +           + R   V        G +R S  G                      RE+           R  C  R ++       +S  + D+      L LH       L P+A   A                S A +IP GWDS  L+D L+      W  +  +A+V+ PP GA   GRGA
Sbjct:    4 VEASTSDTAGGSWDALLREAATAERPPDSVIICVGPRGSGKTALVERLT---GAAPRKQDATGEEPPPD----------------------------------------------FHPVLAYDYFEARDAAAQSSSGSAFSDSPPRVSVWSCSDARFVDILTAVTASTQHAPPPPAAAGVAAPALALV-AVDLTRPWEAVPAAE----AWLAALEGVR----GDARAVVVGCKLDAAGGAERESGGGMERQR-----------------RELFV-----QRRLRRLCLERGAA----LVYASARTGDNCAALQRLVLH------RLYPSAFSCAP-----------DAQVSGAVYIPWGWDSLELVDALMGGGVAGWSDDLPYAKVLPPPQGAREGGRGA 302

[Close]

BLAST of Ec-00_003490.2 vs. uniprot
Match: A0A7S3XSQ8_HETAK (Dynein light intermediate chain (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XSQ8_HETAK)

HSP 1 Score: 70.9 bits (172), Expect = 1.660e-9
Identity = 37/105 (35.24%), Postives = 57/105 (54.29%), Query Frame = 1

Query:  712 KWTTAMEKHVTSLLLQLSVGAQDDLRSAVKERLRGKAKEIGGXXXXXXXXXXXXXXXXGLGDGVLERNLGVPMVVVGCKADSLQSETFEQQQRLHFIQQSLRRFC 1026
            KW   +E+ +  +  QLSVG QD+L     + +  + +                          ++RNLGVP++V+GCK D++++ETFE QQ+L FIQQ LR+FC
Sbjct:  151 KWVKVLERAIVKVRSQLSVGDQDELMQIQNDYIASQTEVENSSK--------------------IQRNLGVPLMVIGCKLDAIEAETFEHQQKLQFIQQHLRKFC 235

[Close]

BLAST of Ec-00_003490.2 vs. uniprot
Match: A0A7S2V3Z7_9STRA (Dynein light intermediate chain n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V3Z7_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 6.760e-8
Identity = 31/42 (73.81%), Postives = 35/42 (83.33%), Query Frame = 1

Query:  904 LERNLGVPMVVVGCKADSLQSETFEQQQRLHFIQQSLRRFCL 1029
            L  NLGVP++V+GCKAD L+SETFEQQQRL FIQQ LR  CL
Sbjct:   47 LTNNLGVPILVIGCKADKLESETFEQQQRLQFIQQHLRNCCL 88

The following BLAST results are available for this feature:

BLAST of Ec-00_003490.2 vs. uniprot

BLAST of Ec-00_003490.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4


Match Name	E-value	Identity	Description
D7FRQ9_ECTSI	5.730e-138	69.87	Dynein light intermediate chain n=2 Tax=Ectocarpus...	[more]
A0A835Z2Q1_9STRA	1.390e-9	25.00	Dynein light intermediate chain n=1 Tax=Tribonema ...	[more]
A0A7S3XSQ8_HETAK	1.660e-9	35.24	Dynein light intermediate chain (Fragment) n=1 Tax...	[more]
A0A7S2V3Z7_9STRA	6.760e-8	73.81	Dynein light intermediate chain n=1 Tax=Fibrocapsa...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr_00	contig	chr_00:3473783..3482831 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR	2016-10-08

Properties


Property Name	Value
Length	2035
Hectar predicted targeting category	other localisation
Gene id	Ec-00_003490.2

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ec-00_003490	Ec-00_003490	Ectocarpus species7 Ec32 male_plus_femaleSDR	gene	chr_00 3473781..3482831 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_003490.2	Ec-00_003490.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	polypeptide	chr_00 3473880..3480057 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_003490.2.6	Ec-00_003490.2.6	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 3473783..3474202 -
Ec-00_003490.2.5	Ec-00_003490.2.5	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 3479407..3479496 -
Ec-00_003490.2.4	Ec-00_003490.2.4	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 3480009..3480383 -
Ec-00_003490.2.3	Ec-00_003490.2.3	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 3480784..3480899 -
Ec-00_003490.2.2	Ec-00_003490.2.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 3481433..3481751 -
Ec-00_003490.2.1	Ec-00_003490.2.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 3482117..3482831 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_003490	3UTR:Ec-00_003490.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	three_prime_UTR	chr_00 3473783..3473879 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_003490.2	CDS:Ec-00_003490.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	CDS	chr_00 3473880..3474202 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_003490	5UTR:Ec-00_003490.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	five_prime_UTR	chr_00 3480058..3480383 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at chr_00:3473783..3482831-
coding sequence from alignment at chr_00:3473783..3482831-

mRNA sequence

>Ec-00_003490.2 ID=Ec-00_003490.2|Name=Ec-00_003490.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=154bp
MAQRDSGGSQARQGVQVAPESTGQRAGPTELLRQLAGNRERGRVATGPTE
EEVLTPEPCALRCSSRVGCLVREARSTSPRSMGWRACCCWFAIDVRIHSA
CCYRCLLNGFLHRTFFSSCKKQRLGLFRVERQDGGDTLRSAFFVFWSCEE
SLC*

spliced messenger RNA

>Ec-00_003490.2 ID=Ec-00_003490.2|Name=Ec-00_003490.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2035bp|location=Sequence derived from alignment at chr_00:3473783..3482831- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
TGCAATTATCGGAGATTCGCCCTTGGCCTGCGCGATCAGAGCCGGCATTG
GACACAGATGTACACTACTGCTGCGTGTGTCGCGTTTAACCATGGCCGTT
GCAAAGCAGCAGAAGCACGCGCCAGCGCCAGCGTCAGCATCAACAGTGGG
CGCTACTACCGCGGCGGCCACGGCCAACCTCTGGGAGACCATGCTGCGAG
ACGCGATGCGGAGAAGCCGGCTTCCTTCCAGCACGCTCGTCTTCGTCGGC
CCCAAGGGCTGCGGCAAGTCGTCTCTCCTCGACACCTTCCTCGAGGGGCA
GGGATCCGCCTCTACTAACAACCCTTCCGGCAGCGGTGCAGCGGCTGCCT
CAGCCGTCGTCGCGCCGACCCCGGACAAGAAGGGTCCCGAGGGCGGGGCG
GGCGGCGGCGGCGGGGGTGCGGCATCGGCAGGAGCTTCGGCGAGCGGCGG
TGGCGGCGGCGGCGGCGGCGACCCCATCGCGGGGCAGGCCTTCCACCCCG
TCCTGTCGTACGCCTACCTGGACGCCGCGGACCCTGCGGAGCAGGGAGCG
GAGCGGGATGAGTCGCCGCCCCGCGTGAGCGTTTGGTCGTGTAGCGGGCT
GGAGTTCGAGCCTTTGCTGGAGACGGTGCTTCGACCGGAGGAGCTCCCGA
ATATGGCCGTGGTAGTTGCCGTTGACCTGTCTCGGCCCTGGGAGGTCATG
GATTCTGTGGAAAAGTGGACGACAGCGATGGAAAAGCACGTGACCTCGCT
GCTCTTGCAGCTCTCCGTCGGAGCTCAGGACGACTTGCGTAGCGCCGTCA
AGGAGAGACTGAGAGGGAAAGCAAAGGAGATCGGCGGAGGGGGCGGCAGG
ATGGGAGGCAGCAGCGGCAACGACCCTCCTGGCGGGGGCCTGGGCGACGG
AGTTCTGGAGAGAAATCTTGGCGTGCCCATGGTGGTGGTCGGGTGCAAAG
CGGACTCATTGCAGAGCGAGACGTTCGAGCAGCAGCAGCGATTGCACTTT
ATCCAGCAGAGCCTCCGCAGATTCTGCCTAAAATACGGAGCGGCCTTGGT
CTACACATCGGCAAAGGACAGCGTGAACTGCAGCCTGCTGCACCGATATC
TGCTCAGCTGCGTCTACCCTGACGCGTTTTCGTTCTCCGAGGAAGGCCAG
ACGTCCGACGCAGCCTTCATCCCTGCAGGCTGGGACTCGAAACGCTTGAT
CGACGGCCTCCTTTCCCCGGACAAGACCCCGTGGGGACCCAACGCAACAT
TCGCGGAGGTAGTGGTCCCTCCTCCCGGTGCCGTCGGCCGGGGGGCTAGC
GGCAGCGGCATGGGGGGGTGGATGGACGGCGACTCCGGTGGGGACGGCGG
CGGCCTTGCGGCCGGCGGGGGAGAGGCGGGGGGCGGCGGCGGCGGAGGGG
GGGAGACCGTGGAGTCGGAGGAGGCTTGGTTGTCGAGCCTCGGGAAGCAG
GTGGCCGGAACGGATAGCAAGTCGCGATGGCCCAGCGCGATAGCGGCGGC
AGCCAAGCACGCCAAGGCGTCCAAGTCGCCCCGGAAAGCACCGGCCAACG
CGCCGGACCCACGGAGCTTCTTCGCCAACTTGCTGGCAACCGGGAGCGGG
GCCGGGTCGCCACCGGGCCCACAGAGGAAGAAGTCCTGACGCCCGAGCCT
TGCGCGCTGCGGTGCTCTTCTCGCGTTGGCTGCTTGGTGCGGGAAGCGAG
GTCGACTTCTCCTCGCTCTATGGGCTGGCGAGCGTGCTGCTGTTGGTTCG
CGATTGACGTTCGCATACACAGTGCTTGCTGCTATCGTTGTCTGCTGAAC
GGTTTTCTCCATCGGACTTTTTTCTCGTCTTGTAAAAAACAACGCCTTGG
CTTGTTTAGGGTAGAACGACAAGACGGGGGAGACACCCTACGCTCTGCTT
TTTTTGTTTTTTGGTCGTGTGAGGAAAGCCTCTGTTGAGTGCGCTAGGTA
ACCGTTTGCTTCTTCGGTGGCGAGCGCGGATTGATCATTCCCGTGTTTGA
CGCAGTCTGGTGGTATGAAGAATCGAAGGTGCGGG

protein sequence of Ec-00_003490.2

>Ec-00_003490.2 ID=Ec-00_003490.2|Name=Ec-00_003490.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=154bp
MAQRDSGGSQARQGVQVAPESTGQRAGPTELLRQLAGNRERGRVATGPTE
EEVLTPEPCALRCSSRVGCLVREARSTSPRSMGWRACCCWFAIDVRIHSA
CCYRCLLNGFLHRTFFSSCKKQRLGLFRVERQDGGDTLRSAFFVFWSCEE
SLC*

mRNA from alignment at chr_00:3473783..3482831-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ec-00_003490.2 ID=Ec-00_003490.2|Name=Ec-00_003490.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=9049bp|location=Sequence derived from alignment at chr_00:3473783..3482831- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
TGCAATTATCGGAGATTCGCCCTTGGCCTGCGCGATCAGAGCCGGCATTG
GACACAGATGTACACTACTGCTGCGTGTGTCGCGTTTAACCATGGCCGTT
GCAAAGCAGCAGAAGCACGCGCCAGCGCCAGCGTCAGCATCAACAGTGGG
CGCTACTACCGCGGCGGCCACGGCCAACCTCTGGGAGACCATGCTGCGAG
ACGCGATGCGGAGAAGCCGGCTTCCTTCCAGCACGCTCGTCTTCGTCGGC
CCCAAGGGCTGCGGCAAGTCGTCTCTCCTCGACACCTTCCTCGAGGGGCA
GGGATCCGCCTCTACTAACAACCCTTCCGGCAGCGGTGCAGCGGCTGCCT
CAGCCGTCGTCGCGCCGACCCCGGACAAGAAGGGTCCCGAGGGCGGGGCG
GGCGGCGGCGGCGGGGGTGCGGCATCGGCAGGAGCTTCGGCGAGCGGCGG
TGGCGGCGGCGGCGGCGGCGACCCCATCGCGGGGCAGGCCTTCCACCCCG
TCCTGTCGTACGCCTACCTGGACGCCGCGGACCCTGCGGAGCAGGGAGCG
GAGCGGGATGAGTCGCCGCCCCGCGTGAGCGTTTGGTCGTGTAGCGGGCT
GGAGTTCGAGCCTTTGCTGGAGACGGTGCTTCGACCGGAGGAGCTCCCGA
ATATGGCCGTGGTAGTTGCCGTTGACCTGTCTCGGCCCTGGGAGGTCATG
GATTCTGTGGAAAAGGTTTGTGCTTCAGCTGCTACGTTGCGGGACTGGCT
CTTGCTGCTCGCGGTGTGGGTTTGAAGTCGTGTTAGATTGAAATGCAATT
TCCATTTCGCCGTTTGAAATTTATCTTCGATTTTGAACTCTTCCGACAGC
ATGTTGTTGTTAGCCCAGTTGTTTATTACTGTAATCTTTCATCTTTATTG
TGCACACAGCAGTAGCTACCCATCCAACACAAGCAGTCGTTCATTTTTGC
GTGTGGTAGCACCTGTTTTGCACACTACATCAGCGAGGCGCGACAACCGC
TGCAATCTTCGCAACAAAGCGCCTGCCAACACCCTCCCCCCACATTACCG
TGGCTCACCCGTGCAACTTTTCCACTACAGTGGACGACAGCGATGGAAAA
GCACGTGACCTCGCTGCTCTTGCAGCTCTCCGTCGGAGCTCAGGACGACT
TGCGTAGCGCCGTCAAGGAGAGACTGAGAGGGAAAGCAAAGGAGATCGGC
GGAGGGGGCGGCAGGATGGGAGGCAGCAGCGGCAACGACCCTCCTGGCGG
GGGCCTGGGCGACGGAGTTCTGGAGAGAAATCTTGGCGTGCCCATGGTGG
TGGTCGGGTGCAAAGCGGACTCATTGCAGAGCGAGACGTTCGAGCAGCAG
CAGCGATTGCACTTTATCCAGCAGAGCCTCCGCAGATTCTGCCTAAAATG
TGAGCCTAGGTGTAAAAACGAGCGGTTAGAACCCTTTTCAGCTTTTTGCG
CTGGTTCGGGTCGTGCTGTGTTAATAAAAATTGGTCGAAGTTGGCCCATA
TTGGCCCATATTTGTTCAAATTTGACCCGCCAATTCTCGGCGACACCATC
TCGGTTTTGTTGTTGTTTTTTTGCATGAGCACCTCCTTGACCATATCTTC
TGATCCGGCCTAACTACAGCATTGTACACCCCTCCCTGCAGAACATATTT
ATGATATGCGTGTCATAACCGACTTTTCATATGTGTCATCTTTGCCACGA
TACATGTTGGTTTGGCATACCCAGTGGTACATACGTGTTTTCATCCCACT
CTCGAGCGCTTGAAGAAGATACTACCACCGCCTCGTGTACTTTTCTTCCG
ACCTGTGGGAAGAATAGTGGGGCCATAGGGACCCGTTTGTCGCCACCACA
GGCTCACCATCCCACGTTTCGCGGATATAAAACGGCATGTTTTAGTTGTT
CGCCCGCTCCTTCGTATCTGACTCTTGTGCAGACGGAGCGGCCTTGGTCT
ACACATCGGCAAAGGACAGCGTGAACTGCAGCCTGCTGCACCGATATCTG
CTCAGCTGCGTCTACCCTGACGCGTTTTCGTTCTCCGAGGAAGGCCAGGT
GCGAAGAGTACGGCGAGCGCTGCTGTGCTTCCGCAATCACCAGGTCGCGG
GGAAAATGTTTGGGTGTTTTCGGACAACACTCTCATCTCATCCGCGATTT
TGATATTCTGTTACGTTCGTGAAGGCATATTTTTTGTTTTTTGCATAGCC
ATGTACAGTAGCTGCAACAGGCGCGTGGGCTCTCTCTCGGGCAGGCTTCC
GGCTTTGTCCGGCCAGAATGTGCTTCTAGGGTCTTGATCAGTGGTGTGGT
CGCCGAAGTCCCCTCTTCGGTGTAACAGACGCCGCCGCGCTCACACACAC
ACGCCCCCATCCATGCCCGTCCCATCCTTCACTTCACACCACTGCGCACC
GCACGTATGCGCCGACCTGTCCAATCGAATGAACGACACACCGCGCAGAC
GTCCGACGCAGCCTTCATCCCTGCAGGCTGGGACTCGAAACGCTTGATCG
ACGGCCTCCTTTCCCCGGACAAGACCCCGTGGGGACCCAACGCAACATTC
GCGGAGGTAGTGGTCCCTCCTCCCGGTGCCGTCGGCCGGGGGGCTAGCGG
CAGCGGCATGGGGGGGTGGATGGACGGCGACTCCGGTGGGGACGGCGGCG
GCCTTGCGGCCGGCGGGGGAGAGGCGGGGGGCGGCGGCGGCGGAGGGGGG
GAGACCGTGGAGTCGGAGGAGGCTTGGTTGTCGAGCCTCGGGAAGCAGGT
GGCCGGAACGGATAGCAAGTCGCGATGGCCCAGCGCGATAGCGGCGGCAG
CCAAGCACGCCAAGGCGTCCAAGGTAAAGGAGAGGGTGAGGGGGGCGGGT
GGACGAGGCGCATTGGGAGGGTGGACAAGCTGGTGTACTGGGCAGCTCTT
GTCTACATACGCACGTGCGCACGGCGCTCGAGCGCTCCTGCCGTGTGTGC
GTTTGTTTTGTCATGTCGTTTCACGAGTAGATCCTCTTTCGACGTTCAGG
CGTACATCGGTGTGTAGTGATGCTGCGCTGTTACTCGTAGCTCCGCAGCG
CCCCAGCGCACCGTACCGAGCGTCCGTGACGTAGGCTGCTCCCCGCTCGG
CCCATGCGGCACTTGGCCGATCCCGAAACAGGGCGCCTCTTGCGACCGGC
ATATTTCGCAAAGTGACTGCTGTGTACGTTGTTCAAGGTTTGCGGTCTTC
CTTGTCCCAAGGCTTCATCTCTTTGAGATCTTCAGCGAACCATTTCTCGC
GCCCCCTGTCCATTTCCGTGGTGTTGTCCCCTTACGCTGTGGGAAACCCG
ATTCGTTCCATCCCGTGGGTGGTTTGTTTTTCCAGTCGCCCCGGAAAGCA
CCGGCCAACGCGCCGGACCCACGGAGCTTCTTCGCCAACTTGCTGGCAAC
CGGGAGCGGGGCCGGGTCGCCACCGGTGAGTCCGCTTCGGTGTTCTTCTG
AGTGAGTGGTGCCTGCGTGAGGTCTGCGCCGCGGCTGGCTGCGGGTGTTT
GCTCGTGAATTGGTTCTGGTAAACAACTTTCCCTTCGTTTTGCGGGGACG
GGGATTCGAGCGAGGGGTGTCCGTGGCGACGACTTTCTCGCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTTTCTCTCTTTCTCTCTCTCTCTCTCTCC
CCTGCTGGGTGCCACAAACATGTACCTGTGCGTGGGCTAGTCCCACTTTG
TGTCTGCAGCGCACCCTCTATCCGCCAGCCTGGAGAGGCGCTGCACATGC
AAGTTGGGCACCGTCAGAGACTGCTATGTGCCGCTTTTTGTTGACGTCAG
TGCGGAGGTTGCTCCTTGTGGACCCAACCAAATCGAAAACAAAATGCATA
CTTGCGATACGAACGCTTGTCTACGCGTGCGCAACGTTTGCCTGGCCATT
TTGTAGCGGTATCACACGCACACACTTGCCGGGACCTGAAGACTGACACC
GCTTTTTTTGGGAGCATAAAGTTATGAGAAAAGTTGAAGTTTTTTGGCAA
CTCTTGGTCGGGAACTATTGTCGAAAACAATTTTATTGCACGCTAACTTG
GAGCGAAGGAAGGTTTCTGGTGAAAGGCGGAGGCGATCATTTTTTGTGTA
TTGATGAACGGCGAGAAGCAGGCACACTCCTTCATACCACACCGTGAAAC
CGGCCAGAGCGTGCAATAAAAGATTGGAAAACGAGTTAAACCTGGCGTTG
TGCCTTCCAATCAAACCCAGGAGGCCCTCCATCATGCTCACATCCAACCC
AAATTATTGTCTTAGACTCTACAAATTCGTATTCTACACAGCTGCGGCCA
TCGCAGGCAATTCCAACTCGTCGTTTATTATTGTGATAGCAACTCGACGA
GTATCGTCTCGTGGCCTGTCTGAAGCTTTCCAGTGCTTTAGCGGTTAACA
AAGTCGAGGGCGCACAACGCGCGACACGGTCGCTCACCGAGCACGACAAA
GAAAGCGGCACACAGAGTAGATGACATATGTAAGATATCACACCCCCTCA
ACACTTGTTAATTTTCAAACCTCGATTACTCCACAGCTGAAAGCGTGGCC
GGGCGGCGTTGGAACCGATAGCTTTCCGAAGACAAACGTATCGTTTGACA
TCCATCCTCCTCGTCGTCGTGGACTATCATTATTGATGAAGGGGTTGTGA
TATATAATGTCCCCTACTCCAGGTACATGCCATCCATGTGATGCACTCCT
ACTCCAGGTACTTACATAGTTGAATTGAAACCTCTCATAACCCATCCATG
AAGAAGTCGTTTCTAAAGCAAAAGGAAGCATAGAATATTAGAGGCGACCT
CACGCGCACCCGAAAAAACCGTCAGTCTTCGACCGGCACTTCTCACGACG
CCCATCCATGCGTATGCACTTTTTTATGGCGAGCGACTCCATGCTTTCTT
TCAAGAATCCCGCTAATCATCTCGTTGATCTGTTTCTTTCGTTTACAACA
TGTACTGTAGTACGCATGATCACGCTCGAATGAAAAGGAGACCACCAGAA
CGCCCTCTCCGCACGCCGGGAAAGAATCCGGGACTAAATGAATGCGGACC
CCAAGAAGATGCAATTTTCACATTTGGCTTCCTCTCCGTAACGAAAGAGT
CGGACGGGAGAGAGAGAAAAAAGTAGAGGCGTTGTACGCGTACCCCGTCA
TGGACATATCACAAGAGTTCGTATTGTGGTGGTGGCATGAACCTCTCTCT
GCACGATCAGGTCAGAAGGCCACCAGTCCCCGGGGCTCTTATGTTACACC
CACCCATGGACGTAGCAGTAGTAGCGCATGTCCTGTAGTAGACCACTACT
GCTGAACGTATTGGAGACCGCGAATCGTACCGACAAACAGGTGGGTTGTG
GGTGGGCGGGGACCCTAAGAAACAGTCAGACACAGCCAGTTTACATCCTC
ACAGTTTATTACAAACAAGAACGAAGGGCGATAACAAAAGAGAGACCACC
AGCGATAGGAAACAAATAAGTAGATGAGAGCACAGTGAAGACACAAGTGA
AAGACACAAGGCGTCCTTGCCTCTCTGACCCACCGGAAGCTTTCCGTGTA
CCGCAGCAAACAGCAGGGGCAGCACCCACTACCTCACATGCAGTAGCCGG
GTACATGGACTGACTGGTACGTATAAAAGTTTAGTCTCTTTCTCGGCAAG
AACAAAAGCGCCCGGGCGAACTTGAACGTGTAGTCACAAGAAGAAAGAAC
ATCACGATGACGTACCTCATTCTGCTTGCCGTGGGAGATGCGCATCGTTA
CGCGAGGAAGCATAGAATATCCTGCCGTAGACCCTATTCCTCAAGCTCAA
CCACAGCTAGACTATACCCGATACATTGTAGTATCATATCCAGCTGTTTG
ATTTCTTAGTGGCGAAGCGGACCCTCTTTTTTTTATGTCTCTCTAACTGC
TGTTCGCGGATGGTGACATGGCGACACAGACAGACAAATTCTAGGCTTTG
ACGTCGGTCTTTTCCGCCGCACGAGGTGGAAGCTACTCAAAATCGGGGAG
GGGTCGTGATTTGCAATTCCCTAAGGAACCGTACTTGAGGCGCCATGAGA
TTTATTTGCACTGCTGTCGCCGAGGTTAACGAATAGTCGGCAGGGAAACA
CAAAAAACAAAATCTTCGGCGGACCGGACCCTCTTTTTTCAACTGGCAAA
CTGTTGTTTGGATGGCGAGACAATTTCCGGTCTTCTTGTCCGTCACAGGA
GGCGGAAGCTGATGCTCAAACTCGGGGAGGGGTCATGGTTTGCGGTTCCC
TACCGAACCATACTCACTCGGGGCACCACGTCATGGACATGGCAAGAAAA
ACATCCCCCCAACGCAAACTGCTGAAATTAATGGGTGGGTGGGTGTGGGG
GACCCTAAAACAATGAACCAGTCGCGGTTCGCGTTATTCTGGGGGCCCCA
CCGGCGAAAAAACCCCGTCGCCACTCTGAACCGGTAGCAGCTGTCACACA
CAAGGCACTGACACTGCATGCAGCGAACATTAGGGGCCATGCCCATTGCT
TGACGGAAATAGGCGGCGCCCATCGCCTCACAAGCAGCAGCCGGGTACAC
GGGGAGCCAGCCTCCTACTCCGCAAGAAGAAAAACGATTGCCGTTCGTTG
ACGTTCGATGTTGTTGGGACCCTAACGGCGAAATGCGACAGAGAGAGGTA
GACCAATGGAAGAGAGACTCGAGAAGACAAGGCATGAACTCTCGAGAAGA
CACTCACTCTCATCCCTCTGGCACACGCAGGCTTAAACACATGTAACGAA
CGGCGACAGCCGATGTGCGCTCAGCAACAACAAACACAATAAAAGAAAAT
AGTCGTCGTTTCCGAACTGTGGAGACTTTGTCTTTTTTCTGGTACAGTAC
GGGCGCGCAGTTAAGAAAAAATCTGCTAAGAAAAATAGGCTCAACTTTTT
TTTCGAAAAATAAGAAAAAAGTGCTAAGAAACACAGCTCAATCTCGGCCA
CAAGACAAGAAACATCCCAATAAGAAACATGATGGCGCGATACCCGCAAG
ATATAAGAAACAAGGGGTAACTGGAGGAGCATGCCCAATAAGAAACGTCC
CACTGCTGCTCCTTCCGTGTTCCCACTCCCCTACCTGGCTGAAGAGTGCA
TTTTTTTGGTAGGGGGGAGAGAGGGTGATTATTTTGCACACCAATGGCCA
CACCGAGCTTTCTTTCTGGTTAAGTGGCATGATGATCAATTGTTGGTTGT
GTTGTATTATTTAGCCAATCGAAAATCTACGAAATATCAGCATTGGGACG
TTCCAAAGGAATGAGAAATGCCTTTTAAGAAAACGGACGACTTCGGCTGG
TCCGTGGACCCAAAATAAGGGATTGAGGCTCGACCCGAATTTGACGTTTC
TTATCTGCGGGCCCGTATTGTATGAAGTGGCCACAAAGAAGAACACGACT
ATCTGTGTAGACTAGAAGTACAACGGACGAACTATTATCTCAATTCGCTT
GCCGTGGCGATAGATGCGCACCGCTACCGCTACACGGACGAGCACACTGT
TGTCAAACTTGACAACGATAACCTTACGACCAGTGCACCACATTTCCGAG
CATTTCCAGTAGAAACCTCTGCGTACAGCAGCAGCCGCATTTTCCGAACT
GTGGAGACTTTCTCTATTCTTGTGGTATGAAGTGACAGCATGGAAGAACA
CGGCTATCTGTGTAACTAGAAGCACGGCGGACGAACTATTGTCTCAATGC
GCTTGCCGTCGCGATAGATGCGCTCTGCTACCGCTACACGAACGAGCAGA
CTGTTGTCAATCCTGACTACGATAACCCTGCGACCATTGCAGCACATTCC
GAGCATAACAGCAGCAACCGCGGCAGCAGCCGCCGCATGTGCACAACGGT
CACTCAAGACCAAACGCAAAAAAAAAAAAATGTGGCGCGCAGCACGCAGG
ACCCTCTTTCGCTGTTCAACCGGCCGTTTCCATGGCGAAACAGGCAAGGA
ACAGTCAAGGCCAACTCTTGCCGGCCACAGGAGGCGGAAGCTGCTCAAAC
TCGGGGACGGCTCATGATTTGCGATTCCACACCGAACCGTACTCGAGGCG
CCACGAGATTTGCACTGTAGCTCGAGATCAGCATTATAGACTGGGTCGGG
CAAGGGGTGGGGGATGCGAATGACAGTTCCACCCACCCACGGATATCGAA
CGATGAGACTGAAGCTAAAGCTTCAGCATTCTGACTTGGCCAATCATCTA
TCACGTGGACCGTGGGTGTGTGTGTGGCGGGAGAGGGCCTACGTGTGTAG
TAGGGGCAGGTGCTTGACGTGGATTGGCGGAAGTCTCGCCGCGAAACTGT
TGTTCGACACTTTTGTAGCGAGAAAAAATTGCAACCTGTTGCTCCAGATC
GCGCGATCATTGTCAAAAGCAAAATTTTCCATACTTTAGGCGCAACCTTT
TGCTCCCATGAATAGCGTACATGAGAAAAGTTGCGAGAAAAGTTTGCGAA
CTTTAGGTTTTCTCGCCGCTTTCTGCTCCCATAAAAAAGGCGGTGTGGGT
AGTCTGTGCTCCGTCTCACCAGTCTCGTCCCTCCTTGTTGTCCCCAGACC
AACCAGCCTACTAACTAGCCCCGCCCGTGTCAACTCCCTCGTCCAACTCA
AACCGATGCCTTTGTTTTGTCGCCTAAAGGGCCCACAGAGGAAGAAGTCC
TGACGCCCGAGCCTTGCGCGCTGCGGTGCTCTTCTCGCGTTGGCTGCTTG
GTGCGGGAAGCGAGGTCGACTTCTCCTCGCTCTATGGGCTGGCGAGCGTG
CTGCTGTTGGTTCGCGATTGACGTTCGCATACACAGTGCTTGCTGCTATC
GTTGTCTGCTGAACGGTTTTCTCCATCGGACTTTTTTCTCGTCTTGTAAA
AAACAACGCCTTGGCTTGTTTAGGGTAGAACGACAAGACGGGGGAGACAC
CCTACGCTCTGCTTTTTTTGTTTTTTGGTCGTGTGAGGAAAGCCTCTGTT
GAGTGCGCTAGGTAACCGTTTGCTTCTTCGGTGGCGAGCGCGGATTGATC
ATTCCCGTGTTTGACGCAGTCTGGTGGTATGAAGAATCGAAGGTGCGGG

Coding sequence (CDS) from alignment at chr_00:3473783..3482831-

>Ec-00_003490.2 ID=Ec-00_003490.2|Name=Ec-00_003490.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=462bp|location=Sequence derived from alignment at chr_00:3473783..3482831- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGCCCAGCGCGATAGCGGCGGCAGCCAAGCACGCCAAGGCGTCCAAGT
CGCCCCGGAAAGCACCGGCCAACGCGCCGGACCCACGGAGCTTCTTCGCC
AACTTGCTGGCAACCGGGAGCGGGGCCGGGTCGCCACCGGGCCCACAGAG
GAAGAAGTCCTGACGCCCGAGCCTTGCGCGCTGCGGTGCTCTTCTCGCGT
TGGCTGCTTGGTGCGGGAAGCGAGGTCGACTTCTCCTCGCTCTATGGGCT
GGCGAGCGTGCTGCTGTTGGTTCGCGATTGACGTTCGCATACACAGTGCT
TGCTGCTATCGTTGTCTGCTGAACGGTTTTCTCCATCGGACTTTTTTCTC
GTCTTGTAAAAAACAACGCCTTGGCTTGTTTAGGGTAGAACGACAAGACG
GGGGAGACACCCTACGCTCTGCTTTTTTTGTTTTTTGGTCGTGTGAGGAA
AGCCTCTGTTGA

Synonyms

The feature 'Ec-00_003490.2' has the following synonyms


Synonym
Esi0217_0032
Esi_0217_0032
D1LIC