Ec-00_003450.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_003450.1
Unique NameEc-00_003450.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length38
Homology
The following BLAST results are available for this feature:
BLAST of Ec-00_003450.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:3440555..3441446 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length114
Hectar predicted targeting categoryno signal peptide or anchor
Gene idEc-00_003450.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_003450Ec-00_003450Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 3440555..3441446 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003450.1.2Ec-00_003450.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3440555..3440663 -
Ec-00_003450.1.1Ec-00_003450.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3441442..3441446 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003450.1CDS:Ec-00_003450.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 3440555..3440663 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003450.1Ec-00_003450.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 3440555..3441446 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_003450.1 ID=Ec-00_003450.1|Name=Ec-00_003450.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=38bp
MRQPVAHQTDRRELVGPPRLGLGTTPVLNYRQYPLRS*
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spliced messenger RNA

>Ec-00_003450.1 ID=Ec-00_003450.1|Name=Ec-00_003450.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=114bp|location=Sequence derived from alignment at chr_00:3440555..3441446- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGACAACCCGTTGCACACCAAACCGATCGGCGCGAGCTAGTCGGGCC
ACCACGTTTGGGGTTGGGAACGACGCCCGTCCTCAACTACCGGCAGTACC
CACTTCGGTCTTGA
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protein sequence of Ec-00_003450.1

>Ec-00_003450.1 ID=Ec-00_003450.1|Name=Ec-00_003450.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=38bp
MRQPVAHQTDRRELVGPPRLGLGTTPVLNYRQYPLRS*
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mRNA from alignment at chr_00:3440555..3441446-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_003450.1 ID=Ec-00_003450.1|Name=Ec-00_003450.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=892bp|location=Sequence derived from alignment at chr_00:3440555..3441446- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCGGTGAGCCCTTGAAGAGGGTGGAGGATGGTGTTACTGCTACATTCG
TATGCTACATATTGAACCATGACACAAGCTATGATACAAAGCCGTGTTGG
GGTTTCCTAAAGAAGTAGGCTTTTCGTGTTGGTTCGGTGCGTTGTCCCCT
AAGATTATGCGAGAACCATCTCCATTTTCACACACCGTGACTGTCAAGAA
CGCCATCAAGGGAGTACATACAGGTGCATACAGCGTCTTTCTGCTCTGTA
TATATAATTGCCGCATTCATCCTTTGGCGGCACATGTCTGTCCAACGACT
GCTCTGTGTTGCTTGTCCCCCTTGTTCAAAGCGCAATCGAAACAACCAAC
TCTCCCCGTGCCTACGCTAACAGCAATAACCTCTGGCAGCGATGCACATT
TGCTTGAACGTCGTGCGAAACAATTCGTCGACATAAGCCATCATTCGCCT
TCCGTACACCGTCAACCATGCCACATCGCGCACAATCCGACCGTCGCACA
CTCGTGATGCTCAAAGGTTGTTGCTATCGTACCATTTGCTTGTCGTGGCA
TGTCCGTCGATGCCCACATTTTCAGCAATGAAACCTAAAGAACCCCCGTC
TCAAACACTCGCATTCTGGAAGACGCACCAATCGTTCTACCAGTTGTACC
CTTTACGCCGTGGTTCAAGCGCTCGAGTACGGCAGGACACATTGAACAAA
CCCAAACGAACATTCACTGTTCTCTTTGCGACACCAGCGAAGCCGACGAA
CCTTCATGTAACACGCGACCAAACGAATCACAGACAACCCGTTGCACACC
AAACCGATCGGCGCGAGCTAGTCGGGCCACCACGTTTGGGGTTGGGAACG
ACGCCCGTCCTCAACTACCGGCAGTACCCACTTCGGTCTTGA
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Coding sequence (CDS) from alignment at chr_00:3440555..3441446-

>Ec-00_003450.1 ID=Ec-00_003450.1|Name=Ec-00_003450.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=114bp|location=Sequence derived from alignment at chr_00:3440555..3441446- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCGACAACCCGTTGCACACCAAACCGATCGGCGCGAGCTAGTCGGGCC
ACCACGTTTGGGGTTGGGAACGACGCCCGTCCTCAACTACCGGCAGTACC
CACTTCGGTCTTGA
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Synonyms
The feature 'Ec-00_003450.1' has the following synonyms
Synonym
Esi217_0050
Esi_217_0050