Ec-00_003430.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_003430.1
Unique NameEc-00_003430.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length314
Homology
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BLAST of Ec-00_003430.1 vs. uniprot
Match: D7FRQ4_ECTSI (Protein YIPF n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRQ4_ECTSI)

HSP 1 Score: 523 bits (1347), Expect = 1.960e-185
Identity = 295/295 (100.00%), Postives = 295/295 (100.00%), Query Frame = 1 
Query:   55 AKRCSINDASDSLCLYCHVCLTMEDEWYSGADTTDGTGXXXXXXXXXXXXQQRTPYGDSFTPPSSQGGIMAGQQAYGAPGASMGGXXXXXXXXXXXXXXXXXXXXXXXVGGGVVGAILEDEEDYENEPPLLEELGINFEHIWSKTLAVILPTKKIDINYLDDTDLAGPLVFCLCFGLCLLLTGKPHFGYIYGFGMFGCIATAMVLNLIGEKPIDLWKTTSVLGYCLLPVIGLAAMGIVTDLRGNLGHVLGFVAVAWCTISATRLFEEYLEMRRQRYLVAYPVGLLYACFVLITVY 939
            AKRCSINDASDSLCLYCHVCLTMEDEWYSGADTTDGTGXXXXXXXXXXXXQQRTPYGDSFTPPSSQGGIMAGQQAYGAPGASMGGXXXXXXXXXXXXXXXXXXXXXXXVGGGVVGAILEDEEDYENEPPLLEELGINFEHIWSKTLAVILPTKKIDINYLDDTDLAGPLVFCLCFGLCLLLTGKPHFGYIYGFGMFGCIATAMVLNLIGEKPIDLWKTTSVLGYCLLPVIGLAAMGIVTDLRGNLGHVLGFVAVAWCTISATRLFEEYLEMRRQRYLVAYPVGLLYACFVLITVY
Sbjct:   51 AKRCSINDASDSLCLYCHVCLTMEDEWYSGADTTDGTGXXXXXXXXXXXXQQRTPYGDSFTPPSSQGGIMAGQQAYGAPGASMGGXXXXXXXXXXXXXXXXXXXXXXXVGGGVVGAILEDEEDYENEPPLLEELGINFEHIWSKTLAVILPTKKIDINYLDDTDLAGPLVFCLCFGLCLLLTGKPHFGYIYGFGMFGCIATAMVLNLIGEKPIDLWKTTSVLGYCLLPVIGLAAMGIVTDLRGNLGHVLGFVAVAWCTISATRLFEEYLEMRRQRYLVAYPVGLLYACFVLITVY 345
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BLAST of Ec-00_003430.1 vs. uniprot
Match: A0A6H5JG11_9PHAE (Protein YIPF n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG11_9PHAE)

HSP 1 Score: 479 bits (1234), Expect = 3.340e-168
Identity = 275/295 (93.22%), Postives = 279/295 (94.58%), Query Frame = 1 
Query:   55 AKRCSINDASDSLCLYCHVCLTMEDEWYSGADTTDGTGXXXXXXXXXXXXQQRTPYGDSFTPPSSQGGIMAGQQAYGAPGASMGGXXXXXXXXXXXXXXXXXXXXXXXVGGGVVGAILEDEEDYENEPPLLEELGINFEHIWSKTLAVILPTKKIDINYLDDTDLAGPLVFCLCFGLCLLLTGKPHFGYIYGFGMFGCIATAMVLNLIGEKPIDLWKTTSVLGYCLLPVIGLAAMGIVTDLRGNLGHVLGFVAVAWCTISATRLFEEYLEMRRQRYLVAYPVGLLYACFVLITVY 939
            A++      +  +C YCHVC  MEDEWYSGADTTDGTGXXXXXXXXXXXX   T YGDSFTPPSSQGGIMAGQQAYGAPGASMGGXXXXXXXXXXXXXXXXXXXXXXXVG GVVGAILEDEEDYENEPPLLEELGINFEHIWSKTLAVILPTKKIDINYLDDTDLAGPLVFCLCFGLCLLLTGKPHFGYIYGFGMFGCIATAMVLNLIGEKPIDLWKTTSVLGYCLLPVIGLAAMGIVTDLRGNLGHVLGFVAVAWCTISATRLFEEYLEMRRQRYLVAYPVGLLYACFVLITVY
Sbjct:   53 ARQRGAQSTTHQICCYCHVCPIMEDEWYSGADTTDGTGXXXXXXXXXXXXXXXTTYGDSFTPPSSQGGIMAGQQAYGAPGASMGGXXXXXXXXXXXXXXXXXXXXXXXVGVGVVGAILEDEEDYENEPPLLEELGINFEHIWSKTLAVILPTKKIDINYLDDTDLAGPLVFCLCFGLCLLLTGKPHFGYIYGFGMFGCIATAMVLNLIGEKPIDLWKTTSVLGYCLLPVIGLAAMGIVTDLRGNLGHVLGFVAVAWCTISATRLFEEYLEMRRQRYLVAYPVGLLYACFVLITVY 347
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BLAST of Ec-00_003430.1 vs. uniprot
Match: A0A835Z6H4_9STRA (Protein YIPF n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6H4_9STRA)

HSP 1 Score: 256 bits (655), Expect = 4.260e-82
Identity = 132/239 (55.23%), Postives = 162/239 (67.78%), Query Frame = 1 
Query:  226 DSFTPPSSQGGIM-AGQQAYGAPGASMGGXXXXXXXXXXXXXXXXXXXXXXXVGGGVVGAILEDEEDYENEPPLLEELGINFEHIWSKTLAVILPTKKIDINYLDDTDLAGPLVFCLCFGLCLLLTGKPHFGYIYGFGMFGCIATAMVLNLIGEKPIDLWKTTSVLGYCLLPVIGLAAMGIVTDLRGNLGHVLGFVAVAWCTISATRLFEEYLEMRRQRYLVAYPVGLLYACFVLITVY 939
            DSFTPP S GG   AG  A    G + G                          G V G        ++NEPPLLEELGINFEHIW+KT AV++PT++I+  YLD+TDLAGPLVF L FG CLLL GK HFGYIYGFG FGC A ++VLNL+G++PID W+TTSVLGYCLLPV+ L+A+GI  DL G +G  L   AVAW   +AT+LFE+YL+MR QR+L+AYP+GLLY CFVL+ ++
Sbjct:    6 DSFTPPPSGGGYSGAGSYASDPIGLTHGYGIGQPV-------------------GAVGGXXXXXXXQFDNEPPLLEELGINFEHIWAKTRAVLVPTRRIESAYLDETDLAGPLVFALVFGTCLLLAGKLHFGYIYGFGAFGCGALSLVLNLMGDRPIDAWRTTSVLGYCLLPVVLLSAVGIALDLSGRVGLALAGAAVAWSCTAATKLFEQYLDMRHQRWLIAYPIGLLYCCFVLMAIF 225
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BLAST of Ec-00_003430.1 vs. uniprot
Match: A0A7S0DM30_9EUKA (Protein YIPF n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DM30_9EUKA)

HSP 1 Score: 229 bits (583), Expect = 7.250e-72
Identity = 103/175 (58.86%), Postives = 134/175 (76.57%), Query Frame = 1 
Query:  415 EEDYENEPPLLEELGINFEHIWSKTLAVILPTKKIDINYLDDTDLAGPLVFCLCFGLCLLLTGKPHFGYIYGFGMFGCIATAMVLNLIGEKPIDLWKTTSVLGYCLLPVIGLAAMGIVTDLRGNLGHVLGFVAVAWCTISATRLFEEYLEMRRQRYLVAYPVGLLYACFVLITVY 939
            E D+ NEPPLLEELGINF+HIW KTLAV++P K++    + D D+AGPL FCL  G CLLLTGK HFGYIYGFG+ GC+   ++LNL+ ++ ID+++T S+LGYCLLP++ LAA  IV +L+G +G     V + WCT++ATR  E  L+MR QRYLVAYP+ LLY+CF LITV+
Sbjct:    5 ELDFSNEPPLLEELGINFDHIWQKTLAVLVPVKELKQEIMVDADMAGPLFFCLLLGFCLLLTGKVHFGYIYGFGLIGCLGMYIILNLMSDRSIDIYRTASILGYCLLPIVSLAAASIVFNLKGYIGFSTTTVTILWCTVAATRFVEATLDMRPQRYLVAYPLMLLYSCFALITVF 179
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BLAST of Ec-00_003430.1 vs. uniprot
Match: W7U1N9_9STRA (Protein YIPF n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7U1N9_9STRA)

HSP 1 Score: 226 bits (575), Expect = 1.340e-69
Identity = 111/189 (58.73%), Postives = 138/189 (73.02%), Query Frame = 1 
Query:  382 GGGVVGAILED---EEDYENEPPLLEELGINFEHIWSKTLAVILPTKKIDINYLDDTDLAGPLVFCLCFGLCLLLTGKPHFGYIYGFGMFGCIATAMVLNLIGEKPIDLWKTTSVLGYCLLPVIGLAAMGIVTDLRGNLGHVLGFVAVAWCTISATRLFEEYLEMRRQRYLVAYPVGLLYACFVLITVY 939
            GGG  G  ++    EEDY  EPPLL ELGINF+HIW KT  V++P   +D + +DD DLAGPL F L FG+ LL+TGK HFGYIYGFG+ GCIA  +VLNL+  K ID+W+  S+LGY LLPVIGLA +GI   L+G +G  L  + +AW T ++TRLFE+ L M +QRYLVAYPV L+YA FVLITV+
Sbjct:   66 GGGQWGGSMDSGGGEEDYSMEPPLLVELGINFQHIWEKTKTVLMPLGSMDEHIMDDADLAGPLFFLLSFGIFLLMTGKVHFGYIYGFGVSGCIAMYLVLNLLSPKDIDVWRVCSILGYGLLPVIGLAFLGIAVSLKGGVGQGLATLTIAWSTYASTRLFEKALNMSQQRYLVAYPVALVYAIFVLITVF 254
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BLAST of Ec-00_003430.1 vs. uniprot
Match: A0A8K1CDX0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CDX0_PYTOL)

HSP 1 Score: 224 bits (572), Expect = 1.370e-69
Identity = 106/179 (59.22%), Postives = 139/179 (77.65%), Query Frame = 1 
Query:  412 DEEDYENEPPLLEELGINFEHIWSKTLAVILPTKKIDINYLDDTDLAGPLVFCLCFGLCLLLTGKPHFGYIYGFGMFGCIATAMVLNLIG-EKPIDLWKTTSVLGYCLLPVIGLAAMGIVTDLR--GNLGHVLGFVAVAWCTISATRLFEEYLEMRRQRYLVAYPVGLLYACFVLITVY 939
            D+E+YENEPPLLEELGINF+HIW KT +V+LPTK+I+ + LDD DLAGPLV+C  FG+CLLL  K HFGYIYGFG+  C+   +++NL+  ++ ID+++  SVLGYCLLP+IGLAA+ I   ++  G  G  L  VA+ W T +A+R FE+ L M  Q+YL+AYPVGL+YACFVLITV+
Sbjct:   44 DDEEYENEPPLLEELGINFDHIWLKTQSVLLPTKQINEHILDDADLAGPLVYCFVFGMCLLLAAKVHFGYIYGFGVLSCVFMYLLMNLLSPDRAIDIYRVCSVLGYCLLPIIGLAAINIFVSVQKLGLAGFALATVAILWSTHTASRFFEKALYMSEQKYLIAYPVGLVYACFVLITVF 222
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BLAST of Ec-00_003430.1 vs. uniprot
Match: A0A7S2TR42_9EUKA (Protein YIPF n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TR42_9EUKA)

HSP 1 Score: 222 bits (566), Expect = 3.180e-69
Identity = 109/183 (59.56%), Postives = 133/183 (72.68%), Query Frame = 1 
Query:  397 GAILEDEEDYENEPPLLEELGINFEHIWSKTLAVILPTKKIDINYLDDTDLAGPLVFCLCFGLCLLLTGKPHFGYIYGFGMFGCIATAMVLNLIGE--KPIDLWKTTSVLGYCLLPVIGLAAMGIVTDLRGNLGHVLGFVAVAWCTISATRLFEEYLEMRRQRYLVAYPVGLLYACFVLITVY 939
            G  L D  DY+NEPPLLEELGINF+HI  KTLAV++PTK  D   + D D+AGPLVFCL  G CL+L  K HFGYIYGFG+ GC+    +LNL+ +  K ID+++T S+LGYCLLP++GLAA+  V  L+G LG  L    V WCTI+ATR  E  L MR QRYLVAYP+ LLY+CF LITV+
Sbjct:    2 GGSLSDLPDYDNEPPLLEELGINFDHIMQKTLAVLIPTKTPDHEIMIDADMAGPLVFCLLLGFCLMLRLKMHFGYIYGFGLIGCLGMYTILNLMSDPDKSIDIFRTISILGYCLLPIVGLAALSTVLSLKGYLGFGLTAFTVLWCTIAATRFVEATLGMRDQRYLVAYPLMLLYSCFALITVF 184
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BLAST of Ec-00_003430.1 vs. uniprot
Match: A0A1V9YZW9_9STRA (Protein YIPF n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YZW9_9STRA)

HSP 1 Score: 223 bits (569), Expect = 1.060e-67
Identity = 107/178 (60.11%), Postives = 139/178 (78.09%), Query Frame = 1 
Query:  415 EEDYENEPPLLEELGINFEHIWSKTLAVILPTKKIDINYLDDTDLAGPLVFCLCFGLCLLLTGKPHFGYIYGFGMFGCIATAMVLNLIGE-KPIDLWKTTSVLGYCLLPVIGLAAMGIVTDLRG--NLGHVLGFVAVAWCTISATRLFEEYLEMRRQRYLVAYPVGLLYACFVLITVY 939
            EEDY+NEPPLLEELG+NF HIW+KTL+V+LPTK+I+ N LDDTDLAGPLVFC  FG CLLL+GK HFGYIYGFG+FG      ++NL+   + ID+++  SVLGYCLLP+I LAA+ IV  ++G   +G +L  ++V W T +ATR FE+ L M  QR+L+AYP  ++Y+CFVLITV+
Sbjct:  152 EEDYDNEPPLLEELGVNFNHIWTKTLSVLLPTKQINENILDDTDLAGPLVFCFIFGTCLLLSGKIHFGYIYGFGLFGWAFMWAIMNLLSPTRTIDVYRVCSVLGYCLLPIILLAAINIVISIKGLNYVGFLLAMLSVIWSTHTATRFFEKALHMSDQRFLIAYPTAMVYSCFVLITVF 329
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BLAST of Ec-00_003430.1 vs. uniprot
Match: A0A067CVB2_SAPPC (Protein YIPF n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CVB2_SAPPC)

HSP 1 Score: 222 bits (566), Expect = 1.520e-67
Identity = 107/179 (59.78%), Postives = 138/179 (77.09%), Query Frame = 1 
Query:  412 DEEDYENEPPLLEELGINFEHIWSKTLAVILPTKKIDINYLDDTDLAGPLVFCLCFGLCLLLTGKPHFGYIYGFGMFGCIATAMVLNLIGE-KPIDLWKTTSVLGYCLLPVIGLAAMGIVTDLRG--NLGHVLGFVAVAWCTISATRLFEEYLEMRRQRYLVAYPVGLLYACFVLITVY 939
            D+EDYENEPPLLEELG+NF HIW KT +V+LPTK+I  + LDDTDLAGPLVFC  FG CLLL+GK HFGYIYGFG+FG +    ++NL+   + ID+++  SVLGYCLLP+I LAA+ IV  ++    +G  L F++VAW T +ATR FE+ L M  QR+L+AYP  ++Y+CFVLITV+
Sbjct:  128 DDEDYENEPPLLEELGVNFGHIWMKTQSVLLPTKEITEHILDDTDLAGPLVFCFVFGTCLLLSGKIHFGYIYGFGVFGWVFMWAIMNLLSPTRTIDIYRVCSVLGYCLLPIILLAAVNIVVSVKSLNYIGLALAFLSVAWSTQTATRFFEKALHMHDQRFLIAYPTAMVYSCFVLITVF 306
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BLAST of Ec-00_003430.1 vs. uniprot
Match: K3WQV6_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WQV6_GLOUD)

HSP 1 Score: 219 bits (559), Expect = 3.060e-67
Identity = 107/193 (55.44%), Postives = 142/193 (73.58%), Query Frame = 1 
Query:  385 GGVVGAILE-----DEEDYENEPPLLEELGINFEHIWSKTLAVILPTKKIDINYLDDTDLAGPLVFCLCFGLCLLLTGKPHFGYIYGFGMFGCIATAMVLNLIG-EKPIDLWKTTSVLGYCLLPVIGLAAMGIVTDLR--GNLGHVLGFVAVAWCTISATRLFEEYLEMRRQRYLVAYPVGLLYACFVLITVY 939
            GG+ G +       D+EDY NEPPLLEELGINFEHIW KT +V+LP K+I+ + LDD DLAGPLVFC  FG+CLLL  K HFGYIYGFG+  C+   +++NL+  E+ ID+++  SVLGYCLLP+IGLAA+ IV  ++  G +G  L  + + W T +A+R FE+ L M  Q+YL+AYP+ L+Y+CFVLITV+
Sbjct:   58 GGISGTVGSSYADPDDEDYSNEPPLLEELGINFEHIWLKTQSVLLPMKQINEHILDDADLAGPLVFCFLFGMCLLLAAKVHFGYIYGFGVISCLFMYLLMNLLSPERTIDIYRVCSVLGYCLLPIIGLAAINIVVSVKDLGLVGFGLASLCILWSTHTASRFFEKALYMTEQKYLIAYPIVLVYSCFVLITVF 250
The following BLAST results are available for this feature:
BLAST of Ec-00_003430.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRQ4_ECTSI1.960e-185100.00Protein YIPF n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
A0A6H5JG11_9PHAE3.340e-16893.22Protein YIPF n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A835Z6H4_9STRA4.260e-8255.23Protein YIPF n=1 Tax=Tribonema minus TaxID=303371 ... [more]
A0A7S0DM30_9EUKA7.250e-7258.86Protein YIPF n=1 Tax=Amorphochlora amoebiformis Ta... [more]
W7U1N9_9STRA1.340e-6958.73Protein YIPF n=3 Tax=Monodopsidaceae TaxID=425072 ... [more]
A0A8K1CDX0_PYTOL1.370e-6959.22Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S2TR42_9EUKA3.180e-6959.56Protein YIPF n=1 Tax=Lotharella oceanica TaxID=641... [more]
A0A1V9YZW9_9STRA1.060e-6760.11Protein YIPF n=1 Tax=Thraustotheca clavata TaxID=7... [more]
A0A067CVB2_SAPPC1.520e-6759.78Protein YIPF n=2 Tax=Saprolegnia TaxID=4769 RepID=... [more]
K3WQV6_GLOUD3.060e-6755.44Uncharacterized protein n=1 Tax=Globisporangium ul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:3404800..3411074 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score520.8
Seed ortholog evalue4.5e-145
Seed eggNOG ortholog2880.D7FRQ4
Preferred nameYIPF4
Length942
KEGG koko:K20363
Hectar predicted targeting categoryother localisation
Gene idEc-00_003430.1
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005794,GO:0005886,GO:0012505,GO:0016020,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0071944
EggNOG free text desc.vesicle-mediated transport
EggNOG OGsCOG5080@1,KOG3103@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_003430Ec-00_003430Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 3403316..3414677 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003430.1Ec-00_003430.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 3404800..3411074 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003430.1.6Ec-00_003430.1.6Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3404800..3405028 -
Ec-00_003430.1.5Ec-00_003430.1.5Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3406038..3406144 -
Ec-00_003430.1.4Ec-00_003430.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3406933..3407004 -
Ec-00_003430.1.3Ec-00_003430.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3408010..3408267 -
Ec-00_003430.1.2Ec-00_003430.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3409764..3409985 -
Ec-00_003430.1.1Ec-00_003430.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3411021..3411074 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003430.1CDS:Ec-00_003430.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 3404800..3405028 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_003430.1 ID=Ec-00_003430.1|Name=Ec-00_003430.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=314bp
MHAHSNHFRRNTINRSSRAKRCSINDASDSLCLYCHVCLTMEDEWYSGAD
TTDGTGGGGGGALAGGGAQQRTPYGDSFTPPSSQGGIMAGQQAYGAPGAS
MGGYGGHAAAAVGAGGMRAEGVGGRGVGGGVVGAILEDEEDYENEPPLLE
ELGINFEHIWSKTLAVILPTKKIDINYLDDTDLAGPLVFCLCFGLCLLLT
GKPHFGYIYGFGMFGCIATAMVLNLIGEKPIDLWKTTSVLGYCLLPVIGL
AAMGIVTDLRGNLGHVLGFVAVAWCTISATRLFEEYLEMRRQRYLVAYPV
GLLYACFVLITVY*
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spliced messenger RNA

>Ec-00_003430.1 ID=Ec-00_003430.1|Name=Ec-00_003430.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=942bp|location=Sequence derived from alignment at chr_00:3404800..3411074- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACGCACACAGTAACCACTTCAGACGTAATACGATCAACAGATCATC
ACGTGCAAAGAGGTGCTCAATCAACGACGCATCAGATTCCCTCTGTCTCT
ATTGTCACGTGTGCCTAACCATGGAGGACGAATGGTACTCGGGAGCTGAT
ACAACCGATGGGACTGGCGGCGGGGGTGGAGGAGCCCTTGCTGGGGGCGG
TGCACAGCAGAGAACGCCGTACGGGGACTCGTTCACCCCACCGAGCTCCC
AAGGCGGAATAATGGCAGGCCAGCAGGCCTACGGAGCTCCTGGCGCAAGC
ATGGGCGGCTATGGCGGGCACGCAGCAGCAGCCGTAGGGGCGGGAGGCAT
GCGGGCGGAGGGAGTGGGCGGCCGAGGGGTGGGGGGCGGGGTCGTCGGTG
CCATCCTGGAGGACGAGGAGGACTACGAGAACGAGCCCCCGTTGCTGGAG
GAGCTGGGCATCAACTTCGAGCACATCTGGTCGAAAACGCTCGCGGTGAT
CTTGCCCACGAAGAAGATCGACATCAACTACCTGGACGACACGGACCTGG
CAGGTCCGCTTGTGTTCTGCTTGTGCTTCGGGCTGTGCCTCCTCTTGACG
GGAAAGCCACACTTTGGGTACATCTATGGGTTCGGAATGTTTGGGTGCAT
CGCGACGGCGATGGTGCTCAACCTAATCGGAGAAAAGCCGATTGACCTCT
GGAAAACGACAAGTGTTCTGGGGTACTGCCTCTTGCCGGTCATCGGCTTA
GCGGCGATGGGGATAGTGACGGACCTGCGTGGGAACTTGGGGCACGTGCT
GGGGTTCGTGGCGGTGGCCTGGTGCACCATTTCGGCCACCCGCTTGTTCG
AGGAGTATCTGGAGATGCGAAGACAGCGGTATCTCGTGGCCTACCCTGTA
GGCCTGCTGTACGCTTGTTTCGTTCTCATCACGGTGTACTAA
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protein sequence of Ec-00_003430.1

>Ec-00_003430.1 ID=Ec-00_003430.1|Name=Ec-00_003430.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=314bp
MHAHSNHFRRNTINRSSRAKRCSINDASDSLCLYCHVCLTMEDEWYSGAD
TTDGTGGGGGGALAGGGAQQRTPYGDSFTPPSSQGGIMAGQQAYGAPGAS
MGGYGGHAAAAVGAGGMRAEGVGGRGVGGGVVGAILEDEEDYENEPPLLE
ELGINFEHIWSKTLAVILPTKKIDINYLDDTDLAGPLVFCLCFGLCLLLT
GKPHFGYIYGFGMFGCIATAMVLNLIGEKPIDLWKTTSVLGYCLLPVIGL
AAMGIVTDLRGNLGHVLGFVAVAWCTISATRLFEEYLEMRRQRYLVAYPV
GLLYACFVLITVY*
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mRNA from alignment at chr_00:3404800..3411074-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_003430.1 ID=Ec-00_003430.1|Name=Ec-00_003430.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=6275bp|location=Sequence derived from alignment at chr_00:3404800..3411074- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCACGCACACAGTAACCACTTCAGACGTAATACGATCAACAGATCATC
ACGTGCCTGAGCGGATCTACGACCCTAGTAGACGCATGCTGATGGTGTTG
CTGCTTGGCATCTCCAGTAGGTGACAGCAGCAGTCGTCACACCCAGCTGC
AGCTCACAACTCCAGCTCGGGATCCCGTGTTTCATCCGAGCTGCTACTCG
CTGGTTGACCAGTTCTTCGATCCTGGCGTCCTCCGCTGCTTGGCGGGCTT
CCGCTGCTGGGCGGGATTCATCTTCGCGCCTGGTGGCCATCGTGACCCTG
CTCTTGATCGCCGCAAAGCGATGCTCCTAAACCAAGCTCGACCGCGAATC
TCGTAGACGACGTGTCATACGCTAGCGTGATCGATAATTCGGGTGGCTCG
GTTCTTTGTGCTTGGAGCTCAAAGCGGGTGGCTCATGGCGGGGCGTGGAA
GGGTAGAAACATGTAGCAAACGTATCGAAAAGGATTGTATTCGTCGGGGG
CGTGCCAGTGCTCGTCAAACCTTCACGGTATCTGGGCACGCCTTCACTCT
TTGTCACTCAACGAATCTCTCTGAATCTCCACCAAATACCTCTCGCAACC
AAGGAATATATGTAGAAAGTTCCTATCCCTCCGCATCTCATCACTGTTAC
TTTCGTACGTACGTACCGGACATCTCAACCGTCATACTATGCTACGAGTA
CTCCCAATATATCTAATAGCCCTGCAACAATTATGCACCCCCCCACAGAT
GAACACAGCAGCTCACAATAGAAAACAGAGCGAAACGGAAACCGCGCCAT
AGATGACAACATGCAATCACCCGCCTCATCCCAAGCTGGTATGTCCCTGT
CTAAAGCACACACCGTAGAAAGAAGCCGGAGTCTGGGTTCACCCGTTTGT
AGCCGGAGCCTGGGTGCCGTGTGCTGCCCGCGCAGTGCAGCAGCATTCCC
GCAGGCAGTCCGGTGGGGCTCCGTGGTCTTACCACCGTTTCAAATGTCGT
CACACACGCCTACCACTCCCCTGACCCATTTTCCGCCGTCCCCCTAATCT
CGCCGCCGCTTGCCTGCCTCCGACGGGCACGCTGCACAGGCAAAGAGGTG
CTCAATCAACGACGCATCAGATTCCCTCTGTCTCTATTGTCACGTGTGCC
TAACCATGGAGGACGAATGGTACTCGGGAGCTGATACAACCGATGGGACT
GGCGGCGGGGGTGGAGGAGCCCTTGCTGGGGGCGGTGCACAGCAGAGAAC
GCCGTACGGGGACTCGTTCACCCCACCGAGCTCCCAAGGCGGAATAATGG
CAGGCCAGCAGGTATCGCCAGCAGTGCAGAGCTTCCGGTCTATTGTGCTT
GAAAGCGAAAGACTGTTGTGTGCTCTTTGGATTGGGGTAGAGTTCTAATT
TGACTATACCTGCATCCTCTGCATATCACGGGGTGTATGGTACGGCGGGG
AAGAAGCGGCCATGTGCCGTGCTGCCGTGTGCCTACAGCAGTGTAGGTTG
GTCCCAAAAGGGACCGTCCACCCTTACCGATGACCTCCGTCCCGGTTGAA
AGCCATACCCACCTCCGCGTTGTACGGGGGTTCTGTTCTGTCACGAACGC
CCAGCTCCTTATGGCAAAGTTTATTGGAATATTTACTCCAGATTACCGGC
CGGGTGTACTCCAACGAGGATTCCCACGCAGCTGCTTTTCCTTCCGCGAG
CGTTTTGTTCGGTGTCGACGGCGGTGCCACTGCTGCTGTTGCACCTGTTG
ACCCTCACCCATGCGCAAAACCGTTACCTCTTTGGGTGGAACATTAAAGT
ATGTATGTCGTTCGGCCACGCCCCCTAATGTATGCATATCGCACATATAC
ATACTGCCTCCATCGTGGTTGTACCAACGCTCGCACAGCCGAAAACAACC
TTGGCATCACCCACAAGAAGACGCTGATACGCATAGCTTGCGTGATGCCT
GAGAAGGACGCTACAATATACATCAGGAGTGTTCGCAGCAATAATCCATT
GTTTCCCTGTGCCGCAGCCCCCGCCTTTCGCGAGTCACCCACAAACACCC
ACATCAACAAGGCATGCGCCCGCCTGCTCGATATTCCCTTACGATCTCGT
ACTGAACCTACGAGGGGCGCGGGGCACTCCGCTCTACCTCTTAACAGTCT
AAACAATAGTACACTGCTGTCTCGACGTCCTCTGGAGCCAGAGAGCGCAT
TTTTGCCGCAGACAGCGGCAGTAATGTTGTGGCTGACTGCAGTGGCATTT
CGGGAGTCTCGCATTCCAATCACATGAACCCAAGAATGGATGACTCAGCG
GTTTTTTGGGCGATGTATTCTACGCGGGGACCCCATCTCTCTCATGCTTT
GGCAGTTCTGGGCCGAGCAGAGCCAGCGGGACGTATCGGCTGGTTTTTTG
TGCATGTAGAACTCGTCAAGTGTCCAAGTGCAATCTCACTTACCCCTCGA
TTCCGTCCCAAATTGGATGTATGCGCCAATTGGACTGGCCCGTCAGGGCA
GGCAATGTGGGCAAGTACGCTGGCTCTAGTGAAACGATTACTGCTGCAGC
TTGGCAGCTCGCCAATGGTCCGACCACAAAGCAATTATCTCGAGACGCGC
ATCTGACCCTCTTGCACGTCCCACTCATTTTCCGCCGTAGTAGCCCACGG
TGTTTTACGCTCCACCGGTTGCCTTCGGGGTTCCTCGCCTGTGTACTGTG
CGACAGCCCCCGTCACGTGATAAGCAACAGGTGTTTGCCATAGTCTCGGG
TGAGCGCGACCTAACAAATGTACACAAATTCGTGAACGGCATCGTTGTTT
TGTCCAGGCCTACGGAGCTCCTGGCGCAAGCATGGGCGGCTATGGCGGGC
ACGCAGCAGCAGCCGTAGGGGCGGGAGGCATGCGGGCGGAGGGAGTGGGC
GGCCGAGGGGTGGGGGGCGGGGTCGTCGGTGCCATCCTGGAGGACGAGGA
GGACTACGAGAACGAGCCCCCGTTGCTGGAGGAGCTGGGCATCAACTTCG
AGCACATCTGGTCGAAAACGCTCGCGGTGATCTTGCCCACGAAGAAGATC
GACATCAACTACCTGGTGAGTTCGCGAGTTGTTGTCCGTGGGAGGGTGGG
GTGTTTGAACGCCTGACTTCGGTGATGAGGGAATTCCTTGGTGCGGTACC
AAATCTCTAGATTGGGAGCATTCTGTGATGTTGCTTTGTGTGGCTCCTGC
TGTCCCGCGCGCGCCAGTGCTGCATGCCTTGGTGTTGCCAAACACCGCCT
GCCTACCGCTGACACATGCGAACGGCAGAAGCGCACGCCCATGTTCTCTC
CACGAAAATTCCAAGCCAAGCACGACGTGTTTTGGTACCGATCCTGGCAA
GTGGCTTTCAAGACCGCGGGTACTGGAAGATCACGTAGAAGGGGCACGCG
AGATCACCCCCCGTTCAGAGTAACTCGCCCGGGGAAAGGTCCTGTTGGAG
GCCCCCTAGTTGTTCAGAATGCGGTGTCGCGTGAGCCAGCCAGGGCCAGC
TCGTAGCCAGTGGGCGGGAATGGTTTCCGTTTGTTGAGCTGAGGCATATG
ACTGACCCAACAGTCGACGTGCTGACAGCTCGATGGCGGTATCCATGATG
AACACCGGCCCCAAAGGTTCCCCTCACGGTCACGGCAAATGCCACTGAAA
CACGGACCAGTCGGAAAACTAGTGCCCGGAACGCGCAGATATCTAGGGCA
CAATTTTTTGCGACTGTTAGGCAGCAAGCAGAAGTATGGATCGTGCTTCA
GCAGACATGCTCTGACCACGTGATCGGAACAGTGAGTATCTGCTTCGCCG
ACATGTGCCGTTTGTTGGTATTGCTCGAGCAGTTGCTTGTGAAGCTCCCA
TCGACCACGCTACACAAGGCTCTACTCAGCTGTTGATGTTGCCTCTGCTG
CTGCTGCTGCTGCTGCTGCTGTTTCCTTCCTTCCTGCTGCCATGTGCGAT
TCTGGTGTGCCCTACTATTCTTTCTATATATATATCTGACTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACAC
ACACACCACACACGCCACAGGACGACACGGACCTGGCAGGTCCGCTTGTG
TTCTGCTTGTGCTTCGGGCTGTGCCTCCTCTTGACGGGAAAGGTGAGCGA
AGCCAAGAAGATTTGCGGGGACGGCGGGGTTGGTGAAGCGGGGCAGGTGG
ACTGGATGCCAACATACGGCGCGTGTGTGTGTGAACAGTACCAGCGGCGA
CACCGGCGGTATATTTGATGCTGCTGTTCGAGTGCCAAGCTTCAGCGTAC
ACCACTCAAGAGCAGCGGCGCGTGCACAGCTGAAATACTCCCGTGCATGA
AACCAAAGCTCGGATTGCACGTATGCCTATGTAATTGGAAGCCTTGGACT
TGTGCACGAGGCGTGTATGAAGGGCAGGTGCCTCATGCATCGCCAGGGGA
AGAGTAGCGTCGGATATGTTGGAGAAGAAAGACGACGTACGTACCGCCGC
CGCCGCTAATCAACAGGCACTCCGCAAAGGCCAGGGCTGGCGCTTCAAAA
TTTAGCCCGCGTGTGGTACTTGCGTGTGTGTGTGCCCCTGGCGAAAAGTC
TACGTAGGGATTGGTGTTCATCTGCCTCCCCCCCTCTCGCGGTCGTTGCG
GTGTGGTATTATTGTGCGTTACTTGCACACTCCAGCGACTCCTGGAGGGA
CGACGGGCGACCCCTGAGTTTTCCCCCCGCAGCGTTTGACTTTGTGCGAT
CGACTCCGTGGCACGACGCTCCTACCTGCAGCGCTATCCTATCCCCCGCG
CGCCTTTCTTCAACCTTGCGGAATGGTGTGAGTGATTACGCCTGTTTTCT
TCAACTGCTGCGCTCTCAAGACCTCCTGCTTGCCCAAATCACCCTGCCTA
CCGCCTACCGTTGTCTCACGTCACCCGCAGCCACACTTTGGGTACATCTA
TGGGTTCGGAATGTTTGGGTGCATCGCGACGGCGATGGTGCTCAACCTAA
TCGGAGAAAAGCCGATTGACCTCTGGAAAACGACAAGGTGTGTGTCCCAG
TTCCTTTTACCCCACTCCGCGCCCATCTTCCTCGCCGGCAGAGAACTCGT
GCTTGCTCCGAAGAACACGCCTCAACCCTGCCAATCGGCATTCGGGGATT
TTCCTGCTGGTGGATGTCAGGAAGTGGTGCTGGTGTGGCAGGTGTTTGAG
ATGTGCGGTAGGCATGATGAAGAACGTGGTAGGCCGTTGTCGTGTCCGCG
CAATGGGCCAAACTGTGGGCGCAGCGCCAGCGGTGAATGAGCTGCTAATA
CTTGCCTTGTTCACTCACATCTTCTTCCATTGTAGCTGTGCGCAAGCACA
GAGCGGCACTGAGTCCCCCTACCCTAGCGCGGCAGCCACAGCCAACCTGA
CCTGAATCCCGCCCCCCCACCCCCTCGGCCTTGTTTGCCATCGGGGTTGG
GTTTTCGTCGCTTGGCAACGACGTTGTAAAACAAGCCCCCCGCTCGGTGT
TTGCCATCGGGATTGGGTTTTCGTCGCTTGGCAACGACGTTGTAAAACAA
GCCAATTCACTTCGTGAACTCGGCAACCAGGTTACCGTTTTTTTTTTTAC
CTCTGTTTTTTTTTTTTGGCGGTAACCGTGAATGGTGGTCGAGTAGATCA
TGTTGTGCGGGGTGGAGAACCCTCACTCCGCGCAAGGGGGATGATCGCAC
CACGTTGTGTTAAAATGGTCAAGCATCCTCGAGGAAGTTACACAGTGCTT
ACAACTGTCTCTGGAAGTGAAAGCACCAGAAAATAAATTAAGTCATACGT
AGCTGTCATCCGTACGCAAGGAAGTAAGCACAAGATGCCGAACACCCTTA
GCAGGATGCATCTCACCCTTCATGCGACTCGCCAAATACCTCACGGCGCT
TCGCGCTTGGTGATGTGAGAGCCTGGTCCGGTGAGAACCCGGCGTGCTCC
GTCCCGGCTTTGTAGGGATGCGAGGTCAATGGTCTAACGACTACGGCATG
CACGACTATGAGTACACCCCCCCCCCCCGACATCCCAACCATGCAGTGTT
CTGGGGTACTGCCTCTTGCCGGTCATCGGCTTAGCGGCGATGGGGATAGT
GACGGACCTGCGTGGGAACTTGGGGCACGTGCTGGGGTTCGTGGCGGTGG
CCTGGTGCACCATTTCGGCCACCCGCTTGTTCGAGGAGTATCTGGAGATG
CGAAGACAGCGGTATCTCGTGGCCTACCCTGTAGGCCTGCTGTACGCTTG
TTTCGTTCTCATCACGGTGTACTAA
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Coding sequence (CDS) from alignment at chr_00:3404800..3411074-

>Ec-00_003430.1 ID=Ec-00_003430.1|Name=Ec-00_003430.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=942bp|location=Sequence derived from alignment at chr_00:3404800..3411074- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCACGCACACAGTAACCACTTCAGACGTAATACGATCAACAGATCATC
ACGTGCAAAGAGGTGCTCAATCAACGACGCATCAGATTCCCTCTGTCTCT
ATTGTCACGTGTGCCTAACCATGGAGGACGAATGGTACTCGGGAGCTGAT
ACAACCGATGGGACTGGCGGCGGGGGTGGAGGAGCCCTTGCTGGGGGCGG
TGCACAGCAGAGAACGCCGTACGGGGACTCGTTCACCCCACCGAGCTCCC
AAGGCGGAATAATGGCAGGCCAGCAGGCCTACGGAGCTCCTGGCGCAAGC
ATGGGCGGCTATGGCGGGCACGCAGCAGCAGCCGTAGGGGCGGGAGGCAT
GCGGGCGGAGGGAGTGGGCGGCCGAGGGGTGGGGGGCGGGGTCGTCGGTG
CCATCCTGGAGGACGAGGAGGACTACGAGAACGAGCCCCCGTTGCTGGAG
GAGCTGGGCATCAACTTCGAGCACATCTGGTCGAAAACGCTCGCGGTGAT
CTTGCCCACGAAGAAGATCGACATCAACTACCTGGACGACACGGACCTGG
CAGGTCCGCTTGTGTTCTGCTTGTGCTTCGGGCTGTGCCTCCTCTTGACG
GGAAAGCCACACTTTGGGTACATCTATGGGTTCGGAATGTTTGGGTGCAT
CGCGACGGCGATGGTGCTCAACCTAATCGGAGAAAAGCCGATTGACCTCT
GGAAAACGACAAGTGTTCTGGGGTACTGCCTCTTGCCGGTCATCGGCTTA
GCGGCGATGGGGATAGTGACGGACCTGCGTGGGAACTTGGGGCACGTGCT
GGGGTTCGTGGCGGTGGCCTGGTGCACCATTTCGGCCACCCGCTTGTTCG
AGGAGTATCTGGAGATGCGAAGACAGCGGTATCTCGTGGCCTACCCTGTA
GGCCTGCTGTACGCTTGTTTCGTTCTCATCACGGTGTACTAA
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Synonyms
The feature 'Ec-00_003430.1' has the following synonyms
Synonym
Esi0217_0023
Esi_0217_0023