Ec-00_003390.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_003390.1
Unique NameEc-00_003390.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length590
Homology
[Close]
BLAST of Ec-00_003390.1 vs. uniprot
Match: D7FRQ0_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRQ0_ECTSI)

HSP 1 Score: 606 bits (1563), Expect = 1.290e-213
Identity = 349/349 (100.00%), Postives = 349/349 (100.00%), Query Frame = 1 
Query:  721 VFLSGGEVDARRRAEMSAAVSHAPAXXXXXXXXXXXXXXEAPTLDPTRDQLRPGGHATTSGDAAAVELATDLDAGDAAAPAGSEQPNNTPRGREGSSLPLLSGMAAMMSMIFILGDLVNKRMLHPVSTGVFLLSVSYCVAMLRRQWASTGGGTREGCNNSFTKEAREELITYFVFGAGPEGLPTEAGAXXXXXXXKKGNRPKQQERGNGASGDELQLLRLVLSYREQPVKVKAAAEEDDPARACDSGEWSTGQACIVCFGDYEPGDRLARLPCRHVYHAQCIDEWLDRAKLPSCPLCKTDLRHATPPDDPCRSISTAGXXXXXXXXXXXXXXXXXXXXERVEFTGDNAV 1767
            VFLSGGEVDARRRAEMSAAVSHAPAXXXXXXXXXXXXXXEAPTLDPTRDQLRPGGHATTSGDAAAVELATDLDAGDAAAPAGSEQPNNTPRGREGSSLPLLSGMAAMMSMIFILGDLVNKRMLHPVSTGVFLLSVSYCVAMLRRQWASTGGGTREGCNNSFTKEAREELITYFVFGAGPEGLPTEAGAXXXXXXXKKGNRPKQQERGNGASGDELQLLRLVLSYREQPVKVKAAAEEDDPARACDSGEWSTGQACIVCFGDYEPGDRLARLPCRHVYHAQCIDEWLDRAKLPSCPLCKTDLRHATPPDDPCRSISTAGXXXXXXXXXXXXXXXXXXXXERVEFTGDNAV
Sbjct:    5 VFLSGGEVDARRRAEMSAAVSHAPAXXXXXXXXXXXXXXEAPTLDPTRDQLRPGGHATTSGDAAAVELATDLDAGDAAAPAGSEQPNNTPRGREGSSLPLLSGMAAMMSMIFILGDLVNKRMLHPVSTGVFLLSVSYCVAMLRRQWASTGGGTREGCNNSFTKEAREELITYFVFGAGPEGLPTEAGAXXXXXXXKKGNRPKQQERGNGASGDELQLLRLVLSYREQPVKVKAAAEEDDPARACDSGEWSTGQACIVCFGDYEPGDRLARLPCRHVYHAQCIDEWLDRAKLPSCPLCKTDLRHATPPDDPCRSISTAGXXXXXXXXXXXXXXXXXXXXERVEFTGDNAV 353
[Close]
BLAST of Ec-00_003390.1 vs. uniprot
Match: D7FRQ1_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRQ1_ECTSI)

HSP 1 Score: 410 bits (1053), Expect = 5.630e-135
Identity = 269/449 (59.91%), Postives = 279/449 (62.14%), Query Frame = 1 
Query:  766 MSAAVSHAPAXXXXXXXXXXXXXX-EAPTLDPTRDQLRPGGHATTSGDAAAVELATDLDAGDAAAPAGSEQPNNTPRGREGSSLPLLSGMAAMMSMIFILGDLVNKRMLHPVSTGVFLLSVSYCVAMLRRQWASTGGGTREGCNNSFTKEAREELITYFVFGAGPEGLPTEAGAXXXXXXXKKGNRPKQQERGNGASGDELQLLRL--------------------------------------------------------------------VL--------------------------------------------SYREQPVKVKAAAEEDDPARA-CDSGEWSTGQACIVCFGDYEPGDRLARLPCRHVYHAQCIDEWLDRAKLPSCPLCKTDLRHATPPDDPCRSISTAGXXXXXXXXXXXXXXXXXXXX-ERVEFTGDNAV 1767
            MSAAVS+APA               EAP LDPTRDQLRPGGH TTSGDAAAVELAT LDAGDAA PAG  Q   TPR  EGSSLP L+G+A ++S IFILGDL+NKRMLHP S  VFLLSVSYCVAMLRRQWASTGGGTREG NNSFTKEAR+ELITYFVFGAGPEGLPTEAGA       KKGNRPKQQERGNGASGDELQ+ R                                                                     VL                                            +  EQ      AA EDDP RA  DSGEWSTGQACIVCFGDYEPGDRLA LPCRHVYHAQCIDEWLDRAK+PSCPLCKTDLRHATPPDD  RSISTAGXXXXXXXXXXXXXXXXXXXX ERVEFTGDNAV
Sbjct:    1 MSAAVSNAPASAASAASTTMATDDVEAPALDPTRDQLRPGGHPTTSGDAAAVELATGLDAGDAAGPAGGAQLYTTPRALEGSSLPFLAGLAGIISTIFILGDLLNKRMLHPASIVVFLLSVSYCVAMLRRQWASTGGGTREGRNNSFTKEARKELITYFVFGAGPEGLPTEAGAGAGAG--KKGNRPKQQERGNGASGDELQVSRTSSRRWRRXXXXXXXXXXXXXXXGAGVSDGGAARNGRIDANNADTGGSLSANTPMPSTGPCSPAPLEEEVLDGDAATAATAEDAAVTASPGHATAAVTAAATPTGPELPRATGEDAAEEQASAAAKAAAEDDPTRAQSDSGEWSTGQACIVCFGDYEPGDRLALLPCRHVYHAQCIDEWLDRAKIPSCPLCKTDLRHATPPDDRSRSISTAGXXXXXXXXXXXXXXXXXXXXXERVEFTGDNAV 447
[Close]
BLAST of Ec-00_003390.1 vs. uniprot
Match: A0A6H5JDD0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDD0_9PHAE)

HSP 1 Score: 178 bits (452), Expect = 2.340e-49
Identity = 103/143 (72.03%), Postives = 110/143 (76.92%), Query Frame = 1 
Query:  766 MSAAVSHAPAXXXXXXXXXXXXXX-EAPTLDPTRDQLRPGGHATTSGDAAAVELATDLDAGDAAAPAGSEQPNNTPRGREGSSLPLLSGMAAMMSMIFILGDLVNKRMLHPVSTGVFLLSVSYCVAMLRRQWASTG--GGTRE 1185
            MSAAVS+APA               EAPTL PTRDQLRPGGHAT  GDAAAVELATDLDAGDAAAPAG  Q N TPR  EGSSLP L+G+AA++S IFI+GDL+NKRMLHP S  VFLLSVSYCVAMLRRQWASTG  GG  E
Sbjct:    1 MSAAVSNAPASAASAAATMATAGDVEAPTLYPTRDQLRPGGHATMPGDAAAVELATDLDAGDAAAPAGGAQLNTTPRPLEGSSLPFLAGLAAIISTIFIVGDLLNKRMLHPASIVVFLLSVSYCVAMLRRQWASTGESGGAME 143
[Close]
BLAST of Ec-00_003390.1 vs. uniprot
Match: A0A6H5JEY0_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEY0_9PHAE)

HSP 1 Score: 180 bits (457), Expect = 4.130e-49
Identity = 86/112 (76.79%), Postives = 87/112 (77.68%), Query Frame = 1 
Query: 1432 DDPARACDSGEWSTGQACIVCFGDYEPGDRLARLPCRHVYHAQCIDEWLDRAKLPSCPLCKTDLRHATPPDDPCRSISTAGXXXXXXXXXXXXXXXXXXXXERVEFTGDNAV 1767
            DDPARACD+GEWSTGQACIVCF DYEPGDRLARLPCRHVYHAQCIDEWLDRAKLPSCPLCKTDLRHATPPDD  RSIST G                    E VEFTGDNAV
Sbjct:  142 DDPARACDTGEWSTGQACIVCFSDYEPGDRLARLPCRHVYHAQCIDEWLDRAKLPSCPLCKTDLRHATPPDDRSRSISTVGGAGTSVNAARVGGGSGGG--EGVEFTGDNAV 251
[Close]
BLAST of Ec-00_003390.1 vs. uniprot
Match: A0A6H5KUH7_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUH7_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 8.380e-15
Identity = 35/69 (50.72%), Postives = 44/69 (63.77%), Query Frame = 1 
Query: 1465 WSTGQACIVCFGDYEPGDRLARLPCRHVYHAQCIDEWLDRAKLPSCPLCKTDLRHATPPDDPCRSISTA 1671
            WS  ++CI+CFG+Y  GD L RLPCRH YHA+CID WLD      CPLCK+ L   + P +   +  TA
Sbjct:   72 WSCSESCIICFGEYAEGDVLCRLPCRHTYHAECIDAWLDSPGHSWCPLCKSSLLLPSEPRNSSENGETA 140
[Close]
BLAST of Ec-00_003390.1 vs. uniprot
Match: D8LQW5_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQW5_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 1.130e-14
Identity = 45/109 (41.28%), Postives = 61/109 (55.96%), Query Frame = 1 
Query: 1333 ERGNGASGDELQLLRLVLSYREQPVKVKAAAEEDDPARACDSGE---WSTGQACIVCFGDYEPGDRLARLPCRHVYHAQCIDEWLDRAKLPSCPLCKTDLRHATPPDDP 1650
            E G G SG +  +       +  P + +   +++ P R    G    WS+G++CI+CFG+Y  GD L RLPCRH YHA+CID WLD      CPLCK+ L    PP +P
Sbjct:  408 ESGEGGSGSKPSV---AGPEKRPPPEGEEFDDKEVPERGMTGGLSELWSSGESCIICFGEYAEGDVLCRLPCRHTYHAECIDAWLDGPGHSWCPLCKSSL---LPPSEP 510
[Close]
BLAST of Ec-00_003390.1 vs. uniprot
Match: D8LSX3_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSX3_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 2.220e-14
Identity = 39/67 (58.21%), Postives = 45/67 (67.16%), Query Frame = 1 
Query: 1459 GEWSTGQACIVCFGDYEPGDRLARLPCRHVYHAQCIDEWLDRAKLPSCPLCKTDLRHATPPDDPCRS 1659
            GE STG +CIVCFGDY  G+ L RL C H+YHA+CIDEWLD      CPLCKTD+   +   DP  S
Sbjct:  244 GEGSTGGSCIVCFGDYTYGEELCRLRCGHLYHAKCIDEWLDGENHGWCPLCKTDIMSTSGYLDPAGS 310
[Close]
BLAST of Ec-00_003390.1 vs. uniprot
Match: A0A6H5K661_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K661_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 3.380e-13
Identity = 35/55 (63.64%), Postives = 40/55 (72.73%), Query Frame = 1 
Query: 1459 GEWSTGQACIVCFGDYEPGDRLARLPCRHVYHAQCIDEWLDRAKLPSCPLCKTDL 1623
            GE ST  +CIVCFGDY  G+ L RL C H+YHA+CIDEWLD      CPLCKTD+
Sbjct:  251 GEGSTRGSCIVCFGDYTYGEELCRLRCGHLYHAKCIDEWLDGENHGWCPLCKTDI 305
[Close]
BLAST of Ec-00_003390.1 vs. uniprot
Match: A0A1X7STB2_AMPQE (RING-type domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7STB2_AMPQE)

HSP 1 Score: 65.5 bits (158), Expect = 1.480e-9
Identity = 29/83 (34.94%), Postives = 44/83 (53.01%), Query Frame = 1 
Query: 1378 LVLSYREQPVKVKAAAEEDDPARACDSGEWSTGQACIVCFGDYEPGDRLARLPCRHVYHAQCIDEWLDRAKLPSCPLCKTDLR 1626
            +V S++ +  +   A +   P R  + G      AC +C  D++ G  + +LPC H++H  CIDEWL R     CP CK +LR
Sbjct:    1 MVRSFKRRARRKSLADKLVIPTRRYEEGRQEKHVACNICLEDFKTGTNVRQLPCEHIFHPSCIDEWLSRHSC-VCPNCKMNLR 82
[Close]
BLAST of Ec-00_003390.1 vs. uniprot
Match: A0A1D1XYA5_9ARAE (E3 ubiquitin-protein ligase RNF13 (Fragment) n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1XYA5_9ARAE)

HSP 1 Score: 69.7 bits (169), Expect = 1.660e-9
Identity = 32/58 (55.17%), Postives = 36/58 (62.07%), Query Frame = 1 
Query: 1453 DSGEWSTGQACIVCFGDYEPGDRLARLPCRHVYHAQCIDEWLDRAKLPSCPLCKTDLR 1626
            D GE  T   C +C  D+E GD L  LPC+H YH +CID WL   K  SCPLCKTD R
Sbjct:  128 DDGEVDT---CAICIEDFENGDELRLLPCKHWYHVECIDPWLT-TKSSSCPLCKTDCR 181
The following BLAST results are available for this feature:
BLAST of Ec-00_003390.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRQ0_ECTSI1.290e-213100.00RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D7FRQ1_ECTSI5.630e-13559.91RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JDD0_9PHAE2.340e-4972.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JEY0_9PHAE4.130e-4976.79RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KUH7_9PHAE8.380e-1550.72RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D8LQW5_ECTSI1.130e-1441.28RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D8LSX3_ECTSI2.220e-1458.21RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K661_9PHAE3.380e-1363.64RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A1X7STB2_AMPQE1.480e-934.94RING-type domain-containing protein n=1 Tax=Amphim... [more]
A0A1D1XYA5_9ARAE1.660e-955.17E3 ubiquitin-protein ligase RNF13 (Fragment) n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:3374217..3380028 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score606.7
Seed ortholog evalue1.2e-170
Seed eggNOG ortholog2880.D7FRQ0
Length1770
KEGG koko:K15692,ko:K19045
Hectar predicted targeting categoryother localisation
Gene idEc-00_003390.1
EggNOG free text desc.protein modification by small protein conjugation or removal
EggNOG OGsKOG4628@1,KOG4628@2759
EC2.3.2.27
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_003390Ec-00_003390Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 3368306..3395708 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003390.1Ec-00_003390.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 3374217..3380028 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003390.1.7Ec-00_003390.1.7Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3374217..3374426 -
Ec-00_003390.1.6Ec-00_003390.1.6Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3375020..3375163 -
Ec-00_003390.1.5Ec-00_003390.1.5Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3375872..3375919 -
Ec-00_003390.1.4Ec-00_003390.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3376227..3376426 -
Ec-00_003390.1.3Ec-00_003390.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3376731..3376857 -
Ec-00_003390.1.2Ec-00_003390.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3377977..3378297 -
Ec-00_003390.1.1Ec-00_003390.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3379309..3380028 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003390.1CDS:Ec-00_003390.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 3374217..3374426 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_003390.1 ID=Ec-00_003390.1|Name=Ec-00_003390.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=590bp
MLVVDAAFHSPQIDQFPEGTACLLLLLGAAIYLKHLLSSTRWLASRPQRE
NTTLLTLFDTAVVLFSFPASHRIQHASPKLSPNHRFKCIRTFFFFLIFFF
HQYDPTNVRGLHSRERLSLCLQDSSRRKFLNPSCELSLNWNLHAEHFRLE
ARTTRLHSLGRAVVLRPHASWTHPISRLARHVRVGATSRAHRPRSRVERR
SSVPARTFSGGGHKNVSNTRREPCCLLTPLGEPSRTGVRLVFLSGGEVDA
RRRAEMSAAVSHAPASAASAAATRATADVEAPTLDPTRDQLRPGGHATTS
GDAAAVELATDLDAGDAAAPAGSEQPNNTPRGREGSSLPLLSGMAAMMSM
IFILGDLVNKRMLHPVSTGVFLLSVSYCVAMLRRQWASTGGGTREGCNNS
FTKEAREELITYFVFGAGPEGLPTEAGAGAGAGAGKKGNRPKQQERGNGA
SGDELQLLRLVLSYREQPVKVKAAAEEDDPARACDSGEWSTGQACIVCFG
DYEPGDRLARLPCRHVYHAQCIDEWLDRAKLPSCPLCKTDLRHATPPDDP
CRSISTAGGGGTSANAARVGGGSGGGGGERVEFTGDNAV*
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spliced messenger RNA

>Ec-00_003390.1 ID=Ec-00_003390.1|Name=Ec-00_003390.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1770bp|location=Sequence derived from alignment at chr_00:3374217..3380028- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGGTTGTCGATGCTGCCTTCCATAGCCCCCAAATCGATCAATTCCC
AGAGGGCACCGCGTGTCTGCTGCTGCTCCTCGGGGCTGCTATCTATCTAA
AGCATCTTCTCTCCAGTACGCGTTGGCTTGCCTCTCGCCCACAGCGAGAA
AACACAACCCTTCTGACATTGTTTGACACCGCCGTGGTGCTCTTTAGTTT
CCCCGCATCCCACCGAATCCAACATGCCTCCCCAAAGCTCTCCCCAAACC
ACAGATTCAAATGTATACGTACGTTTTTTTTTTTCTTAATTTTTTTTTTT
CATCAATATGACCCAACGAATGTGCGTGGTCTCCACAGCAGAGAGCGGTT
GTCTTTGTGTCTTCAAGACTCGTCACGGAGGAAATTTCTGAATCCATCAT
GTGAACTGTCGCTGAACTGGAACCTTCACGCTGAACATTTTCGTCTCGAA
GCCCGCACCACGAGACTACATTCCCTTGGCCGAGCTGTCGTTCTCCGCCC
ACACGCGAGCTGGACCCATCCGATTTCAAGACTTGCAAGGCACGTACGTG
TGGGAGCTACATCCAGGGCTCATCGTCCACGGTCGAGAGTCGAGAGGAGG
AGCAGCGTTCCCGCAAGAACGTTTTCCGGGGGTGGGCACAAAAACGTGAG
CAATACGCGCCGTGAGCCTTGCTGCCTGCTGACCCCCTTGGGTGAGCCAT
CTCGGACGGGGGTGAGGCTTGTGTTCCTCTCCGGCGGCGAGGTAGACGCA
CGAAGAAGAGCGGAGATGTCGGCGGCTGTGTCCCATGCACCGGCTTCAGC
CGCTTCAGCAGCTGCAACAAGAGCAACTGCAGACGTCGAGGCACCTACTC
TCGATCCCACACGCGACCAACTGCGGCCAGGAGGGCACGCGACAACGTCG
GGAGACGCTGCAGCGGTAGAGCTGGCGACCGACCTGGATGCTGGCGACGC
TGCTGCCCCTGCTGGCAGCGAGCAGCCTAATAACACGCCGCGAGGGCGGG
AAGGATCCAGTCTTCCTCTTCTGTCTGGAATGGCGGCTATGATGTCCATG
ATCTTCATCCTCGGCGACCTCGTGAACAAGCGCATGCTCCATCCTGTTAG
CACCGGGGTGTTTCTGCTGTCGGTGAGCTACTGCGTGGCGATGCTGAGGC
GACAGTGGGCAAGCACCGGCGGAGGCACGCGGGAGGGGTGTAACAACAGC
TTCACCAAGGAGGCGCGAGAGGAGTTGATCACGTACTTCGTGTTCGGTGC
AGGCCCGGAAGGACTGCCAACGGAGGCGGGGGCGGGAGCGGGGGCGGGGG
CGGGAAAGAAGGGAAACCGCCCAAAGCAACAAGAGCGGGGCAACGGTGCA
TCGGGTGACGAGCTTCAGCTACTCCGGCTGGTCCTGAGCTACCGAGAGCA
ACCGGTGAAGGTGAAGGCGGCGGCAGAGGAGGACGACCCGGCCAGGGCTT
GCGACTCGGGAGAGTGGTCGACGGGTCAAGCGTGCATCGTGTGCTTCGGC
GACTACGAGCCCGGAGACCGGTTGGCCCGCCTGCCGTGCCGGCACGTGTA
CCACGCACAGTGCATCGACGAGTGGTTGGACAGGGCGAAACTCCCTAGCT
GTCCGTTGTGCAAGACGGACCTCCGCCATGCAACGCCCCCCGATGATCCC
TGTAGGAGCATCTCTACTGCTGGTGGGGGCGGTACGAGTGCCAATGCTGC
CAGAGTTGGAGGAGGCAGCGGCGGCGGCGGCGGGGAGAGGGTCGAGTTTA
CGGGTGACAACGCCGTGTAA
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protein sequence of Ec-00_003390.1

>Ec-00_003390.1 ID=Ec-00_003390.1|Name=Ec-00_003390.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=590bp
MLVVDAAFHSPQIDQFPEGTACLLLLLGAAIYLKHLLSSTRWLASRPQRE
NTTLLTLFDTAVVLFSFPASHRIQHASPKLSPNHRFKCIRTFFFFLIFFF
HQYDPTNVRGLHSRERLSLCLQDSSRRKFLNPSCELSLNWNLHAEHFRLE
ARTTRLHSLGRAVVLRPHASWTHPISRLARHVRVGATSRAHRPRSRVERR
SSVPARTFSGGGHKNVSNTRREPCCLLTPLGEPSRTGVRLVFLSGGEVDA
RRRAEMSAAVSHAPASAASAAATRATADVEAPTLDPTRDQLRPGGHATTS
GDAAAVELATDLDAGDAAAPAGSEQPNNTPRGREGSSLPLLSGMAAMMSM
IFILGDLVNKRMLHPVSTGVFLLSVSYCVAMLRRQWASTGGGTREGCNNS
FTKEAREELITYFVFGAGPEGLPTEAGAGAGAGAGKKGNRPKQQERGNGA
SGDELQLLRLVLSYREQPVKVKAAAEEDDPARACDSGEWSTGQACIVCFG
DYEPGDRLARLPCRHVYHAQCIDEWLDRAKLPSCPLCKTDLRHATPPDDP
CRSISTAGGGGTSANAARVGGGSGGGGGERVEFTGDNAV*
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mRNA from alignment at chr_00:3374217..3380028-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_003390.1 ID=Ec-00_003390.1|Name=Ec-00_003390.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=5812bp|location=Sequence derived from alignment at chr_00:3374217..3380028- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTTGGTTGTCGATGCTGCCTTCCATAGCCCCCAAATCGATCAATTCCC
AGAGGGCACCGCGTGTCTGCTGCTGCTCCTCGGGGCTGCTATCTATCTAA
AGCATCTTCTCTCCAGTACGCGTTGGCTTGCCTCTCGCCCACAGCGAGAA
AACACAACCCTTCTGACATTGTTTGACACCGCCGTGGTGCTCTTTAGTTT
CCCCGCATCCCACCGAATCCAACATGCCTCCCCAAAGCTCTCCCCAAACC
ACAGATTCAAATGTATACGTACGTTTTTTTTTTTCTTAATTTTTTTTTTT
CATCAATATGACCCAACGAATGTGCGTGGTCTCCACAGCAGAGAGCGGTT
GTCTTTGTGTCTTCAAGACTCGTCACGGAGGAAATTTCTGAATCCATCAT
GTGAACTGTCGCTGAACTGGAACCTTCACGCTGAACATTTTCGTCTCGAA
GCCCGCACCACGAGACTACATTCCCTTGGCCGAGCTGTCGTTCTCCGCCC
ACACGCGAGCTGGACCCATCCGATTTCAAGACTTGCAAGGCACGTACGTG
TGGGAGCTACATCCAGGGCTCATCGTCCACGGTCGAGAGTCGAGAGGAGG
AGCAGCGTTCCCGCAAGAACGTTTTCCGGGGGTGGGCACAAAAACGTGAG
CAATACGCGCCGTGAGCCTTGCTGCCTGCTGACCCCCTTGGGTGAGCCAT
CTCGGACGGGGGTGAGGCTTGTTCTCGAGGAGATATTGTAGTATCAAAGC
AGTGTCAAGCAACAAGACAGAAAGGGGAATCTCACGGAGGACGCACGCTG
CTCTCCGCCTCTTGTCTATTTCTTCTCCGCCAGTCCGCTTCCAGGGGCCG
GAGATTCTCCACCAAAAACAAGCACGCACGGGACAGACAGGGACGATTGT
GTTTTGTACCATTTGTACACACGATCATCTTGGCAGGCAACCCTCACCCA
CGGGCGAATAGGTAGAGGCGAACAGAAGCAGCACAGCGAAGCACAGGCGT
TTTGCCACCACATGCGCTTTGTTTCTGTCTTTTGATGCGCATCAACCAAC
ATCCGCAAAAGCAGAACACATCATTGTTTGGATCGAATCCGGCGCCTGTT
GGTAGCAGACGGACGAGTGGTGTACGTGCAGGCCTGCCATATCGCGCCGC
TCCGAGAGCACAGCGCCACTCCCCACGAACGTACCCTACTTTGGGGTTGT
GAGTTTAAGAGGCGCTGCGCGCAAGGCTCCCCCACCGGTGTTGTTCATCC
TCCCGTTGCTGCATCCATTCAAAGAAACATGCGTACCGCGGACCGTCTCG
ATCTTGGCGAGCGGGCGGGCGGGCAGAGACCGGCAATATTTCGGCCAATC
CGGCCAATCCGGCCAATCGAGATATACCGTGTAGATCAGTGTAGACATCA
CCGCGGCTCGCCTGTCACCTGCCTCCCTGGCGTCGCCACACACGTTTGGC
GCACGTATCACGTAAGCTTCGCTAGAGGCTTGCCGAAAAATATGTAGCCA
GCGCCGCCGACCTACAGCTGTCCCTGTGACCGCCGAACCTCTGTTCGGTA
CAGCACGTTGAATGTACATGTATGGTGCGAAGGTTGAACCTTGAAATTGC
AACGTCCCGATCCCTCCACCCCCACCCGCTCCAACCGCACGCGCTCACGT
TGCTCAAAGATGTAAGTGATTCCCGTCGCCCTCCCTCCCTCCCTGCTACC
GCTGCTGCGCCCAAACAGTATATTTCTGTAGGTGTTCCTCTCCGGCGGCG
AGGTAGACGCACGAAGAAGAGCGGAGATGTCGGCGGCTGTGTCCCATGCA
CCGGCTTCAGCCGCTTCAGCAGCTGCAACAAGAGCAACTGCAGACGTCGA
GGCACCTACTCTCGATCCCACACGCGACCAACTGCGGCCAGGAGGGCACG
CGACAACGTCGGGAGACGCTGCAGCGGTAGAGCTGGCGACCGACCTGGAT
GCTGGCGACGCTGCTGCCCCTGCTGGCAGCGAGCAGCCTAATAACACGCC
GCGAGGGCGGGAAGGATCCAGTCTTCCTCTTCTGTCTGGAATGGCGGCTA
TGGTGCGCTGGCTCTCTCTCTCTCTCTTGTTAGCCCCTCACCGCAATCTC
AGTGGCATTTTTTCGCCTCTCGTCCCATTTCTTCTTGGTACCCAGTCTAC
AGCAGTAGTGCACAGCTACTATATTGGAAAAACCGGCTGCGGCCACACAA
ACAATAGGATGACCTTCCTCTCGTGTTTTTATCTTCAATGTATTGTGCAT
AATACAATTTACTAGTGCTGTACTTATTTTTCCCATCGGGCTCCCCGTAG
AGGCGGAGAGATGGCAACCCCCCTACATAACAGCAGACCGATTTTCAAAG
CTCGATTGTTCCACAACCAAGATTTTGCCAACGCCAAAATGTTGCTTCTG
GAAACTTCTCGTCGAGGGCTTTCCGTGGAGTTATCGAGTTCTTCCCGCAA
CCCCTTTGGTTGTGGAGCAATCGAGGTTTGAAATTCGATCTACTGTTGTA
GGGGGGGCGCCATCTCTCCGCCTCTTACGGGTACATGTAGTCCAACGATA
GCTTGACAAGTAGTCTACTGCTGTACTCTTGAGCATTCCCCGGAAATCTC
AACGACGCAACGACGTTTTGTCTTGTAAAATATCTAAAATAATGCAGTAG
TTTTCCAGGCAAGAAATTGCCGGTTCCAACACTCCTTACCTATACGGAGG
CAATGAATGTCGATTTGAGCGTTGCCTTGGGTCGACTTTGTTGGAACGAA
GGCTGCCCATACGCCTTGCCTCGGTGCTCCAGGGTTTGTGCGGGATCATC
ATCCAATCAGGCGTCGTGTACCGCCTGTTGTACCTGTCCGAGCGATACCG
TGTGTTCCTCCTGCTGTTGCGCAGAGGTCAATGTCCAACGTTTTGTTCTT
CGTAGCCTCGGTGCCACATTGTGCACATGTAGTACCAAGACCGTTGAAAA
ACATTTCAACATCGCGGCATCATTGGAGATTTACCAGCATCACGCGTTTG
CCCCACACACACACGTACATTGAACAGCCGATACGCCGATACGTGAGACA
AAGAATTCCCGGTATTTTGTGTTGTCTCTATCGATGGTGCGCCGTCGTCT
ATGGCTTTTTTCGCGCTCGCCCACGCTTACATGCGTCGTTTCCTCCGTCT
CCCCGCTCTTGCCGAGAACAGATGTCCATGATCTTCATCCTCGGCGACCT
CGTGAACAAGCGCATGCTCCATCCTGTTAGCACCGGGGTGTTTCTGCTGT
CGGTGAGCTACTGCGTGGCGATGCTGAGGCGACAGTGGGCAAGCACCGGT
GAGTCAGGCGGTGCGATGGAACACCAGGTAGATGACATCAATCTTGACAT
ACTTGATCTTGTGTGTGTTGGGAAGGTGGCCTTTCACCAGGGAAGGCGCC
CAAGTCTGTTGGACCAGTACGGATACTAGGAGGTACTGAGAAGAGACCAG
CCAGATCTTTACTTTTTATGCGACAACAGCAATAACAACAACAACAACAA
CAACAACAACAGACTGCGTCCCTCCGCTCCGCGCAGCATTTTTTTTGTGA
GACAACCGATACTATATATTTTTTTTTTTCGGTGCCGACCTACTATACAC
AGGCGGAGGCACGCGGGAGGGGTGTAACAACAGCTTCACCAAGGAGGCGC
GAGAGGAGTTGATCACGTACTTCGTGTTCGGTGCAGGCCCGGAAGGACTG
CCAACGGAGGCGGGGGCGGGAGCGGGGGCGGGGGCGGGAAAGAAGGGAAA
CCGCCCAAAGCAACAAGAGCGGGGCAACGGTGCATCGGGTGACGAGCTTC
AGGTTAGCAGGACCAGCAGCAGGAGGTGGCGAAGGGAGGGCCAGCGCAGC
AGCGGTGGTGGCGACGACGACACTGTAGGAGGTACCGGCGTCAGTGGCGG
CGGTGCAGCGCGGAACGGTCGCATCGACGCCAACAATGCGGATACCGGCG
GCTCGCTTTCCGCGAACACACCGGCGCCTTCCACAGGGCCTTGTTCTCCG
GCACCATTAGAAGAAGTTCTCGATGGCGATGCTGCTACTGCTGCTACCGC
CGAGGACGCTGCTGTGACTGCCTCCCCCGGACATGCAACAGCTGCTGTCA
CCGCCGCAGCTACTCCGGCTGGTCCTGAGCTACCGAGAGCAACCGGTGAA
GGTGAAGGTGAGAGGCGGAGGAGGGAGGGTTGGACACATTGGTATCGTTG
AAGAGTTGCGATCGTGGTGGCCGTATGCTTTCGTGTTGCCTCTCTCTGCA
TTGTCTTTCGAGCATCAACAGGCTTGAGGAGGAGTTCTCCCCCCCCCGCC
GCACCCCGAGTCGAATATGATTGCGGCTCCGAGTGCGAAGACCGTGTTCA
TGTAGTCGTGGAATGTCGGCTGTGCAAGAAGGAGAGGGAAGTGTACATGA
CGGAGCTGGCGAAAGTAGAAGGAAAATGCAGGGAGGTGTTTGAGACATGG
AATAGCCAGGATAAGGCGTAAAATAGCTGTACTGTGGTATAGGAAATGGG
TTGAAAAGGCGGGAACTGATATCAGTAGGATAGATAGACTAGGGAACATT
TTTGAGCCACCTTTGGCAAAGTAGAAAGGAACGATTGGTCATCGGTGATC
GGTCCTGTGGGAACAACTCCGTCCTCTCGAGGACGCGTGGTCAATTGTCT
AACCGGTAAGGCATGCAAAACATAAGAGTACGCCCCCCCGCCCCCGGAAG
AAGTGCAAGTTGGGCACTCCATGCACCGCAAGAAGAAGCTCAACTACACG
CGTGTAAAAACGAACAACCAGAGAACAAGGTCTAAATATCAGGACGGAAC
TCTCCTTGCGCACGCTCCTTCAAACAGATGTAGCAGCAGAAGAAGAAGCG
TCAGCAGCGGCGAAGGCGGCGGCAGAGGAGGACGACCCGGCCAGGGCTTG
CGACTCGGGAGAGTGGTCGACGGGTCAAGCGTGCATCGTGTGCTTCGGCG
ACTACGAGCCCGGAGACCGGTTGGCCCGCCTGCCGTGCCGGCACGTGTAC
CACGCACAGGTATATATCATTCATCTGCGCGCGCGCGTGTGTATGTATGT
GTGTCCATTTTGTTAGCATCGACCGAGCTAACTGGCTGATCGATGAAAAA
ACGTCAGTGTCAGTGCGATTGAAAGGTATGTGTGTGTTCGTGTGTGTTTG
TTTGCCGCTAATATTTCGTGTAATTTCTACTTGTAGTCGATTACGGCGGG
GATCGCGCGAGGCGATCCAAGGTCGTGTTTCGAACCGCACGGACTTGCTC
TTGTCGTAGGTGTCGGGGGGGGGGCACGCGACAGGCAGTCGACGGTGTTA
AGTGGTAATCTCGAGTTGTACCTTTGTGTGCATCAAGTACGGTTGGGAGG
GCAGCGGGGTACCTCTAATGACAGTAGTACCACAATAATGTTTGTAATTC
TAAATCTACCATTAGCTCTATCCCTACATCTGTGCAGTTCCCGTGACAGA
TTATCTACGACTGCGTGGTGTGCACGCTTTCGGCGGGAGAAAAGCGCCAC
CAAAGTTTACACCCGAACCCACTCTCCGGTACCAAGCTGAACCCCCCCAC
CCTGCGTTTTACCCCCCGGGCATCGAAACTCCACGCCAATCGCCACCATC
AGTGCATCGACGAGTGGTTGGACAGGGCGAAACTCCCTAGCTGTCCGTTG
TGCAAGACGGACCTCCGCCATGCAACGCCCCCCGATGATCCCTGTAGGAG
CATCTCTACTGCTGGTGGGGGCGGTACGAGTGCCAATGCTGCCAGAGTTG
GAGGAGGCAGCGGCGGCGGCGGCGGGGAGAGGGTCGAGTTTACGGGTGAC
AACGCCGTGTAA
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Coding sequence (CDS) from alignment at chr_00:3374217..3380028-

>Ec-00_003390.1 ID=Ec-00_003390.1|Name=Ec-00_003390.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=1770bp|location=Sequence derived from alignment at chr_00:3374217..3380028- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTTGGTTGTCGATGCTGCCTTCCATAGCCCCCAAATCGATCAATTCCC
AGAGGGCACCGCGTGTCTGCTGCTGCTCCTCGGGGCTGCTATCTATCTAA
AGCATCTTCTCTCCAGTACGCGTTGGCTTGCCTCTCGCCCACAGCGAGAA
AACACAACCCTTCTGACATTGTTTGACACCGCCGTGGTGCTCTTTAGTTT
CCCCGCATCCCACCGAATCCAACATGCCTCCCCAAAGCTCTCCCCAAACC
ACAGATTCAAATGTATACGTACGTTTTTTTTTTTCTTAATTTTTTTTTTT
CATCAATATGACCCAACGAATGTGCGTGGTCTCCACAGCAGAGAGCGGTT
GTCTTTGTGTCTTCAAGACTCGTCACGGAGGAAATTTCTGAATCCATCAT
GTGAACTGTCGCTGAACTGGAACCTTCACGCTGAACATTTTCGTCTCGAA
GCCCGCACCACGAGACTACATTCCCTTGGCCGAGCTGTCGTTCTCCGCCC
ACACGCGAGCTGGACCCATCCGATTTCAAGACTTGCAAGGCACGTACGTG
TGGGAGCTACATCCAGGGCTCATCGTCCACGGTCGAGAGTCGAGAGGAGG
AGCAGCGTTCCCGCAAGAACGTTTTCCGGGGGTGGGCACAAAAACGTGAG
CAATACGCGCCGTGAGCCTTGCTGCCTGCTGACCCCCTTGGGTGAGCCAT
CTCGGACGGGGGTGAGGCTTGTGTTCCTCTCCGGCGGCGAGGTAGACGCA
CGAAGAAGAGCGGAGATGTCGGCGGCTGTGTCCCATGCACCGGCTTCAGC
CGCTTCAGCAGCTGCAACAAGAGCAACTGCAGACGTCGAGGCACCTACTC
TCGATCCCACACGCGACCAACTGCGGCCAGGAGGGCACGCGACAACGTCG
GGAGACGCTGCAGCGGTAGAGCTGGCGACCGACCTGGATGCTGGCGACGC
TGCTGCCCCTGCTGGCAGCGAGCAGCCTAATAACACGCCGCGAGGGCGGG
AAGGATCCAGTCTTCCTCTTCTGTCTGGAATGGCGGCTATGATGTCCATG
ATCTTCATCCTCGGCGACCTCGTGAACAAGCGCATGCTCCATCCTGTTAG
CACCGGGGTGTTTCTGCTGTCGGTGAGCTACTGCGTGGCGATGCTGAGGC
GACAGTGGGCAAGCACCGGCGGAGGCACGCGGGAGGGGTGTAACAACAGC
TTCACCAAGGAGGCGCGAGAGGAGTTGATCACGTACTTCGTGTTCGGTGC
AGGCCCGGAAGGACTGCCAACGGAGGCGGGGGCGGGAGCGGGGGCGGGGG
CGGGAAAGAAGGGAAACCGCCCAAAGCAACAAGAGCGGGGCAACGGTGCA
TCGGGTGACGAGCTTCAGCTACTCCGGCTGGTCCTGAGCTACCGAGAGCA
ACCGGTGAAGGTGAAGGCGGCGGCAGAGGAGGACGACCCGGCCAGGGCTT
GCGACTCGGGAGAGTGGTCGACGGGTCAAGCGTGCATCGTGTGCTTCGGC
GACTACGAGCCCGGAGACCGGTTGGCCCGCCTGCCGTGCCGGCACGTGTA
CCACGCACAGTGCATCGACGAGTGGTTGGACAGGGCGAAACTCCCTAGCT
GTCCGTTGTGCAAGACGGACCTCCGCCATGCAACGCCCCCCGATGATCCC
TGTAGGAGCATCTCTACTGCTGGTGGGGGCGGTACGAGTGCCAATGCTGC
CAGAGTTGGAGGAGGCAGCGGCGGCGGCGGCGGGGAGAGGGTCGAGTTTA
CGGGTGACAACGCCGTGTAA
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Synonyms
The feature 'Ec-00_003390.1' has the following synonyms
Synonym
Esi0217_0018
Esi_0217_0018