Ec-00_003340.2 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_003340.2
Unique NameEc-00_003340.2
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length110
Homology
[Close]
BLAST of Ec-00_003340.2 vs. uniprot
Match: D7FRP5_ECTSI (Transthyretin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRP5_ECTSI)

HSP 1 Score: 152 bits (385), Expect = 2.700e-41
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 3 
Query:    3 AIERLFPVCVFQNLSKATYRVTFDTEAYFETVGSRCFYPEVAVVFRVEEPEEHYHIPLLISPFGYSTYRGS 215
            AIERLFPVCVFQNLSKATYRVTFDTEAYFETVGSRCFYPEVAVVFRVEEPEEHYHIPLLISPFGYSTYRGS
Sbjct:    2 AIERLFPVCVFQNLSKATYRVTFDTEAYFETVGSRCFYPEVAVVFRVEEPEEHYHIPLLISPFGYSTYRGS 72
[Close]
BLAST of Ec-00_003340.2 vs. uniprot
Match: A0A6H5JTL5_9PHAE (5-hydroxyisourate hydrolase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTL5_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 1.310e-29
Identity = 56/59 (94.92%), Postives = 57/59 (96.61%), Query Frame = 3 
Query:   39 NLSKATYRVTFDTEAYFETVGSRCFYPEVAVVFRVEEPEEHYHIPLLISPFGYSTYRGS 215
             LSKATYRVTFDTEAYFET GSRCFYPEVA+VFRVEEPEEHYHIPLLISPFGYSTYRGS
Sbjct:   95 KLSKATYRVTFDTEAYFETAGSRCFYPEVAIVFRVEEPEEHYHIPLLISPFGYSTYRGS 153
[Close]
BLAST of Ec-00_003340.2 vs. uniprot
Match: A0A352EVB3_9BACT (5-hydroxyisourate hydrolase n=2 Tax=Blastocatellia bacterium TaxID=2052146 RepID=A0A352EVB3_9BACT)

HSP 1 Score: 97.4 bits (241), Expect = 1.330e-20
Identity = 41/62 (66.13%), Postives = 51/62 (82.26%), Query Frame = 3 
Query:   30 VFQNLSKATYRVTFDTEAYFETVGSRCFYPEVAVVFRVEEPEEHYHIPLLISPFGYSTYRGS 215
            V + + + TYR+ FDTEAYF ++   CFYP+VAVVFRVE+  +HYHIPLL+SPFGYSTYRGS
Sbjct:   53 VGEPIERGTYRLVFDTEAYFSSLNVECFYPQVAVVFRVEDAAQHYHIPLLLSPFGYSTYRGS 114
[Close]
BLAST of Ec-00_003340.2 vs. uniprot
Match: A0A2G4SH33_RHIZD (5-hydroxyisourate hydrolase n=4 Tax=Rhizopus TaxID=4842 RepID=A0A2G4SH33_RHIZD)

HSP 1 Score: 92.8 bits (229), Expect = 6.380e-19
Identity = 36/59 (61.02%), Postives = 48/59 (81.36%), Query Frame = 3 
Query:   39 NLSKATYRVTFDTEAYFETVGSRCFYPEVAVVFRVEEPEEHYHIPLLISPFGYSTYRGS 215
             + K  YRVTF+T+AYF+ +G  CFYP V +VF +++PE+HYHIPLLISP+ Y+TYRGS
Sbjct:   60 KVEKGIYRVTFETQAYFQKLGQACFYPYVQIVFEIDQPEQHYHIPLLISPYSYTTYRGS 118
[Close]
BLAST of Ec-00_003340.2 vs. uniprot
Match: A0A7S0W1Y3_9CRYP (5-hydroxyisourate hydrolase n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0W1Y3_9CRYP)

HSP 1 Score: 92.4 bits (228), Expect = 1.650e-18
Identity = 37/56 (66.07%), Postives = 45/56 (80.36%), Query Frame = 3 
Query:   48 KATYRVTFDTEAYFETVGSRCFYPEVAVVFRVEEPEEHYHIPLLISPFGYSTYRGS 215
            + TYR TFDT AYF  +G +CFYP V ++F +E P EHYHIPLL+SP+GYSTYRGS
Sbjct:   86 RGTYRCTFDTAAYFSKMGGKCFYPFVPIIFVIENPSEHYHIPLLLSPYGYSTYRGS 141
[Close]
BLAST of Ec-00_003340.2 vs. uniprot
Match: A0A367K935_RHIST (5-hydroxyisourate hydrolase n=1 Tax=Rhizopus stolonifer TaxID=4846 RepID=A0A367K935_RHIST)

HSP 1 Score: 91.3 bits (225), Expect = 2.160e-18
Identity = 37/59 (62.71%), Postives = 46/59 (77.97%), Query Frame = 3 
Query:   39 NLSKATYRVTFDTEAYFETVGSRCFYPEVAVVFRVEEPEEHYHIPLLISPFGYSTYRGS 215
             + K  YRVTF+T+ YFE +G  CFYP V +VF + EPE+HYHIPLLISP+ Y+TYRGS
Sbjct:   59 KVQKGIYRVTFETKKYFEKLGQACFYPYVQIVFELNEPEQHYHIPLLISPYSYTTYRGS 117
[Close]
BLAST of Ec-00_003340.2 vs. uniprot
Match: A0A7S1DRU5_HEMAN (5-hydroxyisourate hydrolase n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DRU5_HEMAN)

HSP 1 Score: 91.7 bits (226), Expect = 3.240e-18
Identity = 37/56 (66.07%), Postives = 45/56 (80.36%), Query Frame = 3 
Query:   48 KATYRVTFDTEAYFETVGSRCFYPEVAVVFRVEEPEEHYHIPLLISPFGYSTYRGS 215
            K TY+ TFDT +YF  +G +CFYP V ++F +E P EHYHIPLL+SPFGYSTYRGS
Sbjct:   88 KGTYKCTFDTASYFARMGGKCFYPFVPIIFVIEAPSEHYHIPLLLSPFGYSTYRGS 143
[Close]
BLAST of Ec-00_003340.2 vs. uniprot
Match: I1BJ72_RHIO9 (5-hydroxyisourate hydrolase n=1 Tax=Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880) TaxID=246409 RepID=I1BJ72_RHIO9)

HSP 1 Score: 90.5 bits (223), Expect = 4.150e-18
Identity = 36/59 (61.02%), Postives = 46/59 (77.97%), Query Frame = 3 
Query:   39 NLSKATYRVTFDTEAYFETVGSRCFYPEVAVVFRVEEPEEHYHIPLLISPFGYSTYRGS 215
             + K  YRVTF+T+ YFE +G  CFYP V +VF + +PE+HYHIPLLISP+ Y+TYRGS
Sbjct:   60 KVEKGIYRVTFETKEYFEKLGQACFYPYVQIVFEITQPEQHYHIPLLISPYSYTTYRGS 118
[Close]
BLAST of Ec-00_003340.2 vs. uniprot
Match: A0A368T1H0_9ACTN (5-hydroxyisourate hydrolase n=1 Tax=Marinitenerispora sediminis TaxID=1931232 RepID=A0A368T1H0_9ACTN)

HSP 1 Score: 90.1 bits (222), Expect = 4.660e-18
Identity = 38/60 (63.33%), Postives = 45/60 (75.00%), Query Frame = 3 
Query:   36 QNLSKATYRVTFDTEAYFETVGSRCFYPEVAVVFRVEEPEEHYHIPLLISPFGYSTYRGS 215
            + L+   YR+ FDTE YF   G R FYPEVAVVF + + E HYH+PLL+SPFGYSTYRGS
Sbjct:   52 RRLAAGVYRLVFDTEGYFRREGRRSFYPEVAVVFEIADEEAHYHVPLLLSPFGYSTYRGS 111
[Close]
BLAST of Ec-00_003340.2 vs. uniprot
Match: A0A1C7NMU4_9FUNG (5-hydroxyisourate hydrolase n=1 Tax=Choanephora cucurbitarum TaxID=101091 RepID=A0A1C7NMU4_9FUNG)

HSP 1 Score: 90.5 bits (223), Expect = 6.820e-18
Identity = 36/59 (61.02%), Postives = 45/59 (76.27%), Query Frame = 3 
Query:   39 NLSKATYRVTFDTEAYFETVGSRCFYPEVAVVFRVEEPEEHYHIPLLISPFGYSTYRGS 215
            N  K  YR+TF+T+AYF  +G  CFYP V +VF +  PE+HYHIPLLISP+ Y+TYRGS
Sbjct:   78 NAEKGIYRITFETKAYFSRMGQECFYPYVQIVFELANPEQHYHIPLLISPYSYTTYRGS 136
The following BLAST results are available for this feature:
BLAST of Ec-00_003340.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRP5_ECTSI2.700e-41100.00Transthyretin n=1 Tax=Ectocarpus siliculosus TaxID... [more]
A0A6H5JTL5_9PHAE1.310e-2994.925-hydroxyisourate hydrolase n=1 Tax=Ectocarpus sp.... [more]
A0A352EVB3_9BACT1.330e-2066.135-hydroxyisourate hydrolase n=2 Tax=Blastocatellia... [more]
A0A2G4SH33_RHIZD6.380e-1961.025-hydroxyisourate hydrolase n=4 Tax=Rhizopus TaxID... [more]
A0A7S0W1Y3_9CRYP1.650e-1866.075-hydroxyisourate hydrolase n=1 Tax=Hemiselmis tep... [more]
A0A367K935_RHIST2.160e-1862.715-hydroxyisourate hydrolase n=1 Tax=Rhizopus stolo... [more]
A0A7S1DRU5_HEMAN3.240e-1866.075-hydroxyisourate hydrolase n=2 Tax=Hemiselmis and... [more]
I1BJ72_RHIO94.150e-1861.025-hydroxyisourate hydrolase n=1 Tax=Rhizopus delem... [more]
A0A368T1H0_9ACTN4.660e-1863.335-hydroxyisourate hydrolase n=1 Tax=Marinitenerisp... [more]
A0A1C7NMU4_9FUNG6.820e-1861.025-hydroxyisourate hydrolase n=1 Tax=Choanephora cu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:3332915..3334608 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length1694
Hectar predicted targeting categorysignal peptide
Gene idEc-00_003340.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_003340Ec-00_003340Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 3332915..3334608 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003340.2.1Ec-00_003340.2.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3332915..3334608 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0033405UTR:Ec-00_003340.2Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_00 3332915..3333808 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003340.2CDS:Ec-00_003340.2Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 3333809..3334138 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0033403UTR:Ec-00_003340.2Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_00 3334139..3334608 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003340.2Ec-00_003340.2Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 3333809..3334138 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_003340.2 ID=Ec-00_003340.2|Name=Ec-00_003340.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=110bp
MGVTVFCSVLGIFSIFSFGEAIVSENQREILFRITNCKTNNYHFRARAGN
IYSGAVAKCPQSLSFAIFAVLGLLSSTVLVPVHEGLHRKCLPGYRHFAFV
SSMADATFP*
back to top

spliced messenger RNA

>Ec-00_003340.2 ID=Ec-00_003340.2|Name=Ec-00_003340.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1694bp|location=Sequence derived from alignment at chr_00:3332915..3334608+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCATTGAACGTCTTTTCCCTGTTTGCGTCTTTCAGAACCTGAGCAA
GGCCACCTACCGCGTGACGTTCGACACCGAGGCCTACTTCGAGACGGTGG
GGTCCCGCTGCTTTTACCCGGAGGTGGCGGTCGTGTTCCGCGTGGAGGAA
CCCGAGGAGCACTACCACATCCCCCTCCTTATCAGCCCCTTTGGCTACTC
CACCTACCGAGGGAGCTAGTAGAAAACGTTTGTATTTTGTAGCCTCTTGT
CATCCCGCCCCACTATATGTAATGGTCGTCGAAGTTTGCCGTTCTCACTG
CACCTGTACAGTGGGCGTACGTATAAATAAGAGAGTGCGACCATACCGAT
GTTCTGGTACAGCAACGAGCCAGTCCAACCCACAACCGCGCCATCTCCTT
TTAAAGCTGCCTCACCTACTGGCGGTGTGGCCAGAAGGACGACTGCCCCC
AGCTGCAATGGTGGTTTTCACCGCAGCAAGGCGACTTGGTTGGATCTTGC
GAGTCTGGGTTAACACATGCATAGTTTCGTGGAGCGTGGATGTTGTATAG
AATAATTTACGGGTTGGACGCGTCTTTTCATATAGTATGTTGCGTCTTTA
GCAAGCGGCTTTCTGGTGGCGAAAGCCATGTATTCTTCAATGTTGACTTC
GAAGCACGCGCGCCCGTGCAGTTTTTTTGGGGGGGTGGGTTGCCGCTGCT
GCACAGCCGATTTCAAGTCGGAAGCATTTGAGTGAAAGGTCGTATTCAGT
GGTGTGCGCAGAATTTGGGTTTGGACGTACGAGTCATCTACCTGAGGTAG
GTTTGGTTTGTACGATAGCTTGCAAATACGCTGCCACCCACCCTCTCCTG
TTCCTTGAAAATGTTTTGATCTTCAGGGTTTGTTTGATTTTTCCATGGGC
GTGACTGTGTTTTGTTCTGTTTTGGGCATTTTTTCTATTTTCAGTTTTGG
AGAGGCGATAGTATCAGAAAACCAGAGGGAAATTTTATTCAGGATCACAA
ACTGCAAGACCAATAATTATCATTTCCGTGCACGTGCAGGCAATATATAT
TCGGGGGCTGTTGCCAAATGCCCCCAGTCATTGTCTTTTGCTATTTTTGC
TGTGTTGGGCCTGCTGAGCAGTACTGTTCTGGTGCCGGTACACGAGGGTT
TACACCGCAAGTGTCTGCCCGGGTACCGGCATTTCGCGTTCGTCTCTAGC
ATGGCTGATGCGACTTTTCCTTAGCACATAAGTGGTGGTACTCTGGCAGC
CATCTGATGCAAAGAGCTACGATCTTACCAATGTTCTGGCACAGCGATGA
GCCGGCCCCTCTCGGGTGCTCCACCTAGCTGGAGACGAGCAAGACGTGGC
ATTTTTGTGCGCACCTCGCAACCGCGCAATCTCTTTCTAAGGCTGCCTCG
CCTACTGGCGGTGTGGCCAGAAGGACGACTGGCCCAGCTGCAGTGGCGGT
CTTCACCGCAGCAGGGCGACTTGTTTGCATCTTGCGAGTCTGAGTTGAAA
TGTGCACAGTGTCGTGGAGCGCGGGTGTTGTATGGAATAGTTTACGAGTT
GGACGCGTCTTTTGGTTGATATACAAAAAAACTTTTCTTTTAAAATTGTA
TAGCTAGCAAGCGGCTTTGTGGTGGCAAAATTATTGTTCAATGTTGGCTT
CGAAGCACACGCGCCCTTGCAGGTTTTGGGGGGTGAGTTGTCAC
back to top

protein sequence of Ec-00_003340.2

>Ec-00_003340.2 ID=Ec-00_003340.2|Name=Ec-00_003340.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=110bp
MGVTVFCSVLGIFSIFSFGEAIVSENQREILFRITNCKTNNYHFRARAGN
IYSGAVAKCPQSLSFAIFAVLGLLSSTVLVPVHEGLHRKCLPGYRHFAFV
SSMADATFP*
back to top

mRNA from alignment at chr_00:3332915..3334608+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_003340.2 ID=Ec-00_003340.2|Name=Ec-00_003340.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1694bp|location=Sequence derived from alignment at chr_00:3332915..3334608+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGCCATTGAACGTCTTTTCCCTGTTTGCGTCTTTCAGAACCTGAGCAA
GGCCACCTACCGCGTGACGTTCGACACCGAGGCCTACTTCGAGACGGTGG
GGTCCCGCTGCTTTTACCCGGAGGTGGCGGTCGTGTTCCGCGTGGAGGAA
CCCGAGGAGCACTACCACATCCCCCTCCTTATCAGCCCCTTTGGCTACTC
CACCTACCGAGGGAGCTAGTAGAAAACGTTTGTATTTTGTAGCCTCTTGT
CATCCCGCCCCACTATATGTAATGGTCGTCGAAGTTTGCCGTTCTCACTG
CACCTGTACAGTGGGCGTACGTATAAATAAGAGAGTGCGACCATACCGAT
GTTCTGGTACAGCAACGAGCCAGTCCAACCCACAACCGCGCCATCTCCTT
TTAAAGCTGCCTCACCTACTGGCGGTGTGGCCAGAAGGACGACTGCCCCC
AGCTGCAATGGTGGTTTTCACCGCAGCAAGGCGACTTGGTTGGATCTTGC
GAGTCTGGGTTAACACATGCATAGTTTCGTGGAGCGTGGATGTTGTATAG
AATAATTTACGGGTTGGACGCGTCTTTTCATATAGTATGTTGCGTCTTTA
GCAAGCGGCTTTCTGGTGGCGAAAGCCATGTATTCTTCAATGTTGACTTC
GAAGCACGCGCGCCCGTGCAGTTTTTTTGGGGGGGTGGGTTGCCGCTGCT
GCACAGCCGATTTCAAGTCGGAAGCATTTGAGTGAAAGGTCGTATTCAGT
GGTGTGCGCAGAATTTGGGTTTGGACGTACGAGTCATCTACCTGAGGTAG
GTTTGGTTTGTACGATAGCTTGCAAATACGCTGCCACCCACCCTCTCCTG
TTCCTTGAAAATGTTTTGATCTTCAGGGTTTGTTTGATTTTTCCATGGGC
GTGACTGTGTTTTGTTCTGTTTTGGGCATTTTTTCTATTTTCAGTTTTGG
AGAGGCGATAGTATCAGAAAACCAGAGGGAAATTTTATTCAGGATCACAA
ACTGCAAGACCAATAATTATCATTTCCGTGCACGTGCAGGCAATATATAT
TCGGGGGCTGTTGCCAAATGCCCCCAGTCATTGTCTTTTGCTATTTTTGC
TGTGTTGGGCCTGCTGAGCAGTACTGTTCTGGTGCCGGTACACGAGGGTT
TACACCGCAAGTGTCTGCCCGGGTACCGGCATTTCGCGTTCGTCTCTAGC
ATGGCTGATGCGACTTTTCCTTAGCACATAAGTGGTGGTACTCTGGCAGC
CATCTGATGCAAAGAGCTACGATCTTACCAATGTTCTGGCACAGCGATGA
GCCGGCCCCTCTCGGGTGCTCCACCTAGCTGGAGACGAGCAAGACGTGGC
ATTTTTGTGCGCACCTCGCAACCGCGCAATCTCTTTCTAAGGCTGCCTCG
CCTACTGGCGGTGTGGCCAGAAGGACGACTGGCCCAGCTGCAGTGGCGGT
CTTCACCGCAGCAGGGCGACTTGTTTGCATCTTGCGAGTCTGAGTTGAAA
TGTGCACAGTGTCGTGGAGCGCGGGTGTTGTATGGAATAGTTTACGAGTT
GGACGCGTCTTTTGGTTGATATACAAAAAAACTTTTCTTTTAAAATTGTA
TAGCTAGCAAGCGGCTTTGTGGTGGCAAAATTATTGTTCAATGTTGGCTT
CGAAGCACACGCGCCCTTGCAGGTTTTGGGGGGTGAGTTGTCAC
back to top

Coding sequence (CDS) from alignment at chr_00:3332915..3334608+

>Ec-00_003340.2 ID=Ec-00_003340.2|Name=Ec-00_003340.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=330bp|location=Sequence derived from alignment at chr_00:3332915..3334608+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGGCGTGACTGTGTTTTGTTCTGTTTTGGGCATTTTTTCTATTTTCAG
TTTTGGAGAGGCGATAGTATCAGAAAACCAGAGGGAAATTTTATTCAGGA
TCACAAACTGCAAGACCAATAATTATCATTTCCGTGCACGTGCAGGCAAT
ATATATTCGGGGGCTGTTGCCAAATGCCCCCAGTCATTGTCTTTTGCTAT
TTTTGCTGTGTTGGGCCTGCTGAGCAGTACTGTTCTGGTGCCGGTACACG
AGGGTTTACACCGCAAGTGTCTGCCCGGGTACCGGCATTTCGCGTTCGTC
TCTAGCATGGCTGATGCGACTTTTCCTTAG
back to top
Synonyms
The feature 'Ec-00_003340.2' has the following synonyms
Synonym
Esi0217_0011
Esi_0217_0011