Ec-00_003340.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_003340.1
Unique NameEc-00_003340.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length73
Homology
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BLAST of Ec-00_003340.1 vs. uniprot
Match: D7FRP5_ECTSI (Transthyretin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRP5_ECTSI)

HSP 1 Score: 154 bits (390), Expect = 6.710e-48
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 1 
Query:    1 MAIERLFPVCVFQNLSKATYRVTFDTEAYFETVGSRCFYPEVAVVFRVEEPEEHYHIPLLISPFGYSTYRGS 216
            MAIERLFPVCVFQNLSKATYRVTFDTEAYFETVGSRCFYPEVAVVFRVEEPEEHYHIPLLISPFGYSTYRGS
Sbjct:    1 MAIERLFPVCVFQNLSKATYRVTFDTEAYFETVGSRCFYPEVAVVFRVEEPEEHYHIPLLISPFGYSTYRGS 72
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BLAST of Ec-00_003340.1 vs. uniprot
Match: A0A6H5JTL5_9PHAE (5-hydroxyisourate hydrolase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTL5_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 1.180e-34
Identity = 56/59 (94.92%), Postives = 57/59 (96.61%), Query Frame = 1 
Query:   40 NLSKATYRVTFDTEAYFETVGSRCFYPEVAVVFRVEEPEEHYHIPLLISPFGYSTYRGS 216
             LSKATYRVTFDTEAYFET GSRCFYPEVA+VFRVEEPEEHYHIPLLISPFGYSTYRGS
Sbjct:   95 KLSKATYRVTFDTEAYFETAGSRCFYPEVAIVFRVEEPEEHYHIPLLISPFGYSTYRGS 153
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BLAST of Ec-00_003340.1 vs. uniprot
Match: A0A352EVB3_9BACT (5-hydroxyisourate hydrolase n=2 Tax=Blastocatellia bacterium TaxID=2052146 RepID=A0A352EVB3_9BACT)

HSP 1 Score: 97.4 bits (241), Expect = 1.180e-24
Identity = 41/62 (66.13%), Postives = 51/62 (82.26%), Query Frame = 1 
Query:   31 VFQNLSKATYRVTFDTEAYFETVGSRCFYPEVAVVFRVEEPEEHYHIPLLISPFGYSTYRGS 216
            V + + + TYR+ FDTEAYF ++   CFYP+VAVVFRVE+  +HYHIPLL+SPFGYSTYRGS
Sbjct:   53 VGEPIERGTYRLVFDTEAYFSSLNVECFYPQVAVVFRVEDAAQHYHIPLLLSPFGYSTYRGS 114
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BLAST of Ec-00_003340.1 vs. uniprot
Match: A0A2G4SH33_RHIZD (5-hydroxyisourate hydrolase n=4 Tax=Rhizopus TaxID=4842 RepID=A0A2G4SH33_RHIZD)

HSP 1 Score: 92.8 bits (229), Expect = 8.820e-23
Identity = 36/59 (61.02%), Postives = 48/59 (81.36%), Query Frame = 1 
Query:   40 NLSKATYRVTFDTEAYFETVGSRCFYPEVAVVFRVEEPEEHYHIPLLISPFGYSTYRGS 216
             + K  YRVTF+T+AYF+ +G  CFYP V +VF +++PE+HYHIPLLISP+ Y+TYRGS
Sbjct:   60 KVEKGIYRVTFETQAYFQKLGQACFYPYVQIVFEIDQPEQHYHIPLLISPYSYTTYRGS 118
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BLAST of Ec-00_003340.1 vs. uniprot
Match: A0A7S0W1Y3_9CRYP (5-hydroxyisourate hydrolase n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0W1Y3_9CRYP)

HSP 1 Score: 92.4 bits (228), Expect = 2.320e-22
Identity = 37/56 (66.07%), Postives = 45/56 (80.36%), Query Frame = 1 
Query:   49 KATYRVTFDTEAYFETVGSRCFYPEVAVVFRVEEPEEHYHIPLLISPFGYSTYRGS 216
            + TYR TFDT AYF  +G +CFYP V ++F +E P EHYHIPLL+SP+GYSTYRGS
Sbjct:   86 RGTYRCTFDTAAYFSKMGGKCFYPFVPIIFVIENPSEHYHIPLLLSPYGYSTYRGS 141
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BLAST of Ec-00_003340.1 vs. uniprot
Match: A0A367K935_RHIST (5-hydroxyisourate hydrolase n=1 Tax=Rhizopus stolonifer TaxID=4846 RepID=A0A367K935_RHIST)

HSP 1 Score: 91.3 bits (225), Expect = 3.480e-22
Identity = 37/59 (62.71%), Postives = 46/59 (77.97%), Query Frame = 1 
Query:   40 NLSKATYRVTFDTEAYFETVGSRCFYPEVAVVFRVEEPEEHYHIPLLISPFGYSTYRGS 216
             + K  YRVTF+T+ YFE +G  CFYP V +VF + EPE+HYHIPLLISP+ Y+TYRGS
Sbjct:   59 KVQKGIYRVTFETKKYFEKLGQACFYPYVQIVFELNEPEQHYHIPLLISPYSYTTYRGS 117
[Close]
BLAST of Ec-00_003340.1 vs. uniprot
Match: A0A7S1DRU5_HEMAN (5-hydroxyisourate hydrolase n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DRU5_HEMAN)

HSP 1 Score: 91.7 bits (226), Expect = 4.920e-22
Identity = 37/56 (66.07%), Postives = 45/56 (80.36%), Query Frame = 1 
Query:   49 KATYRVTFDTEAYFETVGSRCFYPEVAVVFRVEEPEEHYHIPLLISPFGYSTYRGS 216
            K TY+ TFDT +YF  +G +CFYP V ++F +E P EHYHIPLL+SPFGYSTYRGS
Sbjct:   88 KGTYKCTFDTASYFARMGGKCFYPFVPIIFVIEAPSEHYHIPLLLSPFGYSTYRGS 143
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BLAST of Ec-00_003340.1 vs. uniprot
Match: I1BJ72_RHIO9 (5-hydroxyisourate hydrolase n=1 Tax=Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880) TaxID=246409 RepID=I1BJ72_RHIO9)

HSP 1 Score: 90.5 bits (223), Expect = 7.190e-22
Identity = 36/59 (61.02%), Postives = 46/59 (77.97%), Query Frame = 1 
Query:   40 NLSKATYRVTFDTEAYFETVGSRCFYPEVAVVFRVEEPEEHYHIPLLISPFGYSTYRGS 216
             + K  YRVTF+T+ YFE +G  CFYP V +VF + +PE+HYHIPLLISP+ Y+TYRGS
Sbjct:   60 KVEKGIYRVTFETKEYFEKLGQACFYPYVQIVFEITQPEQHYHIPLLISPYSYTTYRGS 118
[Close]
BLAST of Ec-00_003340.1 vs. uniprot
Match: A0A368T1H0_9ACTN (5-hydroxyisourate hydrolase n=1 Tax=Marinitenerispora sediminis TaxID=1931232 RepID=A0A368T1H0_9ACTN)

HSP 1 Score: 90.1 bits (222), Expect = 8.420e-22
Identity = 38/60 (63.33%), Postives = 45/60 (75.00%), Query Frame = 1 
Query:   37 QNLSKATYRVTFDTEAYFETVGSRCFYPEVAVVFRVEEPEEHYHIPLLISPFGYSTYRGS 216
            + L+   YR+ FDTE YF   G R FYPEVAVVF + + E HYH+PLL+SPFGYSTYRGS
Sbjct:   52 RRLAAGVYRLVFDTEGYFRREGRRSFYPEVAVVFEIADEEAHYHVPLLLSPFGYSTYRGS 111
[Close]
BLAST of Ec-00_003340.1 vs. uniprot
Match: A0A1C7NMU4_9FUNG (5-hydroxyisourate hydrolase n=1 Tax=Choanephora cucurbitarum TaxID=101091 RepID=A0A1C7NMU4_9FUNG)

HSP 1 Score: 90.5 bits (223), Expect = 1.170e-21
Identity = 36/59 (61.02%), Postives = 45/59 (76.27%), Query Frame = 1 
Query:   40 NLSKATYRVTFDTEAYFETVGSRCFYPEVAVVFRVEEPEEHYHIPLLISPFGYSTYRGS 216
            N  K  YR+TF+T+AYF  +G  CFYP V +VF +  PE+HYHIPLLISP+ Y+TYRGS
Sbjct:   78 NAEKGIYRITFETKAYFSRMGQECFYPYVQIVFELANPEQHYHIPLLISPYSYTTYRGS 136
The following BLAST results are available for this feature:
BLAST of Ec-00_003340.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRP5_ECTSI6.710e-48100.00Transthyretin n=1 Tax=Ectocarpus siliculosus TaxID... [more]
A0A6H5JTL5_9PHAE1.180e-3494.925-hydroxyisourate hydrolase n=1 Tax=Ectocarpus sp.... [more]
A0A352EVB3_9BACT1.180e-2466.135-hydroxyisourate hydrolase n=2 Tax=Blastocatellia... [more]
A0A2G4SH33_RHIZD8.820e-2361.025-hydroxyisourate hydrolase n=4 Tax=Rhizopus TaxID... [more]
A0A7S0W1Y3_9CRYP2.320e-2266.075-hydroxyisourate hydrolase n=1 Tax=Hemiselmis tep... [more]
A0A367K935_RHIST3.480e-2262.715-hydroxyisourate hydrolase n=1 Tax=Rhizopus stolo... [more]
A0A7S1DRU5_HEMAN4.920e-2266.075-hydroxyisourate hydrolase n=2 Tax=Hemiselmis and... [more]
I1BJ72_RHIO97.190e-2261.025-hydroxyisourate hydrolase n=1 Tax=Rhizopus delem... [more]
A0A368T1H0_9ACTN8.420e-2263.335-hydroxyisourate hydrolase n=1 Tax=Marinitenerisp... [more]
A0A1C7NMU4_9FUNG1.170e-2161.025-hydroxyisourate hydrolase n=1 Tax=Choanephora cu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:3332915..3333133 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score153.3
Seed ortholog evalue4.4e-35
Seed eggNOG ortholog2880.D7FRP5
Length219
KEGG rclassRC03393
KEGG koko:K07127
KEGG TC9.B.35.1.2,9.B.35.2
KEGG ReactionR06601
KEGG Pathwayko00230,ko01100,ko01120,map00230,map01100,map01120
KEGG ModuleM00546
Hectar predicted targeting categoryother localisation
Gene idEc-00_003340.1
EggNOG free text desc.thyroid hormone binding
EggNOG OGsCOG2351@1,KOG3006@2759
EC3.5.2.17
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_003340Ec-00_003340Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 3332915..3334608 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003340.1.1Ec-00_003340.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3332915..3333133 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003340.1CDS:Ec-00_003340.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 3332915..3333133 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003340.1Ec-00_003340.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 3332915..3333133 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_003340.1 ID=Ec-00_003340.1|Name=Ec-00_003340.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=73bp
MAIERLFPVCVFQNLSKATYRVTFDTEAYFETVGSRCFYPEVAVVFRVEE
PEEHYHIPLLISPFGYSTYRGS*
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spliced messenger RNA

>Ec-00_003340.1 ID=Ec-00_003340.1|Name=Ec-00_003340.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=219bp|location=Sequence derived from alignment at chr_00:3332915..3333133+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCATTGAACGTCTTTTCCCTGTTTGCGTCTTTCAGAACCTGAGCAA
GGCCACCTACCGCGTGACGTTCGACACCGAGGCCTACTTCGAGACGGTGG
GGTCCCGCTGCTTTTACCCGGAGGTGGCGGTCGTGTTCCGCGTGGAGGAA
CCCGAGGAGCACTACCACATCCCCCTCCTTATCAGCCCCTTTGGCTACTC
CACCTACCGAGGGAGCTAG
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protein sequence of Ec-00_003340.1

>Ec-00_003340.1 ID=Ec-00_003340.1|Name=Ec-00_003340.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=73bp
MAIERLFPVCVFQNLSKATYRVTFDTEAYFETVGSRCFYPEVAVVFRVEE
PEEHYHIPLLISPFGYSTYRGS*
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mRNA from alignment at chr_00:3332915..3333133+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_003340.1 ID=Ec-00_003340.1|Name=Ec-00_003340.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=219bp|location=Sequence derived from alignment at chr_00:3332915..3333133+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGCCATTGAACGTCTTTTCCCTGTTTGCGTCTTTCAGAACCTGAGCAA
GGCCACCTACCGCGTGACGTTCGACACCGAGGCCTACTTCGAGACGGTGG
GGTCCCGCTGCTTTTACCCGGAGGTGGCGGTCGTGTTCCGCGTGGAGGAA
CCCGAGGAGCACTACCACATCCCCCTCCTTATCAGCCCCTTTGGCTACTC
CACCTACCGAGGGAGCTAG
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Coding sequence (CDS) from alignment at chr_00:3332915..3333133+

>Ec-00_003340.1 ID=Ec-00_003340.1|Name=Ec-00_003340.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=219bp|location=Sequence derived from alignment at chr_00:3332915..3333133+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGCCATTGAACGTCTTTTCCCTGTTTGCGTCTTTCAGAACCTGAGCAA
GGCCACCTACCGCGTGACGTTCGACACCGAGGCCTACTTCGAGACGGTGG
GGTCCCGCTGCTTTTACCCGGAGGTGGCGGTCGTGTTCCGCGTGGAGGAA
CCCGAGGAGCACTACCACATCCCCCTCCTTATCAGCCCCTTTGGCTACTC
CACCTACCGAGGGAGCTAG
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Synonyms
The feature 'Ec-00_003340.1' has the following synonyms
Synonym
Esi0217_0011
Esi_0217_0011