Ec-00_003320.2 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_003320.2
Unique NameEc-00_003320.2
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length100
Homology
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BLAST of Ec-00_003320.2 vs. uniprot
Match: D7FRP4_ECTSI (Similar to Iron-containing Alcohol Dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRP4_ECTSI)

HSP 1 Score: 430 bits (1105), Expect = 2.370e-132
Identity = 248/248 (100.00%), Postives = 248/248 (100.00%), Query Frame = -2 
Query: 3273 QIAELRRQEDAYMDPAYHRRNRARRQTAAGADNPDRTGGGDDAGGDSGTRPSANDGSXXXXXXXXXXXXREKVYSDDYNDRACAVLLKYQRVAGFVLGAGEQDSSDTGRRRAGTNPGAAPSPEDIVEWLDERLLDKNVAPLYRTSLRPEHVQPVLETLLSGXXXXXXXRDGGEKAALLAFGGLGEAAVRSIVAGEAGRRDAGSSSGGEREKEVKGLSAEAAAVVSSMSGDGEGPLGREAPQTGPWQKK 4016
            QIAELRRQEDAYMDPAYHRRNRARRQTAAGADNPDRTGGGDDAGGDSGTRPSANDGSXXXXXXXXXXXXREKVYSDDYNDRACAVLLKYQRVAGFVLGAGEQDSSDTGRRRAGTNPGAAPSPEDIVEWLDERLLDKNVAPLYRTSLRPEHVQPVLETLLSGXXXXXXXRDGGEKAALLAFGGLGEAAVRSIVAGEAGRRDAGSSSGGEREKEVKGLSAEAAAVVSSMSGDGEGPLGREAPQTGPWQKK
Sbjct:  362 QIAELRRQEDAYMDPAYHRRNRARRQTAAGADNPDRTGGGDDAGGDSGTRPSANDGSXXXXXXXXXXXXREKVYSDDYNDRACAVLLKYQRVAGFVLGAGEQDSSDTGRRRAGTNPGAAPSPEDIVEWLDERLLDKNVAPLYRTSLRPEHVQPVLETLLSGXXXXXXXRDGGEKAALLAFGGLGEAAVRSIVAGEAGRRDAGSSSGGEREKEVKGLSAEAAAVVSSMSGDGEGPLGREAPQTGPWQKK 609
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BLAST of Ec-00_003320.2 vs. uniprot
Match: A0A6H5JV39_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV39_9PHAE)

HSP 1 Score: 412 bits (1060), Expect = 1.570e-127
Identity = 273/384 (71.09%), Postives = 280/384 (72.92%), Query Frame = 1 
Query: 1135 VSSAYPPLTQLEAEAESIAGILDRAATADADNNEKTPSKGGEIAATIPDSTSASAPIDRPGVAATATVGAVRVPGAFSAEPELRRRAVAAARKLTPEEERRLRTGEVQRAVSARDVAGGVGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLDPVAAAVERSGSAACCPPLEVQPTAGEPAARKMGSSLALAGGCDSHAPPPPRRPVKVAPAVLALLTKQHSARTIAAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVAPSAKPMSKTLAALLARRADRPPPSGPAGGGGCDGDENEARKKATSPPLGFLGELKARAAXXXXXXXXXG-PEREGKAALPTGGSFLDELKARTARIS 2283
            +SS YP LTQLEAEAE+IAGILDRAATA ADNN KTP K GEIA TI DSTSAS   DRPGVAATA VGAVRVPGAFSAEPELRRRAVAAARKLTPEEERR+R+GEVQRAV++RDVAGGVGG                                 SLDPVAAAVERSG AACCP L  Q  A EPAARKMGSSL LAGGCDSHAPPPPRRPVKVAPAVLALLTKQHSAR  AAAG                 XX XXXXX                        PVAPSAKPMSKTLAALLARRADRP PSGPA GGG DGDENEARKKAT PPLGFLGELKARA XXXXXXXXX  PEREGKAALPTGGSFLDELKA+TARIS
Sbjct:  110 LSSTYPSLTQLEAEAEAIAGILDRAATAAADNNGKTPPKDGEIAVTIQDSTSASDQTDRPGVAATAEVGAVRVPGAFSAEPELRRRAVAAARKLTPEEERRIRSGEVQRAVASRDVAGGVGGGQATITGPAVAEPSPATGSGGVAGTGAAAAP--SLDPVAAAVERSGPAACCPELGAQANACEPAARKMGSSLELAGGCDSHAPPPPRRPVKVAPAVLALLTKQHSARATAAAGARESLEARPKGKGSAAPXXFXXXXXAAGSECPSAEIPSAGARAAV----PVAPSAKPMSKTLAALLARRADRPTPSGPAAGGGFDGDENEARKKATCPPLGFLGELKARAXXXXXXXXXXXXPEREGKAALPTGGSFLDELKAKTARIS 487
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BLAST of Ec-00_003320.2 vs. uniprot
Match: A0A6H5JQI8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQI8_9PHAE)

HSP 1 Score: 397 bits (1019), Expect = 2.110e-123
Identity = 231/250 (92.40%), Postives = 234/250 (93.60%), Query Frame = 3 
Query:   24 VRAAARAMAKLATAVLATLRTGSEVDYASVKAEVGAEAQRLRDLADGHGRELAALSRRVEAAVGQMEAWQQRKAGAPEFAAEEXXXXXXXXXXXXXXXSRALREMRALIPEAVWDMNAGDIQAAAAXXXXXXXXXXXAGASVDGGRGATRVGGVFYPSDLCVRLKECRPLHWLVSAPEDIAGANFLAGEGAAAFTQLEGMDLTEMRAVWSVLPREFLRDGDGKKAEWRARFRVQLEGLARQQDGAIVTAG 773
            VRAAAR+MAKLATAVLATLRTGSEVDYASVKAEV AEAQRLRDLADGHGRELAALSRRVEAAVGQMEAWQQRKA APEFAAEEXXXXXXXXXXXXXXXSRALREMRALIPEAVWDMNAGDIQAAAA           AG S DGG GATRVGGVFYPS+LCVRLKECRPLHWLVSAPEDIAGANFLAGEGAAAFTQLEGMDLTEMRAVWSVLPREFLRDGDGKKAEWRARFRVQLEGLARQQDGA+VTAG
Sbjct:  117 VRAAARSMAKLATAVLATLRTGSEVDYASVKAEVAAEAQRLRDLADGHGRELAALSRRVEAAVGQMEAWQQRKAEAPEFAAEEXXXXXXXXXXXXXXXSRALREMRALIPEAVWDMNAGDIQAAAAQAPAQ------AGVSADGGGGATRVGGVFYPSELCVRLKECRPLHWLVSAPEDIAGANFLAGEGAAAFTQLEGMDLTEMRAVWSVLPREFLRDGDGKKAEWRARFRVQLEGLARQQDGAVVTAG 360
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BLAST of Ec-00_003320.2 vs. uniprot
Match: A0A6H5JQN5_9PHAE (Fe-ADH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQN5_9PHAE)

HSP 1 Score: 381 bits (979), Expect = 3.180e-116
Identity = 216/247 (87.45%), Postives = 223/247 (90.28%), Query Frame = -2 
Query: 3273 IAELRRQEDAYMDPAYHRRNRARRQTAAGADNPDRTGGGDDAGGDSGTRPSANDGSXXXXXXXXXXXXREKVYSDDYNDRACAVLLKYQRVAGFVLGAGEQDSSDTGRRRAGTNPGAAPSPEDIVEWLDERLLDKNVAPLYRTSLRPEHVQPVLETLLSGXXXXXXXRDGGEKAALLAFGGLGEAAVRSIVAGEAGRRDAGSSSGGEREKEVKGLSAEAAAVVSSMSGDGEGPLGREAPQTGPWQKK 4013
            IAELRRQEDAYMDPAYHRRNRARR TA G DNPDR GGG +AGGDSG+RPSANDGS    XXXXXXXX EKVYSDDYNDRACAVLLKYQRVAGFVLGAGEQD   TGRRRAGTNPGAAPSPEDIVEWLDERLLDKNVAPLYRT LRPEHVQPVLETLLSG XXX    DGGEKAALLAFG LGEAAVRSIVAGEA  RDAGSS GGE+EK+V+G+SAEAAAVVSS+SGDGEGP GREAPQTGPWQKK
Sbjct:  219 IAELRRQEDAYMDPAYHRRNRARRHTADGTDNPDRMGGGIEAGGDSGSRPSANDGSRSGSXXXXXXXXHEKVYSDDYNDRACAVLLKYQRVAGFVLGAGEQDGGGTGRRRAGTNPGAAPSPEDIVEWLDERLLDKNVAPLYRTGLRPEHVQPVLETLLSGGXXXDGNHDGGEKAALLAFGVLGEAAVRSIVAGEACTRDAGSSRGGEQEKQVEGVSAEAAAVVSSISGDGEGPPGREAPQTGPWQKK 465
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BLAST of Ec-00_003320.2 vs. uniprot
Match: D7FRP3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRP3_ECTSI)

HSP 1 Score: 354 bits (908), Expect = 7.730e-98
Identity = 203/253 (80.24%), Postives = 204/253 (80.63%), Query Frame = 3 
Query:   24 VRAAARAMAKLATAVLATLRTGSEVDYASVKAEVGAEAQRLRDLADGHGRELAALSRRVEAAVGQMEAWQQRKAGAPEFAAEEXXXXXXXXXXXXXXXSRALREMRALIPEAVWDMNAGDIQAAAAXXXXXXXXXXXAGASVDGGRGATRVGGVFYPSDLCVRLKECRPLHWLVSAPEDIAGANFLAGEGAAAFTQLEGMDLTEMRAVWSVLPREFLRDGDGKKAEWRARFRVQLEGLARQQDGAIVTAGGTP 782
            VRAAARAMAKLATAVLATLRTGSEVDYASVKAEVGAEAQRLRDLADGHGRELAALSRRVEAAVGQMEAWQQRKAGAPEFAAEE                 A RE      EA  + N                    AGASVDGGRGATRVGGVFYPSDLCVRLKECRPLHWLVSAPEDIAGANFLAGEGAAAFTQLEGMDLTEMRAVWSVLPREFLRDGDGKKAEWRARFRVQLEGLARQQDGAIVTAG  P
Sbjct:  768 VRAAARAMAKLATAVLATLRTGSEVDYASVKAEVGAEAQRLRDLADGHGRELAALSRRVEAAVGQMEAWQQRKAGAPEFAAEE-----------------AARE------EAWSEANR------------------EAGASVDGGRGATRVGGVFYPSDLCVRLKECRPLHWLVSAPEDIAGANFLAGEGAAAFTQLEGMDLTEMRAVWSVLPREFLRDGDGKKAEWRARFRVQLEGLARQQDGAIVTAGWDP 979
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BLAST of Ec-00_003320.2 vs. uniprot
Match: D7FIN4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIN4_ECTSI)

HSP 1 Score: 99.8 bits (247), Expect = 3.280e-17
Identity = 65/196 (33.16%), Postives = 95/196 (48.47%), Query Frame = 3 
Query:  201 EAAVGQMEAWQQRKAGAPEFAA--EEXXXXXXXXXXXXXXXSRALREMRALIPEAVWDMNAGDIQAAAAXXXXXXXXXXXAGASVDGGRGATRVGGVFYPSDLCVRLKECRPLHWLVSAPEDIAGANFLAGEGAAAFTQLEGMDLTEMRAVWSVLPREFLRDGDGKKAEWRARFRVQLEGLARQQDGAIVTAGGTP 782
            +AA+ +ME W++RK   PE+    E                  AL+  R LIP  V  +   +++  A                +D G          YP +L +R+KE R LHW+V+ P+DIA +NFL G+ A  FT L+  DL E+RA+ + LP +F  D DG+KA WR  F  + + L  Q+ G  V+ G  P
Sbjct:  981 QAALARMEKWRERKEALPEYGQGNEVADQEKAWFEREREANDLALQRTRKLIPVGVTRLTVAELEQHA----------------LDAGS--------LYPRELTLRIKENRLLHWVVTHPDDIARSNFLRGDHAHFFTNLDKYDLVELRAIMACLPAKFEVDADGRKAAWRELFLQRAQSLVAQERGDTVSGGWDP 1152
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BLAST of Ec-00_003320.2 vs. uniprot
Match: A0A067C5X9_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C5X9_SAPPC)

HSP 1 Score: 97.8 bits (242), Expect = 9.950e-17
Identity = 68/207 (32.85%), Postives = 95/207 (45.89%), Query Frame = 3 
Query:  171 RELAALSRRVEAAVGQMEAWQQRKAGAPEFAAEEXXXXXXXXXXXXXXXSRALREMRALIPEAVWDMNAGDIQAAAAXXXXXXXXXXXAGASVDGGRGATRVGGVFYPSDLCVRLKECRPLHWLVSAPEDIAGANFLAGEGAAAFTQLEGMDLTEMRAVWSVLPREFLRDGDGKKAEWRARFRVQLEGLARQQDGAIVTAGGTPCAG 791
            REL    R++ A + QME W+ R+  A E++ E                   L  + +LIP+++                        A  SVD    A +  GV Y  DL   LK+ + L W+V+   D A  NF++G+ A  FT LE  D+TEMRA++  LP  F  D +G+KAEWR  F   L+ L +Q  G  V AG  P  G
Sbjct:  449 RELQIKDRQINATLKQMEIWRSRRENAKEYSGEMKRLEEAWRANHSADNQVCLERLCSLIPDSI------------------------AAMSVDQLLDAAKQAGVLYTRDLVNYLKQNKLLQWVVTHEVDKARDNFISGDTAQCFTNLELYDITEMRAIYLALPDAFEFDKEGRKAEWRVGFIAHLKVLVQQYHGETVKAGWDPVKG 631
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BLAST of Ec-00_003320.2 vs. uniprot
Match: A0A1V9ZQ70_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZQ70_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 1.310e-16
Identity = 64/200 (32.00%), Postives = 97/200 (48.50%), Query Frame = 3 
Query:  171 RELAALSRRVEAAVGQMEAWQQRKAGAPEFAAEEXXXXXXXXXXXXXXXSRALREMRALIPEAVWDMNAGDIQAAAAXXXXXXXXXXXAGASVDGGRGATRVGGVFYPSDLCVRLKECRPLHWLVSAPEDIAGANFLAGEGAAAFTQLEGMDLTEMRAVWSVLPREFLRDGDGKKAEWRARFRVQLEGLARQQDGAIVTA 770
            +ELA   R+V + + +ME W+ R+  A E+ AE                   L  + +LIPE++                        A  S++    AT+  GV Y  DL   LK+ + L W+V+  +D A  NF+ G+ A  FT +E  D+TE+RA++  LP  F  D +G+K+EWR  F   L+ L +QQ+G  VTA
Sbjct:  444 KELAIKERKVNSTLKKMEIWRTRRENAKEYPAELRKVEAEWRAKHLLDNQICLERLCSLIPESI------------------------AAMSIEMLLDATKAMGVLYTRDLANYLKQNKLLQWVVTHEKDKARENFITGDTAQCFTNIEMYDITELRAIYLALPENFEFDKEGRKSEWRQNFVSHLKVLVQQQNGDSVTA 619
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BLAST of Ec-00_003320.2 vs. uniprot
Match: A0A1V9ZGN9_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZGN9_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 1.330e-16
Identity = 70/228 (30.70%), Postives = 101/228 (44.30%), Query Frame = 3 
Query:  171 RELAALSRRVEAAVGQMEAWQQRKAGAPEFAAEEXXXXXXXXXXXXXXXSRALREMRALIPEAVWDMNAGDIQAAAAXXXXXXXXXXXAGASVDGGRGATRVGGVFYPSDLCVRLKECRPLHWLVSAPEDIAGANFLAGEGAAAFTQLEGMDLTEMRAVWSVLPREFLRDGDGKKAEWRARFRVQLEGLARQQDGAIVTAGGTPCAGDGQPPACPLSRRTELATRPTS 854
            +EL    R + A + Q+E W+ R+  + E+ AE                   L  + +LIP+++  M    +  AA                        R  GV Y  DL   LK+ + L W+V+  +D A  NF++G+ A  FT LE  D+TEMR ++  LP  F  D +G+KAEWRA F   L+ L +Q DG  V AG       G   A     R E+  +P S
Sbjct:  461 KELQRKERHINATLKQLEVWRARRETSKEYPAEMRRLEAAWCAKHLPDNQVCLERLCSLIPDSIAAMPIETLLDAA------------------------RAAGVLYTRDLANYLKQNKLLQWVVTHEKDKARDNFISGDTAQCFTNLEMYDITEMRGIYLALPESFEFDKEGRKAEWRADFIAHLKILVQQYDGDTVKAGHATAVQGGPAYAHCAGARAEVKLKPLS 664
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BLAST of Ec-00_003320.2 vs. uniprot
Match: A0A7S2SCH3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SCH3_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 1.440e-7
Identity = 38/87 (43.68%), Postives = 50/87 (57.47%), Query Frame = 3 
Query:  492 PSDLCVRLKECRPLHWLVSAPEDIAGANFLAGEGAAAFTQLEGMDLTEMRAVWSVLPREFLRDGDGKKAEWRARFRVQLEGLARQQD 752
            P  L  RL + + L  L   P DIA    +      A    +G+D+ EMRAVW+VLP +F  DGDGKKAEWR  FR +LE L  +++
Sbjct:  180 PRALAKRLWDKKILWMLRMHPLDIA---LIHQADLRAKYPNQGLDIIEMRAVWTVLPEDFENDGDGKKAEWRFNFRQKLEELTTKEE 263
The following BLAST results are available for this feature:
BLAST of Ec-00_003320.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D7FRP4_ECTSI2.370e-132100.00Similar to Iron-containing Alcohol Dehydrogenase n... [more]
A0A6H5JV39_9PHAE1.570e-12771.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQI8_9PHAE2.110e-12392.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQN5_9PHAE3.180e-11687.45Fe-ADH domain-containing protein n=1 Tax=Ectocarpu... [more]
D7FRP3_ECTSI7.730e-9880.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FIN4_ECTSI3.280e-1733.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A067C5X9_SAPPC9.950e-1732.85Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A1V9ZQ70_9STRA1.310e-1632.00Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A1V9ZGN9_9STRA1.330e-1630.70Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A7S2SCH3_9STRA1.440e-743.68Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:3320420..3325606 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length4064
Hectar predicted targeting categorysignal anchor
Gene idEc-00_003320.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_003320Ec-00_003320Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 3314855..3325606 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003320.2Ec-00_003320.2Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 3323848..3324147 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003320.2.1Ec-00_003320.2.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3320420..3320444 +
Ec-00_003320.2.2Ec-00_003320.2.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3320827..3321575 +
Ec-00_003320.2.3Ec-00_003320.2.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3322026..3322389 +
Ec-00_003320.2.4Ec-00_003320.2.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3322681..3325606 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0033205UTR:Ec-00_003320.2Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_00 3320420..3320444 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003320.2CDS:Ec-00_003320.2Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 3323848..3324147 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0033203UTR:Ec-00_003320.2Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_00 3324148..3325606 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_003320.2 ID=Ec-00_003320.2|Name=Ec-00_003320.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=100bp
MGVKRPRGFQSLEAYLVILRLFLSGCFFIISIYSFTATEVACTRSSTQCQ
LRCFSYLLSFCRELIEKVFSGLQPEITGPGAKRRRGGGEGGEGVFPPSR*
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spliced messenger RNA

>Ec-00_003320.2 ID=Ec-00_003320.2|Name=Ec-00_003320.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=4064bp|location=Sequence derived from alignment at chr_00:3320420..3325606+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
GCCGGCCGATGTCGCCGCCAGAGAGGTGAGAGCCGCAGCGAGAGCCATGG
CAAAGCTCGCGACGGCCGTGCTGGCTACGTTGAGGACGGGTTCGGAGGTG
GACTATGCGTCGGTCAAGGCGGAGGTCGGCGCCGAGGCGCAGAGGCTCAG
GGACCTGGCGGACGGGCACGGTCGGGAACTCGCCGCTCTCTCCCGACGGG
TGGAGGCGGCGGTAGGGCAGATGGAGGCCTGGCAGCAGAGGAAGGCGGGG
GCGCCGGAGTTCGCGGCGGAGGAGGCGGCGCGGGAGGAGGCCTGGAGCGA
GGCGAACCGAGAGGCGAACTCCCGCGCCCTGCGGGAGATGCGCGCGCTGA
TTCCAGAAGCGGTGTGGGACATGAACGCCGGCGACATCCAGGCTGCTGCT
GCTGCTGCCGCTGCTGCTGCTCAAGCGCCTGCGCAGGCGGGGGCGTCGGT
GGACGGTGGGAGGGGTGCTACCCGTGTGGGCGGCGTGTTCTACCCGTCGG
ACCTGTGCGTCCGTCTCAAGGAGTGCCGGCCCCTGCACTGGCTGGTTAGC
GCCCCGGAGGACATCGCCGGCGCCAACTTCCTGGCCGGGGAGGGGGCCGC
GGCGTTCACCCAGCTGGAAGGGATGGACCTGACGGAGATGCGGGCGGTGT
GGAGCGTCCTGCCCCGAGAGTTCCTGAGGGACGGCGACGGCAAGAAGGCG
GAGTGGCGGGCCAGGTTCAGGGTCCAGCTTGAGGGGCTGGCTCGGCAGCA
GGATGGGGCCATCGTGACCGCCGGGTGGGACCCCGTGCGCCGGCGACGGG
CAACCGCCCGCATGCCCCCTCTCCCGGCGCACCGAGCTCGCAACCCGGCC
TACTTCTACCCCTCGGTGGAGGCAATGGCGTCTCGCGTGGCCCGGCTGCG
GGAGCAGCGCCGGCGGCTGGACGCCCGCAAGCGGCGGCTGTCGGAGCTGG
AGGCGGAGCTCGGCGAGGCCAAGGCCGAGGTGGACTCGGCCTGCGCGGAC
GCGAGGTCCGGCGAGCTCCGCGAGCGGTACGGGGCGGACACCCTCCGGGG
GGCCCGCGAGGCCGCGAAGGAGGCGCACTCGGTCCTCGTGCGGGAGAAGA
GGCGCCTCCTGGCGAGCGTGGCGGAGGCCGAGAAGATGCTCTCTTCGGCG
TATCCACCCCTGACCCAGCTGGAGGCGGAGGCGGAGTCGATTGCCGGGAT
TCTTGACCGCGCTGCGACCGCCGACGCCGACAACAACGAAAAAACGCCCT
CGAAGGGTGGCGAGATTGCGGCCACGATTCCCGACTCCACCTCCGCCTCC
GCTCCGATTGACCGGCCAGGCGTTGCCGCGACAGCGACGGTGGGAGCCGT
CCGGGTGCCGGGAGCCTTCAGCGCGGAGCCCGAGCTCCGTCGAAGGGCCG
TCGCGGCCGCGAGGAAGCTCACTCCGGAGGAAGAGCGTCGCCTCAGGACC
GGCGAGGTCCAGCGCGCGGTGTCGGCCAGGGACGTTGCCGGAGGCGTGGG
CGGCGGGCAGGCAACGACATCCGGAGCCGCTGCCGCCGTCGCAGAACCAT
CACCGGCCACCGGAGGCGGCGGCGTTGCCGGGACAGGTGCGGCGGCGGCC
CTGTCGCTCGACCCTGTCGCCGCTGCTGTCGAGCGGTCCGGGTCAGCGGC
GTGTTGTCCACCACTTGAGGTTCAACCAACCGCGGGTGAGCCGGCGGCGA
GAAAGATGGGATCGTCTCTGGCGTTGGCCGGTGGATGCGACAGCCATGCC
CCTCCGCCGCCTCGCCGGCCGGTGAAGGTCGCGCCGGCGGTGCTCGCGCT
CCTCACCAAGCAGCACAGCGCCCGCACGATTGCTGCCGCAGGAGCTGGAG
AGTCTGCGGAGGCCAGGCCGAAGGGAAAAGGGTCAGCGGCACCAGGACCG
TTCGCTGTGGCGGCGGCGGCGGCGGCGGGGCCGGAATGTCCGTCTGCTGA
AACCTCTTCGGCGGGGGCGGGGGCGGCGGCAGTGGCAGTGCCGGTCGCTC
CATCTGCGAAGCCGATGTCGAAGACCCTGGCAGCCCTGCTCGCACGGAGG
GCTGACAGACCACCGCCGTCCGGCCCTGCCGGGGGCGGCGGCTGCGACGG
CGACGAAAACGAGGCGCGCAAGAAGGCGACCTCTCCACCGCTTGGGTTCT
TGGGCGAGCTGAAGGCGAGGGCGGCGGCGGCGGCGGCGAAGGGCGCGGGG
GCGGGCCCTGAGCGGGAGGGGAAGGCAGCCTTGCCTACGGGAGGCTCTTT
CTTGGACGAGCTGAAGGCCAGGACGGCAAGGATTTCCTGAGCCACCCGAG
CGCACATGGGGGTCAAGCGCCCGCGGGGTTTCCAGTCCCTTGAGGCCTAT
TTAGTTATTTTGAGGTTATTCCTTTCGGGTTGTTTTTTCATTATTTCTAT
TTATTCCTTTACGGCCACGGAGGTCGCCTGTACTCGTTCGAGTACGCAGT
GTCAGCTTCGGTGCTTTTCATATCTGCTATCCTTTTGCCGCGAGCTCATA
GAAAAGGTGTTTTCGGGATTACAGCCGGAAATCACCGGGCCAGGAGCCAA
GCGGCGCAGGGGTGGGGGTGAGGGTGGGGAGGGGGTGTTCCCTCCCTCTA
GATAGATGCCCAGACGTATCATGGTTTCGGGTCACAGCAGCAAGTGACTG
CGTCGGTGTGGCCTAGGTTTGTCTACCAGGCTGGTTGTAAGTATTTTGTT
ACCGATACACGTCGGTGGAAAGTGATGTAGAAGTGGTATTCTCCAGCAGA
GGCTTCGATGCAAGGATGCAAGACCAACGGCATGGTTCGTTCATGGGAAA
GGGAAAGGGGGACGCGTTCGTGTTGACTTGGGGTCGAACGAAACGTTAGG
TTTTTTCATTGTCTGGCTGCGAAACGGGTATGTCGGACGCCGGTATTGCG
AGCCTTTTTATCCACGTTGAGGGCACGCACCAGCCGGTATTGAGGTTGAC
AGTAGTAGTGGGAGACGGGGTATTTACAAAACATTGAAGTCAGAAGTGCT
TAAATAGTTGGAGTACCAGCACTGCTGTGGCGACGCGCCACCAAATAACA
CATAACGTACACACTGTATCTCTTCAGAAGATTGTCTACACGTAACCATG
CAAGGAAGGAAAGGTCAAAACGCCATGGAGCGTAACATATAAGCAGACTA
CCGTAGAGGGGGCTAACGTGAGCTGAAACAGACGTCATGCCCCCAGTCTC
TTAGCCCATCTCCTGTTTGGGAAACAACACCAGCAAAAACCTCCTCCTGC
TGCTGCTGCTCGAACGCGGCTTGGTCACTTCTTCTGCCACGGCCCAGTCT
GGGGTGCCTCTCGGCCCAGAGGTCCCTCGCCGTCCCCAGACATCGACGAA
ACCACTGCCGCAGCTTCCGCCGACAATCCCTTCACCTCCTTCTCCCGTTC
TCCACCGCTGCTGCTGCCTGCGTCTCGTCTGCCAGCCTCGCCCGCAACAA
TCGACCGAACGGCGGCTTCCCCCAATCCCCCGAACGCCAACAACGCCGCC
TTCTCGCCGCCATCGCGGCTATCGCCGCCGCCGCCGCCGCCGCTCAACAA
CGTCTCGAGGACGGGCTGGACGTGCTCCGGTCTCAGGCTCGTGCGGTAGA
GCGGGGCTACGTTCTTGTCGAGCAGTCGCTCGTCTAGCCACTCGACGATG
TCCTCCGGGGACGGCGCGGCGCCGGGATTCGTCCCCGCTCTTCTTCTGCC
GGTGTCGCTGCTGTCTTGTTCCCCCGCTCCCAGCACGAAGCCGGCGACGC
GCTGGTACTTGAGCAGCACGGCGCAGGCCCGGTCGTTGTAGTCGTCAGAG
TAGACCTTTTCGCGGCCGCCGCCGCCGCCGCCGCCGTCGCTACCGCTGCC
GCTGCCATCGTTGGCAGACGGACGAGTACCGCTGTCGCCTCCAGCATCAT
CACCCCCGCCCGTCCGGTCAGGGTTATCGGCACCGGCCGCGGTTTGGCGG
CGGGCGCGGTTGCGGCGGTGGTAGGCGGGGTCCATGTAGGCGTCTTCCTG
GCGTCGTAGCTCGGCAATCTGCGAGGGGAAAAAGGTGCGCATGGGGGGGG
GATCGGGGCGTAAG
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protein sequence of Ec-00_003320.2

>Ec-00_003320.2 ID=Ec-00_003320.2|Name=Ec-00_003320.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=100bp
MGVKRPRGFQSLEAYLVILRLFLSGCFFIISIYSFTATEVACTRSSTQCQ
LRCFSYLLSFCRELIEKVFSGLQPEITGPGAKRRRGGGEGGEGVFPPSR*
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mRNA from alignment at chr_00:3320420..3325606+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_003320.2 ID=Ec-00_003320.2|Name=Ec-00_003320.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=5187bp|location=Sequence derived from alignment at chr_00:3320420..3325606+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
GCCGGCCGATGTCGCCGCCAGAGAGGTGAGAGGAAGCGTGCTTTTCGTTC
TGCTGGTTGATTTTTCTCCCTCCCTAGGCCGAGAAAGCGAGCGTGCGTTT
CGAGGTATGTATGTAGGAGGAAAGCAGCCTGCACCGCTGCCGCTTCCCCA
AGTCATGTCGGCGGGGCAACGCGACAGCAAGTGTCGGGTTGCTGAAAAAG
TGTTGTATTTTCGGGTTTGCGGTTGGTGGTAGCGTTGGCGTTGGCGTTTT
ATTCTCTTCGAGCGGTGCAGTAAATGACTGCATGTGTTGTGTGTTGGAGC
GAAACGCATCGCAGAATATTCCTCGCGCACCGCCGCGGCGGACCGCAATC
CAAGCTCTCTCTGTCGGCACACACACACTAAAAAAAAAACATGCGTTCAC
GGACCAGGTGAGAGCCGCAGCGAGAGCCATGGCAAAGCTCGCGACGGCCG
TGCTGGCTACGTTGAGGACGGGTTCGGAGGTGGACTATGCGTCGGTCAAG
GCGGAGGTCGGCGCCGAGGCGCAGAGGCTCAGGGACCTGGCGGACGGGCA
CGGTCGGGAACTCGCCGCTCTCTCCCGACGGGTGGAGGCGGCGGTAGGGC
AGATGGAGGCCTGGCAGCAGAGGAAGGCGGGGGCGCCGGAGTTCGCGGCG
GAGGAGGCGGCGCGGGAGGAGGCCTGGAGCGAGGCGAACCGAGAGGCGAA
CTCCCGCGCCCTGCGGGAGATGCGCGCGCTGATTCCAGAAGCGGTGTGGG
ACATGAACGCCGGCGACATCCAGGCTGCTGCTGCTGCTGCCGCTGCTGCT
GCTCAAGCGCCTGCGCAGGCGGGGGCGTCGGTGGACGGTGGGAGGGGTGC
TACCCGTGTGGGCGGCGTGTTCTACCCGTCGGACCTGTGCGTCCGTCTCA
AGGAGTGCCGGCCCCTGCACTGGCTGGTTAGCGCCCCGGAGGACATCGCC
GGCGCCAACTTCCTGGCCGGGGAGGGGGCCGCGGCGTTCACCCAGCTGGA
AGGGATGGACCTGACGGAGATGCGGGCGGTGTGGAGCGTCCTGCCCCGAG
AGTTCCTGAGGGACGGCGACGGCAAGAAGGCGGAGTGGCGGGCCAGGTTC
AGGGTCCAGCTTGAGGGGCTGGCTCGGCAGCAGGATGGGGCCATCGTGAC
CGCCGGGTGGGTGTGGACGGTCTAGACTGCTCCTGCACAGTGTTCGTTCG
TGGTGTCAGCCTGGGGGCATGGTAGATGTCGTAGATATCGTTTTGGTTGT
CCTCTGGGTGGTGGACGTTAGGCGGTAGGCATCTTGCGCAAACTCTCGTA
TTGTTGTCGGTGCTGGGCGAGGGGGGGGCTTGTCTCTGCATGCTGCCGTT
GGGTCGGCGTGATCGTCCAAGATTAGTACGGGAGAAACTGCCCGTGTCGA
TATAACCACGCGGCTGCTTGTCGTACTCCAACCGATACTCGGGCACCACA
TCTTACAAGGCGGCCAACGGCGCTGCATAGAATGGTAAACTCTCAAGAAC
TCGGAGTACTCGAAACGCGTCGACTCTCCCCTTCGCGCCCTCCCATTTTG
TGAACCCCACCACTAACATACCCTTTTGGGTGGCCGGACGAAAAAACTGT
ACGCAGGTGGGACCCCGTGCGCCGGCGACGGGCAACCGCCCGCATGCCCC
CTCTCCCGGCGCACCGAGCTCGCAACCCGGCCTACTTCTACCCCTCGGTG
GAGGCAATGGCGTCTCGCGTGGCCCGGCTGCGGGAGCAGCGCCGGCGGCT
GGACGCCCGCAAGCGGCGGCTGTCGGAGCTGGAGGCGGAGCTCGGCGAGG
CCAAGGCCGAGGTGGACTCGGCCTGCGCGGACGCGAGGTCCGGCGAGCTC
CGCGAGCGGTACGGGGCGGACACCCTCCGGGGGGCCCGCGAGGCCGCGAA
GGAGGCGCACTCGGTCCTCGTGCGGGAGAAGAGGCGCCTCCTGGCGAGCG
TGGCGGAGGCCGAGAAGATGGTGAGCATGCGCGCGCGCGCGCGTGTACGC
GGAGAGCAAGCGAGAACAAGAGGAAGGGGTTCGTTCGTTCATGTGTGTTT
TCGCGTGATATGCGTACATAGGGGAGGCAATATTGATTGTGTTCATGAGC
CGCTGGTATTCGATATGCGCCAGGGGGACTGTGGGCGGCATCGGGATCTT
CTTTTAGTGAACAAACTGGTGCGAACTCCGGCCCTGCTGCCCTTGTACCC
CCCCCCGTCCCCCCGTCCCCCTAATTTTTTTTTGTTTTGATTTTCCACCC
GCCTTTCGCAGCTCTCTTCGGCGTATCCACCCCTGACCCAGCTGGAGGCG
GAGGCGGAGTCGATTGCCGGGATTCTTGACCGCGCTGCGACCGCCGACGC
CGACAACAACGAAAAAACGCCCTCGAAGGGTGGCGAGATTGCGGCCACGA
TTCCCGACTCCACCTCCGCCTCCGCTCCGATTGACCGGCCAGGCGTTGCC
GCGACAGCGACGGTGGGAGCCGTCCGGGTGCCGGGAGCCTTCAGCGCGGA
GCCCGAGCTCCGTCGAAGGGCCGTCGCGGCCGCGAGGAAGCTCACTCCGG
AGGAAGAGCGTCGCCTCAGGACCGGCGAGGTCCAGCGCGCGGTGTCGGCC
AGGGACGTTGCCGGAGGCGTGGGCGGCGGGCAGGCAACGACATCCGGAGC
CGCTGCCGCCGTCGCAGAACCATCACCGGCCACCGGAGGCGGCGGCGTTG
CCGGGACAGGTGCGGCGGCGGCCCTGTCGCTCGACCCTGTCGCCGCTGCT
GTCGAGCGGTCCGGGTCAGCGGCGTGTTGTCCACCACTTGAGGTTCAACC
AACCGCGGGTGAGCCGGCGGCGAGAAAGATGGGATCGTCTCTGGCGTTGG
CCGGTGGATGCGACAGCCATGCCCCTCCGCCGCCTCGCCGGCCGGTGAAG
GTCGCGCCGGCGGTGCTCGCGCTCCTCACCAAGCAGCACAGCGCCCGCAC
GATTGCTGCCGCAGGAGCTGGAGAGTCTGCGGAGGCCAGGCCGAAGGGAA
AAGGGTCAGCGGCACCAGGACCGTTCGCTGTGGCGGCGGCGGCGGCGGCG
GGGCCGGAATGTCCGTCTGCTGAAACCTCTTCGGCGGGGGCGGGGGCGGC
GGCAGTGGCAGTGCCGGTCGCTCCATCTGCGAAGCCGATGTCGAAGACCC
TGGCAGCCCTGCTCGCACGGAGGGCTGACAGACCACCGCCGTCCGGCCCT
GCCGGGGGCGGCGGCTGCGACGGCGACGAAAACGAGGCGCGCAAGAAGGC
GACCTCTCCACCGCTTGGGTTCTTGGGCGAGCTGAAGGCGAGGGCGGCGG
CGGCGGCGGCGAAGGGCGCGGGGGCGGGCCCTGAGCGGGAGGGGAAGGCA
GCCTTGCCTACGGGAGGCTCTTTCTTGGACGAGCTGAAGGCCAGGACGGC
AAGGATTTCCTGAGCCACCCGAGCGCACATGGGGGTCAAGCGCCCGCGGG
GTTTCCAGTCCCTTGAGGCCTATTTAGTTATTTTGAGGTTATTCCTTTCG
GGTTGTTTTTTCATTATTTCTATTTATTCCTTTACGGCCACGGAGGTCGC
CTGTACTCGTTCGAGTACGCAGTGTCAGCTTCGGTGCTTTTCATATCTGC
TATCCTTTTGCCGCGAGCTCATAGAAAAGGTGTTTTCGGGATTACAGCCG
GAAATCACCGGGCCAGGAGCCAAGCGGCGCAGGGGTGGGGGTGAGGGTGG
GGAGGGGGTGTTCCCTCCCTCTAGATAGATGCCCAGACGTATCATGGTTT
CGGGTCACAGCAGCAAGTGACTGCGTCGGTGTGGCCTAGGTTTGTCTACC
AGGCTGGTTGTAAGTATTTTGTTACCGATACACGTCGGTGGAAAGTGATG
TAGAAGTGGTATTCTCCAGCAGAGGCTTCGATGCAAGGATGCAAGACCAA
CGGCATGGTTCGTTCATGGGAAAGGGAAAGGGGGACGCGTTCGTGTTGAC
TTGGGGTCGAACGAAACGTTAGGTTTTTTCATTGTCTGGCTGCGAAACGG
GTATGTCGGACGCCGGTATTGCGAGCCTTTTTATCCACGTTGAGGGCACG
CACCAGCCGGTATTGAGGTTGACAGTAGTAGTGGGAGACGGGGTATTTAC
AAAACATTGAAGTCAGAAGTGCTTAAATAGTTGGAGTACCAGCACTGCTG
TGGCGACGCGCCACCAAATAACACATAACGTACACACTGTATCTCTTCAG
AAGATTGTCTACACGTAACCATGCAAGGAAGGAAAGGTCAAAACGCCATG
GAGCGTAACATATAAGCAGACTACCGTAGAGGGGGCTAACGTGAGCTGAA
ACAGACGTCATGCCCCCAGTCTCTTAGCCCATCTCCTGTTTGGGAAACAA
CACCAGCAAAAACCTCCTCCTGCTGCTGCTGCTCGAACGCGGCTTGGTCA
CTTCTTCTGCCACGGCCCAGTCTGGGGTGCCTCTCGGCCCAGAGGTCCCT
CGCCGTCCCCAGACATCGACGAAACCACTGCCGCAGCTTCCGCCGACAAT
CCCTTCACCTCCTTCTCCCGTTCTCCACCGCTGCTGCTGCCTGCGTCTCG
TCTGCCAGCCTCGCCCGCAACAATCGACCGAACGGCGGCTTCCCCCAATC
CCCCGAACGCCAACAACGCCGCCTTCTCGCCGCCATCGCGGCTATCGCCG
CCGCCGCCGCCGCCGCTCAACAACGTCTCGAGGACGGGCTGGACGTGCTC
CGGTCTCAGGCTCGTGCGGTAGAGCGGGGCTACGTTCTTGTCGAGCAGTC
GCTCGTCTAGCCACTCGACGATGTCCTCCGGGGACGGCGCGGCGCCGGGA
TTCGTCCCCGCTCTTCTTCTGCCGGTGTCGCTGCTGTCTTGTTCCCCCGC
TCCCAGCACGAAGCCGGCGACGCGCTGGTACTTGAGCAGCACGGCGCAGG
CCCGGTCGTTGTAGTCGTCAGAGTAGACCTTTTCGCGGCCGCCGCCGCCG
CCGCCGCCGTCGCTACCGCTGCCGCTGCCATCGTTGGCAGACGGACGAGT
ACCGCTGTCGCCTCCAGCATCATCACCCCCGCCCGTCCGGTCAGGGTTAT
CGGCACCGGCCGCGGTTTGGCGGCGGGCGCGGTTGCGGCGGTGGTAGGCG
GGGTCCATGTAGGCGTCTTCCTGGCGTCGTAGCTCGGCAATCTGCGAGGG
GAAAAAGGTGCGCATGGGGGGGGGATCGGGGCGTAAG
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Coding sequence (CDS) from alignment at chr_00:3320420..3325606+

>Ec-00_003320.2 ID=Ec-00_003320.2|Name=Ec-00_003320.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=300bp|location=Sequence derived from alignment at chr_00:3320420..3325606+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGGGGTCAAGCGCCCGCGGGGTTTCCAGTCCCTTGAGGCCTATTTAGT
TATTTTGAGGTTATTCCTTTCGGGTTGTTTTTTCATTATTTCTATTTATT
CCTTTACGGCCACGGAGGTCGCCTGTACTCGTTCGAGTACGCAGTGTCAG
CTTCGGTGCTTTTCATATCTGCTATCCTTTTGCCGCGAGCTCATAGAAAA
GGTGTTTTCGGGATTACAGCCGGAAATCACCGGGCCAGGAGCCAAGCGGC
GCAGGGGTGGGGGTGAGGGTGGGGAGGGGGTGTTCCCTCCCTCTAGATAG
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Synonyms
The feature 'Ec-00_003320.2' has the following synonyms
Synonym
Esi0217_0009
Esi_0217_0009