Ec-00_003310.3 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_003310.3
Unique NameEc-00_003310.3
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length322
Homology
The following BLAST results are available for this feature:
BLAST of Ec-00_003310.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:3310459..3314598 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length1626
Hectar predicted targeting categoryother localisation
Gene idEc-00_003310.3
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_003310Ec-00_003310Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 3310459..3314598 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003310.3Ec-00_003310.3Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 3310999..3314478 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003310.3.6Ec-00_003310.3.6Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3310459..3311093 -
Ec-00_003310.3.5Ec-00_003310.3.5Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3311634..3311916 -
Ec-00_003310.3.4Ec-00_003310.3.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3312469..3312546 -
Ec-00_003310.3.3Ec-00_003310.3.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3312860..3313042 -
Ec-00_003310.3.2Ec-00_003310.3.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3313584..3313665 -
Ec-00_003310.3.1Ec-00_003310.3.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3314234..3314598 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0033103UTR:Ec-00_003310.3Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_00 3310459..3310998 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003310.3CDS:Ec-00_003310.3Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 3310999..3311093 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0033105UTR:Ec-00_003310.3Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_00 3314479..3314598 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_003310.3 ID=Ec-00_003310.3|Name=Ec-00_003310.3|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=322bp
MAPRRTLPPWGLSEPNYGDTCSEPRCKTRSEMLRSRREEATTYARDQLNE
RRLCPPVEVPTDCCWWKLVEGYKENALEDLASSPRFQRYMSKRARAQAAE
RPDPFGTHEVRLRRAPKSCADKISRADPPPANAEVYLAPKRTVKRFTDGF
FEWKARLVPHGDLDERGKNKRVTRDECEPPFSSLSSSFTGCTIDPRSNIR
SPRQANASLQVTAHPSDKRSAAEVAQRAIQQQRAMWQAILASATNKSGRI
CCRDDDSAGTEGQGGGSSSGSRSSRRPLSSPGSVCSTSPTEVDPLGQLQM
RPPSVPPETTRRRYGRLCGQG*
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spliced messenger RNA

>Ec-00_003310.3 ID=Ec-00_003310.3|Name=Ec-00_003310.3|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1626bp|location=Sequence derived from alignment at chr_00:3310459..3314598- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
TTTGCCCTCACAAGACAGGCACCCTAACGGCGTGAAGGATACCGTTCAAA
CCCTTTGCAAGCAGCAAAACACGTACGCTCGACGATTGTGTTGCTCCCAC
AGCTGCGCGGAGCACTCAATATGGCACCTCGGCGTACCCTCCCTCCTTGG
GGACTGTCGGAGCCGAACTACGGAGACACATGTAGCGAACCGCGGTGTAA
GACTCGGTCGGAGATGCTTCGCAGCAGGCGGGAAGAGGCCACGACCTACG
CCCGAGATCAACTGAACGAGAGGAGGCTATGTCCGCCCGTGGAGGTGCCG
ACAGACTGCTGTTGGTGGAAGCTTGTCGAGGGCTACAAAGAGAACGCGCT
GGAAGATTTGGCGAGTTCTCCCAGGTTTCAAAGATACATGAGCAAGCGAG
CTCGGGCCCAAGCAGCAGAGCGTCCGGATCCCTTCGGTACACACGAGGTT
AGGCTCCGAAGAGCACCAAAGTCTTGCGCAGACAAAATATCCCGGGCGGA
CCCCCCACCCGCCAATGCTGAAGTGTACCTCGCTCCAAAGCGAACCGTGA
AACGCTTCACCGACGGTTTTTTCGAGTGGAAGGCGCGCCTAGTACCCCAT
GGAGATCTAGACGAGCGAGGCAAGAACAAGAGAGTTACGAGGGACGAGTG
TGAGCCCCCGTTCAGCTCACTTTCTTCCTCTTTTACGGGGTGCACCATTG
ACCCAAGGAGCAACATCCGTTCTCCCCGCCAGGCAAACGCCTCCCTTCAG
GTGACGGCTCACCCGTCAGATAAACGAAGCGCTGCGGAAGTTGCCCAGAG
GGCTATTCAGCAGCAGCGGGCAATGTGGCAGGCCATTCTAGCGTCTGCGA
CCAATAAGTCTGGCCGAATTTGCTGCCGCGACGATGATTCGGCGGGGACC
GAGGGACAAGGAGGCGGCAGCAGCAGCGGCAGCCGCAGCAGCCGCAGGCC
ACTATCATCACCGGGCTCTGTTTGTTCGACGAGCCCGACAGAAGTTGATC
CGCTGGGCCAGCTTCAGATGCGGCCGCCTTCCGTGCCCCCAGAAACTACT
CGCCGGCGCTACGGCCGGCTCTGCGGCCAAGGTTAAACCGAAGAAGAGAG
GGGTCTGCTGGCTTGTGTGTGTGTTTTCACCTTCTCGGGCAAGCATTGGG
GTGTAGAAGGGACTCGGCTTCGAAAAAAGTCCAAAGAGTGGAAGGGTGGG
ACGGGACTCTGCTATGTCACCTGCCTCGAGATCCACGTTGCCAGTTGACG
TTGCCAGATACGTGTGTCCACCATGTCGGTAATACATTAACTCATGCTAC
GAACTTCATACTTTAGATTGAGGATGGTTGGTTAAGGTGTTTTTTTTACG
TTGTTAGGGTGTTTGGTTGAAGGTTGTTTTGGAACGGGCTTGCACACAGC
TCGTTGAGAAATCGGTCCAGGGAACAAGACCTTCAATTCTATCCGTTGCA
GTATTTTGGTAGAGAGGTTGGATATTGGTCATCGTGCAAACAAAGAAAGG
TGGGAAGGAGAACGGCGGTTGGGGCAGGATGATTCAAAAAGTTCCCCTTG
GGGGTGGAATTTCCGTTTATAATGAACGTTGCCGTGTTGGGATCATGCAA
AAGCCCAACCGCATATCAGCTGCGGT
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protein sequence of Ec-00_003310.3

>Ec-00_003310.3 ID=Ec-00_003310.3|Name=Ec-00_003310.3|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=322bp
MAPRRTLPPWGLSEPNYGDTCSEPRCKTRSEMLRSRREEATTYARDQLNE
RRLCPPVEVPTDCCWWKLVEGYKENALEDLASSPRFQRYMSKRARAQAAE
RPDPFGTHEVRLRRAPKSCADKISRADPPPANAEVYLAPKRTVKRFTDGF
FEWKARLVPHGDLDERGKNKRVTRDECEPPFSSLSSSFTGCTIDPRSNIR
SPRQANASLQVTAHPSDKRSAAEVAQRAIQQQRAMWQAILASATNKSGRI
CCRDDDSAGTEGQGGGSSSGSRSSRRPLSSPGSVCSTSPTEVDPLGQLQM
RPPSVPPETTRRRYGRLCGQG*
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mRNA from alignment at chr_00:3310459..3314598-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_003310.3 ID=Ec-00_003310.3|Name=Ec-00_003310.3|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=4140bp|location=Sequence derived from alignment at chr_00:3310459..3314598- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
TTTGCCCTCACAAGACAGGCACCCTAACGGCGTGAAGGATACCGTTCAAA
CCCTTTGCAAGCAGCAAAACACGTACGCTCGACGATTGTGTTGCTCCCAC
AGCTGCGCGGAGCACTCAATATGGCACCTCGGCGTACCCTCCCTCCTTGG
GGACTGTCGGAGCCGAACTACGGAGACACATGTAGCGAACCGCGGTGTAA
GACTCGGTCGGAGATGCTTCGCAGCAGGCGGGAAGAGGCCACGACCTACG
CCCGAGATCAACTGAACGAGAGGAGGCTATGTCCGCCCGTGGAGGTGCCG
ACAGACTGCTGTTGGTGGAAGCTTGTCGAGGGCTACAAAGAGAACGCGCT
GGAAGATTTGGCGAGGTATGTGTGTGTGTGTATCCAAAGAACAGGAGCAT
GCAAAGGCGCCGTGGGTACTTGTATGCACGGGTCACAGATTGGAAGGAGA
AATGTGTTCGAATTGTTCCCGGCAAAGCAAGGCAATAGGAAGTTGAGAGG
CATAGACCATGTACGACACGAGCGTCGCAGTAACGCTCTTTGCAATCCGA
CGTGGTCCGGCCGCATGACAGCTACAGATTCCTGTTTTCCCTCTTAATCG
CTTAATCTTGTGCTGTGTCTCGACAGCACCCAAGGGCGGTGAGCAGCAGG
TATCAACCATGCAGTATTTTCTTTGCTCAGAGGAACAGCATTCCGGCGCT
TGTCCTTGGTCCCGTGTTCTCGAGTTTCTGTCTCTGTAGGCACGGTCCAG
ACGTTTACTGTAGGTCCTGATCACCACAAATTGTTATCAGCGCGATATTG
TGGCACCAACGGATTCGGACAAAGATGTATGTCACGAAATTCACCCGCAC
CTACTGTACAGTACAGTATCATGTCCCCCAACACCCCTTTTTACACAAAG
CTTGTGACAAACCTCCAACGCTATTGTTGACAGTTCTCCCAGGTTTCAAA
GATACATGAGCAAGCGAGCTCGGGCCCAAGCAGCAGAGCGTCCGGATCCC
TTCGGTACACACGAGGTACGTCAAATACGGCAGGCAATGACTGAATTCAG
TGCTTCAACAGAGTAACTTTGACTCGAAAATCGGGCATGGGGTGTAGTCG
AGTCACTGCTTGAGTTTTGTGCGTGCAGAACGATGGGCGTGATGCAACGC
GGACACAAGCTTTACTACTGTTACTGCATACATGTAGAATAACCACCTTG
TTTTCCCCAGTAAATAGGGCTGGAAGATGGGGCGCCCATGATATTTTCAC
GACGAGGCGGAGGATTGCAGTGTTCGGCCAGAAAGCATGCTTCAACACCT
TACTTGTAGGCCAATAACCATGGACAGAGCACATTCTTGATATGTCCAAA
GGGAAGGAGACAACCAGAAACGTCGAAAGGGCAACAGGCACAGATAATAC
TAGTATTGAATTTATTCTACAGTATTCCGACAGCGAAAAAGCTGATTCCG
TCACATAGCCCGAAGTTGCGCGCGGCTCCTTGAGGGCGTCGAGATCCGTT
CGGAATCACCGGGGGAAATATCTTACTCCTTGACGATTCTCAATGATAAT
ACACAGGTTAGGCTCCGAAGAGCACCAAAGTCTTGCGCAGACAAAATATC
CCGGGCGGACCCCCCACCCGCCAATGCTGAAGTGTACCTCGCTCCAAAGC
GAACCGTGAAACGCTTCACCGACGGTTTTTTCGAGTGGAAGGCGCGCCTA
GTACCCCATGGAGATCTAGACGAGCGAGGCAAGAACAAGGTGCAATTTGG
GATTCTGTAGAGTGTGTTCCTTGGTCGAACGGTGGAGGATCAAAATGCGA
TGGTAGCACTCCGCACAGCACTTCCGAGCGCATTCCGAGACAGAGAGGGG
TGTAACGGCCCAGCGCACCTGGTGGTTACCGCAGCTAGCATCAGTGTCAA
CACCTAACGTTGTGCAGTACCAGGCCCAAACCCTTTTTGCCCCGAAACTT
GTCGCCCAATGGTGGTTTGAAGAATAAGTATATGTACCTGGTAGGAAACA
ACAACCCGCCCACCGACGTGTTTTCCCGCTCGCGTCGTGCTCTTGTGAAC
AGAGAGTTACGAGGGACGAGTGTGAGCCCCCGTTCAGCTCACTTTCTTCC
TCTTTTACGGGGTGCACCATTGACCCAAGGGTGAGTAGGGGACCGTACCT
TTGTGCTGGTTTTATCCCGAACAAAAACAACTGCAGAAGCAATTTTCCGC
TGACTTGACACACTATTTATGTAGTTTGGACCGTGTTTGGATTCAATCGT
AGAGGAGGTTCTTGATTATTCAACCAAGTCCTTTGGGCACAAGCCGCGGG
CGCTATCTGCGTGCCTGTTTCTGTTTACGCAAGCACTACTGGAAATACAC
AGAAAGAGGTTACCATTGGACGAAGCACATACTTACTGCGGTGTGTTCAT
GCTACGTTGTCTCGCACAAGATGTGTGAACAGTACCGAAACAACGTGCAC
ACACATGCCATCAGTTGCTTAATCATCTCCCTTGCTTCACTGACTGTATT
CTTTGTCGGTGAACTCGAAAGAACCAAGGTGTCCTGTCCCAGACACTATC
GGCCGTTGGGCCACTCCCCGCCCAGCACTATATCCACTCTAAACATTCTG
CCACGCAAACTTGAGCGTAAACGTATAGTGATCGTCCGGACCGCACAATC
TGTACACGCACACGACCCCCTCTTGTCCGCAGAGCAACATCCGTTCTCCC
CGCCAGGCAAACGCCTCCCTTCAGGTGACGGCTCACCCGTCAGATAAACG
AAGCGCTGCGGAAGTTGCCCAGAGGGCTATTCAGCAGCAGCGGGCAATGT
GGCAGGCCATTCTAGCGTCTGCGACCAATAAGTCTGGCCGAATTTGCTGC
CGCGACGATGATTCGGCGGGGACCGAGGGACAAGGAGGCGGCAGCAGCAG
CGGCAGCCGCAGCAGCCGCAGGCCACTATCATCACCGGGCTCTGTTTGTT
CGACGAGCCCGACAGGTGAGCAACTTCATGCAGCAACGGCCTTCGTCCCA
CATACTGTTCCTGCCGCAGTTTTCCTTCAGCCTCTGTACGCGTTAGAGCA
CGGAAACAAGACAACGCGAAGGCTTCTGTGCGGAGAGAGACAACTGCTGT
TGTGCTGAACATTCCACTTGCCAAAACTGTTTTTCGTAATAAGCTTGAGT
TTCGTTGTGGCGTGTATTGTGCCCCTGTTGATGAAGCGATTGACATGACC
CTCCGGGACGGTGCTCATAGCTTGTTGAACCCGTAGAACTTTTGCATTGT
GCCAATATATAACTTATTTGCGGAGGATTGGTATGCGGCGAGGGGGAGTG
GGGGGAGTGGTGTAGCCCGGAGAGCGTATTTCTCACACGAAGAACACTCT
CTCGTCCACGTTAAAAAATGACGTGCACCATTCGGCGGTTTGTTGAAGCG
CAGGACGCAACAACAGCAGGTTCAAGGCACGCACTTACTTCCCCCCCCCC
GTACGCGCGCCTATCCTGCTACAACGGACGCGTGTCATGCTCATGTTTTC
AACAGAAGTTGATCCGCTGGGCCAGCTTCAGATGCGGCCGCCTTCCGTGC
CCCCAGAAACTACTCGCCGGCGCTACGGCCGGCTCTGCGGCCAAGGTTAA
ACCGAAGAAGAGAGGGGTCTGCTGGCTTGTGTGTGTGTTTTCACCTTCTC
GGGCAAGCATTGGGGTGTAGAAGGGACTCGGCTTCGAAAAAAGTCCAAAG
AGTGGAAGGGTGGGACGGGACTCTGCTATGTCACCTGCCTCGAGATCCAC
GTTGCCAGTTGACGTTGCCAGATACGTGTGTCCACCATGTCGGTAATACA
TTAACTCATGCTACGAACTTCATACTTTAGATTGAGGATGGTTGGTTAAG
GTGTTTTTTTTACGTTGTTAGGGTGTTTGGTTGAAGGTTGTTTTGGAACG
GGCTTGCACACAGCTCGTTGAGAAATCGGTCCAGGGAACAAGACCTTCAA
TTCTATCCGTTGCAGTATTTTGGTAGAGAGGTTGGATATTGGTCATCGTG
CAAACAAAGAAAGGTGGGAAGGAGAACGGCGGTTGGGGCAGGATGATTCA
AAAAGTTCCCCTTGGGGGTGGAATTTCCGTTTATAATGAACGTTGCCGTG
TTGGGATCATGCAAAAGCCCAACCGCATATCAGCTGCGGT
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Coding sequence (CDS) from alignment at chr_00:3310459..3314598-

>Ec-00_003310.3 ID=Ec-00_003310.3|Name=Ec-00_003310.3|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=966bp|location=Sequence derived from alignment at chr_00:3310459..3314598- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGCACCTCGGCGTACCCTCCCTCCTTGGGGACTGTCGGAGCCGAACTA
CGGAGACACATGTAGCGAACCGCGGTGTAAGACTCGGTCGGAGATGCTTC
GCAGCAGGCGGGAAGAGGCCACGACCTACGCCCGAGATCAACTGAACGAG
AGGAGGCTATGTCCGCCCGTGGAGGTGCCGACAGACTGCTGTTGGTGGAA
GCTTGTCGAGGGCTACAAAGAGAACGCGCTGGAAGATTTGGCGAGTTCTC
CCAGGTTTCAAAGATACATGAGCAAGCGAGCTCGGGCCCAAGCAGCAGAG
CGTCCGGATCCCTTCGGTACACACGAGGTTAGGCTCCGAAGAGCACCAAA
GTCTTGCGCAGACAAAATATCCCGGGCGGACCCCCCACCCGCCAATGCTG
AAGTGTACCTCGCTCCAAAGCGAACCGTGAAACGCTTCACCGACGGTTTT
TTCGAGTGGAAGGCGCGCCTAGTACCCCATGGAGATCTAGACGAGCGAGG
CAAGAACAAGAGAGTTACGAGGGACGAGTGTGAGCCCCCGTTCAGCTCAC
TTTCTTCCTCTTTTACGGGGTGCACCATTGACCCAAGGAGCAACATCCGT
TCTCCCCGCCAGGCAAACGCCTCCCTTCAGGTGACGGCTCACCCGTCAGA
TAAACGAAGCGCTGCGGAAGTTGCCCAGAGGGCTATTCAGCAGCAGCGGG
CAATGTGGCAGGCCATTCTAGCGTCTGCGACCAATAAGTCTGGCCGAATT
TGCTGCCGCGACGATGATTCGGCGGGGACCGAGGGACAAGGAGGCGGCAG
CAGCAGCGGCAGCCGCAGCAGCCGCAGGCCACTATCATCACCGGGCTCTG
TTTGTTCGACGAGCCCGACAGAAGTTGATCCGCTGGGCCAGCTTCAGATG
CGGCCGCCTTCCGTGCCCCCAGAAACTACTCGCCGGCGCTACGGCCGGCT
CTGCGGCCAAGGTTAA
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Synonyms
The feature 'Ec-00_003310.3' has the following synonyms
Synonym
Esi217_0053
Esi_217_0053