Ec-00_003250.5 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_003250.5
Unique NameEc-00_003250.5
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length191
Homology
[Close]
BLAST of Ec-00_003250.5 vs. uniprot
Match: D7FN01_ECTSI (Hpt domain protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FN01_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 6.200e-14
Identity = 39/44 (88.64%), Postives = 39/44 (88.64%), Query Frame = 3 
Query: 1149 PSRCNADTQHEAHSIKGAAANLMCHRLRLSALYLERAGQVGTRL 1280
            P     DTQHEAHSIKGAAANLMCHRLRLSALYLERAGQVGTRL
Sbjct:   77 PRGAMRDTQHEAHSIKGAAANLMCHRLRLSALYLERAGQVGTRL 120
[Close]
BLAST of Ec-00_003250.5 vs. uniprot
Match: A0A7S2XTL1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XTL1_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 1.720e-6
Identity = 28/43 (65.12%), Postives = 34/43 (79.07%), Query Frame = 3 
Query: 1149 PSRCNADTQHEAHSIKGAAANLMCHRLRLSALYLERAGQVGTR 1277
            PSR     + +AHSIKGAAANLMCHRLR +AL+LE+AG  GT+
Sbjct:  140 PSRDTETVRQKAHSIKGAAANLMCHRLREAALFLEKAGMSGTK 182
The following BLAST results are available for this feature:
BLAST of Ec-00_003250.5 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FN01_ECTSI6.200e-1488.64Hpt domain protein n=2 Tax=Ectocarpus TaxID=2879 R... [more]
A0A7S2XTL1_9STRA1.720e-665.12Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:3266891..3268844 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length1285
Hectar predicted targeting categorymitochondrion
Gene idEc-00_003250.5
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_003250Ec-00_003250Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 3264954..3268844 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003250.5.3Ec-00_003250.5.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3266891..3267007 -
Ec-00_003250.5.2Ec-00_003250.5.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3267228..3267335 -
Ec-00_003250.5.1Ec-00_003250.5.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3267785..3268844 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0032503UTR:Ec-00_003250.5Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_00 3266891..3267007 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003250.5CDS:Ec-00_003250.5Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 3268272..3268844 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003250.5Ec-00_003250.5Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 3268272..3268844 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_003250.5 ID=Ec-00_003250.5|Name=Ec-00_003250.5|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=191bp
MMSMISLLVRCRTAERVVFGARPEHLLHIRTYAFFKQIPARTSAVTPCQV
APDPGKFDTALSLPQDKEGELRATVEPPQQSASVGDDSLVQNHPPAEAAT
ATVRAAEAQALNVDSSPEQINLSTASSEDPRSATPVPKEEGKASSQQPDG
NMEKAGDGDKKASEVAVAAQICVLIKQESILVDIACLPSS*
back to top

spliced messenger RNA

>Ec-00_003250.5 ID=Ec-00_003250.5|Name=Ec-00_003250.5|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1285bp|location=Sequence derived from alignment at chr_00:3266891..3268844- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGTCCATGATATCGCTTCTTGTGCGCTGCAGGACGGCTGAGCGAGT
CGTTTTCGGAGCGCGCCCCGAACATTTATTGCATATCCGCACATACGCGT
TTTTCAAGCAGATTCCGGCGAGAACATCAGCAGTGACTCCGTGCCAAGTG
GCTCCCGATCCCGGGAAATTTGACACGGCGCTCAGTCTACCTCAAGACAA
GGAAGGAGAACTCCGCGCAACCGTCGAGCCCCCACAACAAAGCGCATCCG
TGGGCGACGACTCTTTGGTTCAAAATCACCCACCAGCGGAAGCGGCAACG
GCAACGGTAAGAGCGGCGGAAGCGCAAGCGCTCAACGTCGATTCTTCTCC
CGAGCAAATCAACCTCAGCACAGCGAGTAGCGAAGATCCCCGATCTGCTA
CCCCTGTTCCGAAAGAGGAGGGAAAGGCGTCGAGTCAGCAGCCGGACGGC
AACATGGAGAAGGCGGGTGACGGAGACAAGAAAGCGTCCGAGGTAGCGGT
GGCAGCGCAGATATGTGTGTTGATAAAACAGGAGAGTATCCTTGTTGACA
TTGCGTGTTTACCTTCCTCGTAAGGATGTCCGAACCTTTCAGTTTTCAAT
ACTTTCGGAACTATGATATGGTTCTTCCAGTATTTCCTGTGACGCATCCA
CTGCGTCTAGCGAAGGATTGCACGGCTAGCGAAGGATTGCACGGCTCTTG
CCGATAGTACTAGCTTGCTCGATACACGGACGTGCATGCTGTGCCCTGGA
TCCTCTGTGATAAAGATTGCACCGTGCCACCATCGTACGGGAGCATTCCA
ACACGTGAGACGATTCCACGTCACAGGTAAAGTGCGACGGGGCCTGAATG
TGTGTCGAATAAATACACCACCGCTCTTGCTTCTACCCTGGGTGAAACAA
GCTGCTGCTGACGCGCTGATTCACCGCCGGCCGTCCGCCGTGGTAACGTA
TACTGCTGTAGAAGTCCAGCGACCAAGGGAGTTCGGCAAATCTCGTAGGA
GTGCAGCTAGGAGTGCCGGATGACACGGAGGTCATTGATTGGGCCGCGGC
CGTCGATCAGTGTTCGGGAGACGTTTCTTTCCTTGAGGAACTGCTTGTGG
ACCTGTGGAACGAGTCCAACGCGCATATGGAGCAACTTAGGGAATTCATC
CCTCGCGGTGCAATGCGTGACACACAACATGAAGCTCATTCGATCAAGGG
TGCGGCCGCGAATCTTATGTGCCATCGCTTGCGCCTTTCCGCATTATACC
TGGAGAGGGCAGGCCAAGTTGGCACCAGGCTACAG
back to top

protein sequence of Ec-00_003250.5

>Ec-00_003250.5 ID=Ec-00_003250.5|Name=Ec-00_003250.5|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=191bp
MMSMISLLVRCRTAERVVFGARPEHLLHIRTYAFFKQIPARTSAVTPCQV
APDPGKFDTALSLPQDKEGELRATVEPPQQSASVGDDSLVQNHPPAEAAT
ATVRAAEAQALNVDSSPEQINLSTASSEDPRSATPVPKEEGKASSQQPDG
NMEKAGDGDKKASEVAVAAQICVLIKQESILVDIACLPSS*
back to top

mRNA from alignment at chr_00:3266891..3268844-

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_003250.5 ID=Ec-00_003250.5|Name=Ec-00_003250.5|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1954bp|location=Sequence derived from alignment at chr_00:3266891..3268844- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGATGTCCATGATATCGCTTCTTGTGCGCTGCAGGACGGCTGAGCGAGT
CGTTTTCGGAGCGCGCCCCGAACATTTATTGCATATCCGCACATACGCGT
TTTTCAAGCAGATTCCGGCGAGAACATCAGCAGTGACTCCGTGCCAAGTG
GCTCCCGATCCCGGGAAATTTGACACGGCGCTCAGTCTACCTCAAGACAA
GGAAGGAGAACTCCGCGCAACCGTCGAGCCCCCACAACAAAGCGCATCCG
TGGGCGACGACTCTTTGGTTCAAAATCACCCACCAGCGGAAGCGGCAACG
GCAACGGTAAGAGCGGCGGAAGCGCAAGCGCTCAACGTCGATTCTTCTCC
CGAGCAAATCAACCTCAGCACAGCGAGTAGCGAAGATCCCCGATCTGCTA
CCCCTGTTCCGAAAGAGGAGGGAAAGGCGTCGAGTCAGCAGCCGGACGGC
AACATGGAGAAGGCGGGTGACGGAGACAAGAAAGCGTCCGAGGTAGCGGT
GGCAGCGCAGATATGTGTGTTGATAAAACAGGAGAGTATCCTTGTTGACA
TTGCGTGTTTACCTTCCTCGTAAGGATGTCCGAACCTTTCAGTTTTCAAT
ACTTTCGGAACTATGATATGGTTCTTCCAGTATTTCCTGTGACGCATCCA
CTGCGTCTAGCGAAGGATTGCACGGCTAGCGAAGGATTGCACGGCTCTTG
CCGATAGTACTAGCTTGCTCGATACACGGACGTGCATGCTGTGCCCTGGA
TCCTCTGTGATAAAGATTGCACCGTGCCACCATCGTACGGGAGCATTCCA
ACACGTGAGACGATTCCACGTCACAGGTAAAGTGCGACGGGGCCTGAATG
TGTGTCGAATAAATACACCACCGCTCTTGCTTCTACCCTGGGTGAAACAA
GCTGCTGCTGACGCGCTGATTCACCGCCGGCCGTCCGCCGTGGTAACGTA
TACTGCTGTAGAAGTCCAGCGACCAAGGGAGTTCGGCAAATCTCGTAGGA
GTGCAGCTAGGAGTGCCGGATGACACGGAGGTCATTGATTGGGCCGCGGC
CGTCGATCAGGTACTTGTACGTTGCGGTGGTTGAAGGTCCGGCATGTGGG
TCGGAGATGGTAGTCACGTGAGACTTGGATTCGTACGCCACAAATGATCT
CCTTTGGTTGTGTTGTTTTACCATGTGCATGGATGCCAGATGCAGTAGAG
AAGCTTATTGTAGCTTGCCTCACGCGTGCAGCTCGTTCTGTTCCCATGTG
GAAGCTCTTAAAAACTAACAACACTACCGACTGAATAGACAGTAACCACG
CTTGTGTGCCGACATATCCGGAGCGAATTTATGTCACGCGACCCCCCTCT
CTAGCGCTAACGGGTGGATCTCAGGGCTTCTTTTGAACATTGTTCACATC
GGCAGATAGATAGACTTGAGTGAGGTTGACATCCGCCAGAGCACGTTCAT
GTCGCTGACCTCCCCGCTGTTGTCGACCGTTTGGGCCTACGTTTCGCGTC
ACGAAACAGTGTTCGGGAGACGTTTCTTTCCTTGAGGAACTGCTTGTGGA
CCTGTGGAACGAGTCCAACGCGCATATGGAGCAACTTAGGGAATTCATCC
CTCGCGGTGCAATGCGTGTGAGTGTTTTTGTGTGCGCAACCACCCACAAG
CAGCGTGGAGACCATTTGTGGTTCGTGTGTTATGAGGAGTGTAGGTGTCA
AGAACGCATGTCGATGGCCACCATCTCTTTTTTCCGCTTGCCATTCCCTT
GCTGCCCACTTATCTCACGATTTCCCCTCATGCCCAAGCTCTTTCATTCT
GGTGTCTGAAAAAACGTTGACGGTTTGCTATGTACAGGACACACAACATG
AAGCTCATTCGATCAAGGGTGCGGCCGCGAATCTTATGTGCCATCGCTTG
CGCCTTTCCGCATTATACCTGGAGAGGGCAGGCCAAGTTGGCACCAGGCT
ACAG
back to top

Coding sequence (CDS) from alignment at chr_00:3266891..3268844-

>Ec-00_003250.5 ID=Ec-00_003250.5|Name=Ec-00_003250.5|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=573bp|location=Sequence derived from alignment at chr_00:3266891..3268844- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGATGTCCATGATATCGCTTCTTGTGCGCTGCAGGACGGCTGAGCGAGT
CGTTTTCGGAGCGCGCCCCGAACATTTATTGCATATCCGCACATACGCGT
TTTTCAAGCAGATTCCGGCGAGAACATCAGCAGTGACTCCGTGCCAAGTG
GCTCCCGATCCCGGGAAATTTGACACGGCGCTCAGTCTACCTCAAGACAA
GGAAGGAGAACTCCGCGCAACCGTCGAGCCCCCACAACAAAGCGCATCCG
TGGGCGACGACTCTTTGGTTCAAAATCACCCACCAGCGGAAGCGGCAACG
GCAACGGTAAGAGCGGCGGAAGCGCAAGCGCTCAACGTCGATTCTTCTCC
CGAGCAAATCAACCTCAGCACAGCGAGTAGCGAAGATCCCCGATCTGCTA
CCCCTGTTCCGAAAGAGGAGGGAAAGGCGTCGAGTCAGCAGCCGGACGGC
AACATGGAGAAGGCGGGTGACGGAGACAAGAAAGCGTCCGAGGTAGCGGT
GGCAGCGCAGATATGTGTGTTGATAAAACAGGAGAGTATCCTTGTTGACA
TTGCGTGTTTACCTTCCTCGTAA
back to top
Synonyms
The feature 'Ec-00_003250.5' has the following synonyms
Synonym
Esi898_0002
Esi_898_0002