Ec-00_003240.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_003240.1
Unique NameEc-00_003240.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length70
Homology
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BLAST of Ec-00_003240.1 vs. uniprot
Match: D7FNW7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNW7_ECTSI)

HSP 1 Score: 137 bits (344), Expect = 5.720e-41
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1 
Query:    1 MSGCCCVPLYFSRCCVPAAFETSHPIIHPLSRMVMKSGRQKKSPPALRASLVVAVSASSPNSYPRATAQ 207
            MSGCCCVPLYFSRCCVPAAFETSHPIIHPLSRMVMKSGRQKKSPPALRASLVVAVSASSPNSYPRATAQ
Sbjct:    1 MSGCCCVPLYFSRCCVPAAFETSHPIIHPLSRMVMKSGRQKKSPPALRASLVVAVSASSPNSYPRATAQ 69
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BLAST of Ec-00_003240.1 vs. uniprot
Match: A0A6H5L7K6_9PHAE (PseudoU_synth_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L7K6_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 2.210e-13
Identity = 31/34 (91.18%), Postives = 31/34 (91.18%), Query Frame = -3 
Query:  104 ARLHGDSCWEKTQTPQPQGWRVARGGFSFAVHSS 205
            ARLHGDSCWEKTQTPQPQGWRV RGG SFA HSS
Sbjct:   54 ARLHGDSCWEKTQTPQPQGWRVTRGGCSFAAHSS 87
The following BLAST results are available for this feature:
BLAST of Ec-00_003240.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FNW7_ECTSI5.720e-41100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L7K6_9PHAE2.210e-1391.18PseudoU_synth_2 domain-containing protein n=2 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:3254774..3254983 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length210
Hectar predicted targeting categoryother localisation
Gene idEc-00_003240.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_003240Ec-00_003240Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 3254774..3254983 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003240.1.1Ec-00_003240.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3254774..3254983 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003240.1CDS:Ec-00_003240.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 3254774..3254983 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003240.1Ec-00_003240.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 3254774..3254983 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_003240.1 ID=Ec-00_003240.1|Name=Ec-00_003240.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=70bp
MSGCCCVPLYFSRCCVPAAFETSHPIIHPLSRMVMKSGRQKKSPPALRAS
LVVAVSASSPNSYPRATAQ*
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spliced messenger RNA

>Ec-00_003240.1 ID=Ec-00_003240.1|Name=Ec-00_003240.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=210bp|location=Sequence derived from alignment at chr_00:3254774..3254983+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGGCTGTTGTTGCGTCCCGCTCTATTTTTCTCGCTGTTGCGTGCC
TGCCGCCTTCGAGACGAGCCATCCGATAATTCATCCTCTGTCCCGGATGG
TGATGAAGAGTGGACGGCAAAAGAAAAGCCCCCCCGCGCTACGCGCCAGC
CTTGTGGTTGCGGTGTCTGCGTCTTCTCCCAACAGCTATCCCCGTGCAAC
CGCGCAGTAG
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protein sequence of Ec-00_003240.1

>Ec-00_003240.1 ID=Ec-00_003240.1|Name=Ec-00_003240.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=70bp
MSGCCCVPLYFSRCCVPAAFETSHPIIHPLSRMVMKSGRQKKSPPALRAS
LVVAVSASSPNSYPRATAQ*
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mRNA from alignment at chr_00:3254774..3254983+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_003240.1 ID=Ec-00_003240.1|Name=Ec-00_003240.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=210bp|location=Sequence derived from alignment at chr_00:3254774..3254983+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGAGCGGCTGTTGTTGCGTCCCGCTCTATTTTTCTCGCTGTTGCGTGCC
TGCCGCCTTCGAGACGAGCCATCCGATAATTCATCCTCTGTCCCGGATGG
TGATGAAGAGTGGACGGCAAAAGAAAAGCCCCCCCGCGCTACGCGCCAGC
CTTGTGGTTGCGGTGTCTGCGTCTTCTCCCAACAGCTATCCCCGTGCAAC
CGCGCAGTAG
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Coding sequence (CDS) from alignment at chr_00:3254774..3254983+

>Ec-00_003240.1 ID=Ec-00_003240.1|Name=Ec-00_003240.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=210bp|location=Sequence derived from alignment at chr_00:3254774..3254983+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGAGCGGCTGTTGTTGCGTCCCGCTCTATTTTTCTCGCTGTTGCGTGCC
TGCCGCCTTCGAGACGAGCCATCCGATAATTCATCCTCTGTCCCGGATGG
TGATGAAGAGTGGACGGCAAAAGAAAAGCCCCCCCGCGCTACGCGCCAGC
CTTGTGGTTGCGGTGTCTGCGTCTTCTCCCAACAGCTATCCCCGTGCAAC
CGCGCAGTAG
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Synonyms
The feature 'Ec-00_003240.1' has the following synonyms
Synonym
Esi1892_0001
Esi_1892_0001