Ec-00_003190.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_003190.1
Unique NameEc-00_003190.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length68
Homology
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BLAST of Ec-00_003190.1 vs. uniprot
Match: D7FP60_ECTSI (SUMO deconjugating cysteine peptidase Ulp2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP60_ECTSI)

HSP 1 Score: 144 bits (364), Expect = 4.390e-44
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 1 
Query:    1 MGAFYAKLSNRSFSDFDAAYSSVQRWYGGVNIFTKKFVLVPVVEDLHWSLSCLCNLDQLQTRVGECG 201
            MGAFYAKLSNRSFSDFDAAYSSVQRWYGGVNIFTKKFVLVPVVEDLHWSLSCLCNLDQLQTRVGECG
Sbjct:    1 MGAFYAKLSNRSFSDFDAAYSSVQRWYGGVNIFTKKFVLVPVVEDLHWSLSCLCNLDQLQTRVGECG 67
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BLAST of Ec-00_003190.1 vs. uniprot
Match: D7FI86_ECTSI (SUMO deconjugating cysteine peptidase Ulp2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI86_ECTSI)

HSP 1 Score: 128 bits (322), Expect = 1.420e-37
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1 
Query:    1 MGAFYAKLSNRSFSDFDAAYSSVQRWYGGVNIFTKKFVLVPVVEDLHWSLSCLCNLDQLQ 180
            MGAFYAKLSNRSFSDFDAAYSSVQRWYGGVNIFTKKFVLVPVVEDLHWSLSCLCNLDQLQ
Sbjct:    1 MGAFYAKLSNRSFSDFDAAYSSVQRWYGGVNIFTKKFVLVPVVEDLHWSLSCLCNLDQLQ 60
[Close]
BLAST of Ec-00_003190.1 vs. uniprot
Match: A0A6H5KTD8_9PHAE (ULP_PROTEASE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTD8_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 2.900e-18
Identity = 38/57 (66.67%), Postives = 45/57 (78.95%), Query Frame = 1 
Query:   10 FYAKLSNRSFSDFDAAYSSVQRWYGGVNIFTKKFVLVPVVEDLHWSLSCLCNLDQLQ 180
            F+ KL+     DFDAAYS VQ W   V++F KKFVLVPVVEDLHWSL+CLCNLD+L+
Sbjct:  710 FFTKLTESEIYDFDAAYSKVQHWTRSVDLFKKKFVLVPVVEDLHWSLACLCNLDKLE 766
[Close]
BLAST of Ec-00_003190.1 vs. uniprot
Match: D8LDN6_ECTSI (ULP_PROTEASE domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDN6_ECTSI)

HSP 1 Score: 85.9 bits (211), Expect = 5.400e-18
Identity = 37/57 (64.91%), Postives = 45/57 (78.95%), Query Frame = 1 
Query:   10 FYAKLSNRSFSDFDAAYSSVQRWYGGVNIFTKKFVLVPVVEDLHWSLSCLCNLDQLQ 180
            F+ KL+     DFDAAYS VQ W   V++F KKFVLVPVVED+HWSL+CLCNLD+L+
Sbjct:  408 FFTKLTESKIYDFDAAYSKVQHWTRNVDLFKKKFVLVPVVEDMHWSLACLCNLDKLE 464
[Close]
BLAST of Ec-00_003190.1 vs. uniprot
Match: D7FWD8_ECTSI (SUMO deconjugating cysteine peptidase Ulp2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWD8_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 1.700e-14
Identity = 31/65 (47.69%), Postives = 47/65 (72.31%), Query Frame = 1 
Query:    7 AFYAKLSNRSFSDFDAAYSSVQRWYGGVNIFTKKFVLVPVVEDLHWSLSCLCNLDQLQTRVGECG 201
            +F+ KL  +   +F+AAY  V+RW   V++F+ KFV+VPVVED HW L+CLCNL++L+ +  + G
Sbjct:  245 SFFTKLVEKDIDEFNAAYGGVKRWSRHVDLFSMKFVMVPVVEDEHWRLACLCNLNKLEAKWKDTG 309
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BLAST of Ec-00_003190.1 vs. uniprot
Match: W7TVQ3_9STRA (Sentrin-specific protease 7 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TVQ3_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 3.210e-11
Identity = 29/48 (60.42%), Postives = 39/48 (81.25%), Query Frame = 1 
Query:   46 FDAAYSSVQRWYGGVNIFTKKFVLVPVVEDLHWSLSCLCNLDQLQTRV 189
            ++AA+S VQRW   V++F+KK VLVP+ E LHWSL+ LCNLDQ+Q+ V
Sbjct:  466 YEAAHSLVQRWTKNVDLFSKKMVLVPINEALHWSLAVLCNLDQVQSLV 513
[Close]
BLAST of Ec-00_003190.1 vs. uniprot
Match: A0A4D9DAN1_9STRA (ULP_PROTEASE domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DAN1_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 3.220e-11
Identity = 29/48 (60.42%), Postives = 39/48 (81.25%), Query Frame = 1 
Query:   46 FDAAYSSVQRWYGGVNIFTKKFVLVPVVEDLHWSLSCLCNLDQLQTRV 189
            ++AA+S VQRW   V++F+KK VLVP+ E LHWSL+ LCNLDQ+Q+ V
Sbjct:  767 YEAAHSLVQRWTKNVDLFSKKMVLVPINEALHWSLAVLCNLDQVQSLV 814
[Close]
BLAST of Ec-00_003190.1 vs. uniprot
Match: A0A165CUK6_9BASI (Cysteine proteinase n=1 Tax=Calocera cornea HHB12733 TaxID=1353952 RepID=A0A165CUK6_9BASI)

HSP 1 Score: 64.7 bits (156), Expect = 1.500e-10
Identity = 27/52 (51.92%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:   10 FYAKLSNRSFSDFDAAYSSVQRWYGGVNIFTKKFVLVPVVEDLHWSLSCLCN 165
            FY K+SN+   DFDA Y SV++W   V+IF KK+++VP+ E LHW L+ +CN
Sbjct:   83 FYKKISNK---DFDAGYESVRKWTSKVDIFAKKYIIVPINEHLHWYLAIICN 131
[Close]
BLAST of Ec-00_003190.1 vs. uniprot
Match: A0A7S3ZZX5_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZZX5_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 4.400e-9
Identity = 25/45 (55.56%), Postives = 35/45 (77.78%), Query Frame = 1 
Query:   55 AYSSVQRWYGGVNIFTKKFVLVPVVEDLHWSLSCLCNLDQLQTRV 189
            A++ V+RW  GV++F KKF+LVPVVEDLHWSL+ +C+  +L  R 
Sbjct:  130 AHARVERWTRGVDVFAKKFLLVPVVEDLHWSLAIVCHPGELAKRA 174
[Close]
BLAST of Ec-00_003190.1 vs. uniprot
Match: A0A7S4A0P2_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A0P2_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 4.530e-9
Identity = 25/45 (55.56%), Postives = 35/45 (77.78%), Query Frame = 1 
Query:   55 AYSSVQRWYGGVNIFTKKFVLVPVVEDLHWSLSCLCNLDQLQTRV 189
            A++ V+RW  GV++F KKF+LVPVVEDLHWSL+ +C+  +L  R 
Sbjct:  162 AHARVERWTRGVDVFAKKFLLVPVVEDLHWSLAIVCHPGELAKRA 206
The following BLAST results are available for this feature:
BLAST of Ec-00_003190.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FP60_ECTSI4.390e-44100.00SUMO deconjugating cysteine peptidase Ulp2 n=1 Tax... [more]
D7FI86_ECTSI1.420e-37100.00SUMO deconjugating cysteine peptidase Ulp2 n=1 Tax... [more]
A0A6H5KTD8_9PHAE2.900e-1866.67ULP_PROTEASE domain-containing protein n=1 Tax=Ect... [more]
D8LDN6_ECTSI5.400e-1864.91ULP_PROTEASE domain-containing protein n=1 Tax=Ect... [more]
D7FWD8_ECTSI1.700e-1447.69SUMO deconjugating cysteine peptidase Ulp2 n=1 Tax... [more]
W7TVQ3_9STRA3.210e-1160.42Sentrin-specific protease 7 n=1 Tax=Nannochloropsi... [more]
A0A4D9DAN1_9STRA3.220e-1160.42ULP_PROTEASE domain-containing protein n=1 Tax=Nan... [more]
A0A165CUK6_9BASI1.500e-1051.92Cysteine proteinase n=1 Tax=Calocera cornea HHB127... [more]
A0A7S3ZZX5_9STRA4.400e-955.56Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S4A0P2_9STRA4.530e-955.56Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:3225582..3226328 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.8
Seed ortholog evalue2.1e-15
Seed eggNOG ortholog2880.D8LDN6
Length204
KEGG koko:K08596
Hectar predicted targeting categoryother localisation
Gene idEc-00_003190.1
GOsGO:0000075,GO:0000278,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006276,GO:0006323,GO:0006464,GO:0006508,GO:0006807,GO:0006996,GO:0007049,GO:0007088,GO:0007093,GO:0007094,GO:0007346,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0009987,GO:0010564,GO:0010639,GO:0010948,GO:0010965,GO:0016043,GO:0016787,GO:0016926,GO:0016929,GO:0018193,GO:0018205,GO:0019538,GO:0019783,GO:0022402,GO:0030071,GO:0030261,GO:0031577,GO:0033043,GO:0033044,GO:0033045,GO:0033046,GO:0033047,GO:0033048,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0045786,GO:0045839,GO:0045841,GO:0045930,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051128,GO:0051129,GO:0051276,GO:0051726,GO:0051783,GO:0051784,GO:0051983,GO:0051985,GO:0065007,GO:0070011,GO:0070122,GO:0070138,GO:0070140,GO:0070646,GO:0070647,GO:0071103,GO:0071173,GO:0071174,GO:0071704,GO:0071840,GO:0140096,GO:1901564,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902099,GO:1902100,GO:1903047,GO:1905818,GO:1905819,GO:2000816,GO:2001251
EggNOG free text desc.protein modification by small protein removal
EggNOG OGsCOG5160@1,KOG0779@2759
EC3.4.22.68
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_003190Ec-00_003190Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 3225582..3226328 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003190.1.3Ec-00_003190.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3225582..3225605 -
Ec-00_003190.1.2Ec-00_003190.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3225680..3225808 -
Ec-00_003190.1.1Ec-00_003190.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3226278..3226328 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003190.1CDS:Ec-00_003190.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 3225582..3225605 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003190.1Ec-00_003190.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 3225582..3226328 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_003190.1 ID=Ec-00_003190.1|Name=Ec-00_003190.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=68bp
MGAFYAKLSNRSFSDFDAAYSSVQRWYGGVNIFTKKFVLVPVVEDLHWSL
SCLCNLDQLQTRVGECG*
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spliced messenger RNA

>Ec-00_003190.1 ID=Ec-00_003190.1|Name=Ec-00_003190.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=204bp|location=Sequence derived from alignment at chr_00:3225582..3226328- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCGCCTTCTACGCCAAGCTTTCCAATAGGAGCTTCTCCGATTTCGA
TGCGGCTTACAGCAGTGTGCAGCGCTGGTACGGGGGCGTGAATATCTTCA
CCAAGAAGTTCGTCTTGGTGCCGGTGGTAGAGGACTTGCACTGGAGCCTC
TCGTGCCTCTGCAACCTTGACCAACTCCAGACACGCGTCGGGGAATGCGG
GTAG
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protein sequence of Ec-00_003190.1

>Ec-00_003190.1 ID=Ec-00_003190.1|Name=Ec-00_003190.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=68bp
MGAFYAKLSNRSFSDFDAAYSSVQRWYGGVNIFTKKFVLVPVVEDLHWSL
SCLCNLDQLQTRVGECG*
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mRNA from alignment at chr_00:3225582..3226328-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_003190.1 ID=Ec-00_003190.1|Name=Ec-00_003190.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=747bp|location=Sequence derived from alignment at chr_00:3225582..3226328- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGGCGCCTTCTACGCCAAGCTTTCCAATAGGAGCTTCTCCGATTTCGA
TGTAAGCCCTAACCTAGTGAGAAGCGTTACGGGGTTTCTGTTAGCGCCGA
GCGCGATTGCCGCTGGCCCTGGAACGTGGCGGTGCTGGTTACTTGTAGCA
GGCGACGGCGCTACATGCCTAGACGAAATAAGTCAATGTTGAGAGTTGAA
GTTAATGCGCTCATTTCGTGTCACTTTCATCGCTATCCAGATGCCACCAC
GGCCCACTTGTTCCAAGTTTTGTATCTCCTTCATGAGCCCCTAGGCCTAG
GGTGCAACGTACGCATAGCTGGGTGAAACAATTACTTCGTACTTCATCTA
ATTTTCCTTCACCCCGCACAAGGAGGTGTTCGTTTGTGGCACCCGTCACC
CCCTACCGGGGTGTCGATGACCGCGGCATTGCGCGGGATTTGAGCACTGA
TGTACATATCTACAACTTATTAACTCCATCACTATTTCCCGAATGCGCTA
ACCCCAACGGCTGTTCTCAGGCGGCTTACAGCAGTGTGCAGCGCTGGTAC
GGGGGCGTGAATATCTTCACCAAGAAGTTCGTCTTGGTGCCGGTGGTAGA
GGACTTGCACTGGAGCCTCTCGTGCCTCTGCAACCTTGACCAACTCCAGG
TACGTACCGTCTCCTCCACCGTATATAGGAACTGTATCCCTTTGACGGCG
AATGCTTTTTACGAGCCTGGCAGACACGCGTCGGGGAATGCGGGTAG
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Coding sequence (CDS) from alignment at chr_00:3225582..3226328-

>Ec-00_003190.1 ID=Ec-00_003190.1|Name=Ec-00_003190.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=204bp|location=Sequence derived from alignment at chr_00:3225582..3226328- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGGCGCCTTCTACGCCAAGCTTTCCAATAGGAGCTTCTCCGATTTCGA
TGCGGCTTACAGCAGTGTGCAGCGCTGGTACGGGGGCGTGAATATCTTCA
CCAAGAAGTTCGTCTTGGTGCCGGTGGTAGAGGACTTGCACTGGAGCCTC
TCGTGCCTCTGCAACCTTGACCAACTCCAGACACGCGTCGGGGAATGCGG
GTAG
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Synonyms
The feature 'Ec-00_003190.1' has the following synonyms
Synonym
Esi1869_0001
Esi_1869_0001