Ec-00_003180.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_003180.1
Unique NameEc-00_003180.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length137
Homology
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BLAST of Ec-00_003180.1 vs. uniprot
Match: D7FP59_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP59_ECTSI)

HSP 1 Score: 295 bits (754), Expect = 2.110e-101
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1 
Query:    1 MIVLTPLPIAPQLSCDRQFAFRSNQDADDAFLERPWSFGYEDKWDAFMRRASHEFAAKVPYMVVPGNHEAECHSPACLSSPRRLNVSCMPVTLRAPAHTCTLACRRTCCSCDRVVYGFRSSAWCWCPNAMLFFRVM 408
            MIVLTPLPIAPQLSCDRQFAFRSNQDADDAFLERPWSFGYEDKWDAFMRRASHEFAAKVPYMVVPGNHEAECHSPACLSSPRRLNVSCMPVTLRAPAHTCTLACRRTCCSCDRVVYGFRSSAWCWCPNAMLFFRVM
Sbjct:    1 MIVLTPLPIAPQLSCDRQFAFRSNQDADDAFLERPWSFGYEDKWDAFMRRASHEFAAKVPYMVVPGNHEAECHSPACLSSPRRLNVSCMPVTLRAPAHTCTLACRRTCCSCDRVVYGFRSSAWCWCPNAMLFFRVM 136
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BLAST of Ec-00_003180.1 vs. uniprot
Match: D8LSG1_ECTSI (Purple acid phosphatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSG1_ECTSI)

HSP 1 Score: 131 bits (329), Expect = 9.390e-33
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 1 
Query:   79 ADDAFLERPWSFGYEDKWDAFMRRASHEFAAKVPYMVVPGNHEAECHSPACLSSPRRLN 255
            ADDAFLERPWSFGYEDKWDAFMRRASHEFAAKVPYMVVPGNHEAECHSPACLSSPRRLN
Sbjct:  464 ADDAFLERPWSFGYEDKWDAFMRRASHEFAAKVPYMVVPGNHEAECHSPACLSSPRRLN 522
[Close]
BLAST of Ec-00_003180.1 vs. uniprot
Match: A0A6H5KTZ0_9PHAE (Purple acid phosphatase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTZ0_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 9.570e-33
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 1 
Query:   79 ADDAFLERPWSFGYEDKWDAFMRRASHEFAAKVPYMVVPGNHEAECHSPACLSSPRRLN 255
            ADDAFLERPWSFGYEDKWDAFMRRASHEFAAKVPYMVVPGNHEAECHSPACLSSPRRLN
Sbjct:  502 ADDAFLERPWSFGYEDKWDAFMRRASHEFAAKVPYMVVPGNHEAECHSPACLSSPRRLN 560
[Close]
BLAST of Ec-00_003180.1 vs. uniprot
Match: F0Y4S6_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y4S6_AURAN)

HSP 1 Score: 75.1 bits (183), Expect = 1.930e-13
Identity = 31/53 (58.49%), Postives = 40/53 (75.47%), Query Frame = 1 
Query:   79 ADDAFLERPWSFGYEDKWDAFMRRASHEFAAKVPYMVVPGNHEAECHSPACLS 237
            ADDA L  P ++ YE  WD +M +A   FA++ PYMV+PGNHEAECHSPAC++
Sbjct:   23 ADDALLHEPLTWAYEAAWDEYMDQACGAFASRAPYMVLPGNHEAECHSPACVA 75
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BLAST of Ec-00_003180.1 vs. uniprot
Match: A0A7S0H1H2_9EUKA (Purple acid phosphatase (Fragment) n=2 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0H1H2_9EUKA)

HSP 1 Score: 69.7 bits (169), Expect = 2.340e-11
Identity = 34/54 (62.96%), Postives = 42/54 (77.78%), Query Frame = 1 
Query:   79 ADDAFLERPWSFGYEDKWDAFMRRASHEFAAKVPYMVVPGNHEAECHSPACLSS 240
            ADDAFL  P SF YE+ +D++M+  S+   +K PYMV+PGNHEAECHSPACL S
Sbjct:  108 ADDAFLHDPLSFQYENVYDSYMQWISNITESK-PYMVLPGNHEAECHSPACLVS 160
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BLAST of Ec-00_003180.1 vs. uniprot
Match: A0A7S0K0I5_CAFRO (Purple acid phosphatase n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0K0I5_CAFRO)

HSP 1 Score: 62.8 bits (151), Expect = 7.760e-9
Identity = 30/57 (52.63%), Postives = 32/57 (56.14%), Query Frame = 1 
Query:   79 ADDAFLERPWSFGYEDKWDAFMRRASHEFAAKVPYMVVPGNHEAECHSPACLSSPRR 249
            ADDAFL  P  FGYE  WD       +      P+M  PGNHEAECHSPACL    R
Sbjct:  116 ADDAFLHDPLGFGYELTWDVCQTWLEN-VTTSTPFMTAPGNHEAECHSPACLLDEHR 171
[Close]
BLAST of Ec-00_003180.1 vs. uniprot
Match: A0A5A8E7U5_CAFRO (Purple acid phosphatase n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E7U5_CAFRO)

HSP 1 Score: 62.8 bits (151), Expect = 8.070e-9
Identity = 30/57 (52.63%), Postives = 32/57 (56.14%), Query Frame = 1 
Query:   79 ADDAFLERPWSFGYEDKWDAFMRRASHEFAAKVPYMVVPGNHEAECHSPACLSSPRR 249
            ADDAFL  P  FGYE  WD       +      P+M  PGNHEAECHSPACL    R
Sbjct:  165 ADDAFLHDPLGFGYELTWDVCQTWLEN-VTTSTPFMTAPGNHEAECHSPACLLDEHR 220
[Close]
BLAST of Ec-00_003180.1 vs. uniprot
Match: A0A7S3HKL3_9STRA (Purple acid phosphatase (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HKL3_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 7.110e-8
Identity = 29/59 (49.15%), Postives = 39/59 (66.10%), Query Frame = 1 
Query:   79 ADDAFLERPW--SFGYEDKWDAFMRRASHEFAAKVPYMVVPGNHEAECHSPACLSSPRR 249
            ADD+FL +     F YE+ +D +M      +A+K+PYMV PGNHEA+CH PACL+   R
Sbjct:  166 ADDSFLHKGCVTKFCYEETYDEYMVNIE-PWASKIPYMVTPGNHEADCHDPACLTDRTR 223
[Close]
BLAST of Ec-00_003180.1 vs. uniprot
Match: A0A329SKP7_9STRA (Purple acid phosphatase n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SKP7_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 7.320e-8
Identity = 31/61 (50.82%), Postives = 41/61 (67.21%), Query Frame = 1 
Query:   79 ADDAFLERPWSFG--YEDKWDAFMRRASHEFAAKVPYMVVPGNHEAECHSPACLSSPRRLN 255
            ADDAFL    +FG  YE  ++ FM   ++    ++ YMV+ GNHEAECHSPACL S ++LN
Sbjct:  243 ADDAFLSAKTAFGFFYEQVYNKFMNSMTN-IMRRMAYMVLVGNHEAECHSPACLLSDKKLN 302
[Close]
BLAST of Ec-00_003180.1 vs. uniprot
Match: A0A2P4YCN7_9STRA (Purple acid phosphatase n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YCN7_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 9.580e-8
Identity = 31/61 (50.82%), Postives = 41/61 (67.21%), Query Frame = 1 
Query:   79 ADDAFLERPWSFG--YEDKWDAFMRRASHEFAAKVPYMVVPGNHEAECHSPACLSSPRRLN 255
            ADDAFL    +FG  YE  ++ FM   ++    ++ YMV+ GNHEAECHSPACL S ++LN
Sbjct:  133 ADDAFLSAKTAFGFFYEQVYNKFMNSMTN-IMRRMAYMVLVGNHEAECHSPACLLSNKKLN 192
The following BLAST results are available for this feature:
BLAST of Ec-00_003180.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FP59_ECTSI2.110e-101100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LSG1_ECTSI9.390e-33100.00Purple acid phosphatase n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KTZ0_9PHAE9.570e-33100.00Purple acid phosphatase n=1 Tax=Ectocarpus sp. CCA... [more]
F0Y4S6_AURAN1.930e-1358.49Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S0H1H2_9EUKA2.340e-1162.96Purple acid phosphatase (Fragment) n=2 Tax=Amorpho... [more]
A0A7S0K0I5_CAFRO7.760e-952.63Purple acid phosphatase n=1 Tax=Cafeteria roenberg... [more]
A0A5A8E7U5_CAFRO8.070e-952.63Purple acid phosphatase n=2 Tax=Cafeteria roenberg... [more]
A0A7S3HKL3_9STRA7.110e-849.15Purple acid phosphatase (Fragment) n=1 Tax=Spumell... [more]
A0A329SKP7_9STRA7.320e-850.82Purple acid phosphatase n=1 Tax=Phytophthora cacto... [more]
A0A2P4YCN7_9STRA9.580e-850.82Purple acid phosphatase n=1 Tax=Phytophthora palmi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:3218311..3219536 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score132.1
Seed ortholog evalue2e-28
Seed eggNOG ortholog2880.D8LSG1
Length411
KEGG rclassRC00017
KEGG koko:K01078,ko:K22390
KEGG ReactionR00548,R02135
KEGG Pathwayko00730,ko00740,ko01100,map00730,map00740,map01100
Hectar predicted targeting categoryother localisation
Gene idEc-00_003180.1
EggNOG free text desc.acid phosphatase activity
EggNOG OGsCOG1409@1,KOG1378@2759
EC3.1.3.2
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_003180Ec-00_003180Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 3218311..3219536 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003180.1.2Ec-00_003180.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3218311..3218572 -
Ec-00_003180.1.1Ec-00_003180.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3219388..3219536 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003180.1CDS:Ec-00_003180.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 3218311..3218572 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003180.1Ec-00_003180.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 3218311..3219536 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_003180.1 ID=Ec-00_003180.1|Name=Ec-00_003180.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=137bp
MIVLTPLPIAPQLSCDRQFAFRSNQDADDAFLERPWSFGYEDKWDAFMRR
ASHEFAAKVPYMVVPGNHEAECHSPACLSSPRRLNVSCMPVTLRAPAHTC
TLACRRTCCSCDRVVYGFRSSAWCWCPNAMLFFRVM*
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spliced messenger RNA

>Ec-00_003180.1 ID=Ec-00_003180.1|Name=Ec-00_003180.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=411bp|location=Sequence derived from alignment at chr_00:3218311..3219536- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGATAGTACTTACTCCTCTTCCCATCGCGCCCCAACTCTCGTGTGACCG
ACAATTTGCGTTCCGTTCCAACCAAGACGCTGACGATGCCTTTTTGGAGC
GGCCTTGGTCGTTCGGCTACGAAGACAAGTGGGATGCTTTCATGAGAAGG
GCTTCCCACGAGTTTGCCGCTAAGGTCCCGTACATGGTCGTGCCCGGAAA
CCACGAGGCTGAGTGCCACAGCCCCGCGTGCCTCTCCTCTCCGCGGAGAC
TCAACGTGAGTTGTATGCCCGTCACCTTGCGCGCGCCTGCACACACGTGC
ACGCTCGCCTGCCGAAGAACATGTTGTTCGTGCGACCGTGTGGTGTACGG
TTTTCGATCATCAGCTTGGTGTTGGTGTCCGAATGCCATGCTTTTTTTTC
GGGTAATGTAG
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protein sequence of Ec-00_003180.1

>Ec-00_003180.1 ID=Ec-00_003180.1|Name=Ec-00_003180.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=137bp
MIVLTPLPIAPQLSCDRQFAFRSNQDADDAFLERPWSFGYEDKWDAFMRR
ASHEFAAKVPYMVVPGNHEAECHSPACLSSPRRLNVSCMPVTLRAPAHTC
TLACRRTCCSCDRVVYGFRSSAWCWCPNAMLFFRVM*
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mRNA from alignment at chr_00:3218311..3219536-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_003180.1 ID=Ec-00_003180.1|Name=Ec-00_003180.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1226bp|location=Sequence derived from alignment at chr_00:3218311..3219536- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGATAGTACTTACTCCTCTTCCCATCGCGCCCCAACTCTCGTGTGACCG
ACAATTTGCGTTCCGTTCCAACCAAGACGCTGACGATGCCTTTTTGGAGC
GGCCTTGGTCGTTCGGCTACGAAGACAAGTGGGATGCTTTCATGAGAAGG
TATGTACGACCCGAGGGAGTTGATAAAACTTATCTGCTTGTTTGGCGGAA
ACGAGTACGTGTGGCTTTTTTTGTCAAGAAGTTGGTGCGAGGATGCAATT
GTACGGTGGGACGAGGTCGGCAAGCCTTCGTCTGGCGGCGGTCAAGCAGG
AGGGCGGGAGTTGAGAATCTGATCTGCTTGTTTGGTGGAAATGAGTACGT
GTGGCTTTTGTCAAGAGAGGGTTGGCGCGTGGATACAATCATGCGGTGGG
AAGAGGTCGACAAGCTTCCGTCTGGTGGTGGTCACGCTGAAGGACGGGGA
GATAGGACGGGGTTGGGGGCAGAGGCGGAGGAACAATGACGGTAGATTGA
CGGCAGTCACTCCAGAGGGGAGGAAGTACAAGGTTGAGCTTTGCTTGCTT
CTGTCTCTGGTTCAGGCGTCGTGATCGTATCGTTTTCGGTCGCTGTGGTA
CGCACAGTCGGCTGGATTTAGCAACAGGGGCGGAGGTAGCGTGCCAGGTG
ATCCGTCTGAAATCGCCGGGACGGTATCTACTGTTTCTGTTGTCGTTTTC
GGTGTCCTGCCGTCGTCGCCAGCCATTGCCGTTTCGTGGCAGTTGCAGTT
GGCATCACTGCATCGCCTGCACACTAGGAAAGAAAGAAGAAAAAACAAAT
GCCTCAAGGTACAGCAGTACTAAATACCTTTTCGTGCTGCATCTTGCCCG
CAACCACCATATTTGTACTTTTGGCGGCACTGCATGCAGCCTTGTGACTT
GACCATTACCCCACCTGCTACAAACTTCCGTGTTTTTTTTTTGTCCCGCC
GCTTGCTGGCACAGGGCTTCCCACGAGTTTGCCGCTAAGGTCCCGTACAT
GGTCGTGCCCGGAAACCACGAGGCTGAGTGCCACAGCCCCGCGTGCCTCT
CCTCTCCGCGGAGACTCAACGTGAGTTGTATGCCCGTCACCTTGCGCGCG
CCTGCACACACGTGCACGCTCGCCTGCCGAAGAACATGTTGTTCGTGCGA
CCGTGTGGTGTACGGTTTTCGATCATCAGCTTGGTGTTGGTGTCCGAATG
CCATGCTTTTTTTTCGGGTAATGTAG
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Coding sequence (CDS) from alignment at chr_00:3218311..3219536-

>Ec-00_003180.1 ID=Ec-00_003180.1|Name=Ec-00_003180.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=411bp|location=Sequence derived from alignment at chr_00:3218311..3219536- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGATAGTACTTACTCCTCTTCCCATCGCGCCCCAACTCTCGTGTGACCG
ACAATTTGCGTTCCGTTCCAACCAAGACGCTGACGATGCCTTTTTGGAGC
GGCCTTGGTCGTTCGGCTACGAAGACAAGTGGGATGCTTTCATGAGAAGG
GCTTCCCACGAGTTTGCCGCTAAGGTCCCGTACATGGTCGTGCCCGGAAA
CCACGAGGCTGAGTGCCACAGCCCCGCGTGCCTCTCCTCTCCGCGGAGAC
TCAACGTGAGTTGTATGCCCGTCACCTTGCGCGCGCCTGCACACACGTGC
ACGCTCGCCTGCCGAAGAACATGTTGTTCGTGCGACCGTGTGGTGTACGG
TTTTCGATCATCAGCTTGGTGTTGGTGTCCGAATGCCATGCTTTTTTTTC
GGGTAATGTAG
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Synonyms
The feature 'Ec-00_003180.1' has the following synonyms
Synonym
Esi1865_0001
Esi_1865_0001