Ec-00_003170.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_003170.1
Unique NameEc-00_003170.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length129
Homology
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BLAST of Ec-00_003170.1 vs. uniprot
Match: D7FP58_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP58_ECTSI)

HSP 1 Score: 249 bits (637), Expect = 8.170e-84
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 1 
Query:    1 MYHEGGIILLLQIICMVSTVIIYGWIRDLFKRGRDSDAQVGESARTTEEFKMDLEASSADGCVAYEVKRGRVPTAQLLAQEAELAQKSGAEKVKVITSGPTSMVDGVLASAREVDWKLFDTEVFSFEF 384
            MYHEGGIILLLQIICMVSTVIIYGWIRDLFKRGRDSDAQVGESARTTEEFKMDLEASSADGCVAYEVKRGRVPTAQLLAQEAELAQKSGAEKVKVITSGPTSMVDGVLASAREVDWKLFDTEVFSFEF
Sbjct:    1 MYHEGGIILLLQIICMVSTVIIYGWIRDLFKRGRDSDAQVGESARTTEEFKMDLEASSADGCVAYEVKRGRVPTAQLLAQEAELAQKSGAEKVKVITSGPTSMVDGVLASAREVDWKLFDTEVFSFEF 128
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BLAST of Ec-00_003170.1 vs. uniprot
Match: D7G8Y6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8Y6_ECTSI)

HSP 1 Score: 134 bits (336), Expect = 5.180e-34
Identity = 72/137 (52.55%), Postives = 95/137 (69.34%), Query Frame = 1 
Query:    4 YHEGGIILLLQIICMVSTVIIYGWIRDLFKR---GRDSDAQV-----GESARTTEEFKMDLEASSADGC--VAYEVKRGRVPTAQLLAQEAELAQKSGAEKVKVITSGPTSMVDGVLASAREVDWKLFDTEVFSFEF 384
            +HEG II +L +IC++S++I+Y W+  L ++   G+  D+       G SAR  EE KMDLE+S+  G   V Y+V  GRVPT  LL +EAELA+KS    V+V+TSGP S+VDGVLA +R +DWKLFDTE FSFEF
Sbjct:  497 FHEGAIIFVLMVICIISSLIVYDWLFFLVRKHLLGKRVDSAEASQAGGRSARVGEESKMDLESSTVAGVGSVTYDVNPGRVPTQALLIREAELAKKSNTSSVRVLTSGPNSLVDGVLAESRAIDWKLFDTEAFSFEF 633
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BLAST of Ec-00_003170.1 vs. uniprot
Match: D7G5Y8_ECTSI (Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2879 RepID=D7G5Y8_ECTSI)

HSP 1 Score: 134 bits (337), Expect = 5.800e-34
Identity = 70/137 (51.09%), Postives = 93/137 (67.88%), Query Frame = 1 
Query:    4 YHEGGIILLLQIICMVSTVIIYGWIRDLFKR--------GRDSDAQVGESARTTEEFKMDLEASSADGC--VAYEVKRGRVPTAQLLAQEAELAQKSGAEKVKVITSGPTSMVDGVLASAREVDWKLFDTEVFSFEF 384
            +HEG II +L +IC++S++I+Y W+  L ++          ++    G SAR  EE KMDLE+S+  G   V Y+V  GRVPT  LL +EAELA+KS    V+V+TSGP S+VDGVLA +R +DWKLFDTE FSFEF
Sbjct:  678 FHEGAIIFVLMVICIISSLIVYDWLFFLVRKHLLGKRVDSAEASQASGRSARVGEESKMDLESSTVAGVGSVTYDVNPGRVPTQALLIREAELAKKSNTSSVRVLTSGPNSLVDGVLAESRAIDWKLFDTEAFSFEF 814
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BLAST of Ec-00_003170.1 vs. uniprot
Match: D7FGP2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGP2_ECTSI)

HSP 1 Score: 133 bits (335), Expect = 7.900e-34
Identity = 70/137 (51.09%), Postives = 92/137 (67.15%), Query Frame = 1 
Query:    4 YHEGGIILLLQIICMVSTVIIYGWIRDLFKR--------GRDSDAQVGESARTTEEFKMDLEASSADGC--VAYEVKRGRVPTAQLLAQEAELAQKSGAEKVKVITSGPTSMVDGVLASAREVDWKLFDTEVFSFEF 384
            +HEG II +L +IC++S++I+Y W+  L ++          ++    G SAR  EE KMDLE+S+  G   V Y V  GRVPT  LL +EAELA+KS    V+V+TSGP S+VDGVLA +R +DWKLFDTE FSFEF
Sbjct:  520 FHEGAIIFVLMVICIISSLIVYDWLFFLVRKHLLGKRVDSAEASQASGRSARVGEESKMDLESSTVAGVGSVTYNVNPGRVPTQALLIREAELAKKSNTSSVRVLTSGPNSLVDGVLAESRAIDWKLFDTEAFSFEF 656
[Close]
BLAST of Ec-00_003170.1 vs. uniprot
Match: D8LNK5_ECTSI (Ferric reductase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNK5_ECTSI)

HSP 1 Score: 111 bits (278), Expect = 5.220e-26
Identity = 64/137 (46.72%), Postives = 82/137 (59.85%), Query Frame = 1 
Query:    4 YHEGGIILLLQIICMVSTVIIYGWIRDL----------FKRGRDSDAQVGESARTTEEFKMDLEASSADGCVAYEVKRGRVPTAQLLAQEAELAQKSGAEKVKVITSGPTSMVDGVLASAREVDWKLFDTEVFSFEF 384
            YH GG  L+L I+C+VS +I+Y W+             F   +   +   ++A    E K D   SSA    AY+V R RVPT  LL QEAELA+K G   VKV+TSGP ++VDGVLA AR VDW+LFDTE  S++F
Sbjct:  595 YHSGGTRLVLMIVCIVSALIVYDWLAYFVLTFPCKDSGFSSAQTHPSYASKAAVIHNEPKQDALESSAT--TAYDVLRQRVPTRALLVQEAELAKKKGHRSVKVLTSGPQALVDGVLADARAVDWQLFDTEELSYQF 729
The following BLAST results are available for this feature:
BLAST of Ec-00_003170.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FP58_ECTSI8.170e-84100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G8Y6_ECTSI5.180e-3452.55Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
D7G5Y8_ECTSI5.800e-3451.09Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2... [more]
D7FGP2_ECTSI7.900e-3451.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LNK5_ECTSI5.220e-2646.72Ferric reductase n=1 Tax=Ectocarpus siliculosus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:3205849..3206907 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score134.4
Seed ortholog evalue3.7e-29
Seed eggNOG ortholog2880.D7G5Y8
Preferred nameAIM14
Length387
KEGG koko:K00521
Hectar predicted targeting categorysignal anchor
Gene idEc-00_003170.1
GOsGO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005783,GO:0006873,GO:0006875,GO:0006915,GO:0008150,GO:0008152,GO:0008219,GO:0009987,GO:0012501,GO:0012505,GO:0016020,GO:0016021,GO:0016175,GO:0016491,GO:0016651,GO:0016722,GO:0019725,GO:0030003,GO:0031090,GO:0031224,GO:0032956,GO:0032970,GO:0033043,GO:0042592,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0048471,GO:0048878,GO:0050664,GO:0050789,GO:0050794,GO:0050801,GO:0051128,GO:0051493,GO:0055065,GO:0055080,GO:0055082,GO:0055114,GO:0065007,GO:0065008,GO:0097038,GO:0098588,GO:0098771,GO:0098805,GO:0098852
EggNOG free text desc.oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor
EggNOG OGsKOG0039@1,KOG0039@2759
EC1.16.1.7
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_003170Ec-00_003170Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 3205849..3206907 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003170.1.2Ec-00_003170.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3205849..3206118 -
Ec-00_003170.1.1Ec-00_003170.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3206791..3206907 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003170.1CDS:Ec-00_003170.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 3205849..3206118 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003170.1Ec-00_003170.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 3205849..3206907 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_003170.1 ID=Ec-00_003170.1|Name=Ec-00_003170.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=129bp
MYHEGGIILLLQIICMVSTVIIYGWIRDLFKRGRDSDAQVGESARTTEEF
KMDLEASSADGCVAYEVKRGRVPTAQLLAQEAELAQKSGAEKVKVITSGP
TSMVDGVLASAREVDWKLFDTEVFSFEF*
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spliced messenger RNA

>Ec-00_003170.1 ID=Ec-00_003170.1|Name=Ec-00_003170.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=387bp|location=Sequence derived from alignment at chr_00:3205849..3206907- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGTACCACGAGGGCGGAATCATCCTGCTGCTCCAGATCATCTGCATGGT
CAGCACCGTCATCATCTACGGCTGGATCCGCGACTTGTTCAAGCGCGGCA
GGGACTCCGACGCACAGGTGGGAGAGTCAGCACGGACAACGGAGGAGTTC
AAGATGGACCTCGAGGCATCATCCGCCGACGGGTGCGTCGCGTACGAAGT
CAAGCGCGGCCGAGTGCCCACCGCCCAGCTGCTGGCCCAGGAGGCCGAGC
TCGCCCAGAAGTCGGGCGCCGAGAAGGTCAAGGTCATCACGAGCGGCCCC
ACCTCGATGGTAGACGGCGTGCTCGCCAGCGCGCGCGAGGTCGACTGGAA
GCTCTTCGACACCGAAGTGTTCTCGTTCGAGTTTTAG
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protein sequence of Ec-00_003170.1

>Ec-00_003170.1 ID=Ec-00_003170.1|Name=Ec-00_003170.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=129bp
MYHEGGIILLLQIICMVSTVIIYGWIRDLFKRGRDSDAQVGESARTTEEF
KMDLEASSADGCVAYEVKRGRVPTAQLLAQEAELAQKSGAEKVKVITSGP
TSMVDGVLASAREVDWKLFDTEVFSFEF*
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mRNA from alignment at chr_00:3205849..3206907-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_003170.1 ID=Ec-00_003170.1|Name=Ec-00_003170.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1059bp|location=Sequence derived from alignment at chr_00:3205849..3206907- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTACCACGAGGGCGGAATCATCCTGCTGCTCCAGATCATCTGCATGGT
CAGCACCGTCATCATCTACGGCTGGATCCGCGACTTGTTCAAGCGCGGCA
GGGACTCCGACGCACAGGTGTGGATGAACACTGCCCCCCCCCCCCCCGGC
TCCCCCTTTCCCCCGAAGATTAAGACCACACACGCGAACGCACGCTATGG
TCTTGTAGGCGAAAGACAGTCATCCCGCATCCATCCGTGTGACGGGTCAG
GGACACCGACGAACCGAAAGATGGTCATGGCATCGGCGCCCGGCTGCGAA
ACAGAACTCACACTTTTCGACCTTTGCGGGACAGATTCCCGAGCGGTTAT
TATGTTATTATCCATCCTCACTCGATGCACACATAGATAGACTGACGATT
GAAGGGAGGCCGTATCGCAGCATGTCGTTCACGGCAATGATCGTGCGAAT
CAGGGATATATATATAAATAACTCTTGTCCCTCCTCCTTTTGTGTTTTGT
TCTGTCTCCCACCCAATATACACCCAATTTTTTTGTTATATTGTGGGATA
TGCAACCCTTGTTCCCTCCTTCCGTTTTCGTTCTGTCTCCCACCCAATAT
ACACGCATTTTTTTTTTCATTGTGGGATATGTTACCCTTGTTACCTCCTT
CCGTTTTTGTTCTTTCTTCCATCCAATACATCAGATCAATCAAACCACCC
CGTCTTGACTTTTGTCCGCCCCCTCCCCCCATTCTGTTCCGTCTCCCGCC
CAACAACCCCCTCCCCCTTCCACCACATACACAAAAAAGGTGGGAGAGTC
AGCACGGACAACGGAGGAGTTCAAGATGGACCTCGAGGCATCATCCGCCG
ACGGGTGCGTCGCGTACGAAGTCAAGCGCGGCCGAGTGCCCACCGCCCAG
CTGCTGGCCCAGGAGGCCGAGCTCGCCCAGAAGTCGGGCGCCGAGAAGGT
CAAGGTCATCACGAGCGGCCCCACCTCGATGGTAGACGGCGTGCTCGCCA
GCGCGCGCGAGGTCGACTGGAAGCTCTTCGACACCGAAGTGTTCTCGTTC
GAGTTTTAG
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Coding sequence (CDS) from alignment at chr_00:3205849..3206907-

>Ec-00_003170.1 ID=Ec-00_003170.1|Name=Ec-00_003170.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=387bp|location=Sequence derived from alignment at chr_00:3205849..3206907- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTACCACGAGGGCGGAATCATCCTGCTGCTCCAGATCATCTGCATGGT
CAGCACCGTCATCATCTACGGCTGGATCCGCGACTTGTTCAAGCGCGGCA
GGGACTCCGACGCACAGGTGGGAGAGTCAGCACGGACAACGGAGGAGTTC
AAGATGGACCTCGAGGCATCATCCGCCGACGGGTGCGTCGCGTACGAAGT
CAAGCGCGGCCGAGTGCCCACCGCCCAGCTGCTGGCCCAGGAGGCCGAGC
TCGCCCAGAAGTCGGGCGCCGAGAAGGTCAAGGTCATCACGAGCGGCCCC
ACCTCGATGGTAGACGGCGTGCTCGCCAGCGCGCGCGAGGTCGACTGGAA
GCTCTTCGACACCGAAGTGTTCTCGTTCGAGTTTTAG
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Synonyms
The feature 'Ec-00_003170.1' has the following synonyms
Synonym
Esi1853_0001
Esi_1853_0001