Ec-00_003160.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_003160.1
Unique NameEc-00_003160.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length99
Homology
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BLAST of Ec-00_003160.1 vs. uniprot
Match: D7FP28_ECTSI (DNA-directed RNA polymerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP28_ECTSI)

HSP 1 Score: 213 bits (541), Expect = 3.930e-70
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 1 
Query:    1 MCPLVTPFQCRLRDCTYSAPLWVNVRYTRGRQIVNKTNINIGRIPVMLLSCKCVLTGKSEAELADMKECPYDPGGYFVVKGVEKVGKVKVCPLDSQPF 294
            MCPLVTPFQCRLRDCTYSAPLWVNVRYTRGRQIVNKTNINIGRIPVMLLSCKCVLTGKSEAELADMKECPYDPGGYFVVKGVEKVGKVKVCPLDSQPF
Sbjct:    1 MCPLVTPFQCRLRDCTYSAPLWVNVRYTRGRQIVNKTNINIGRIPVMLLSCKCVLTGKSEAELADMKECPYDPGGYFVVKGVEKVGKVKVCPLDSQPF 98
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BLAST of Ec-00_003160.1 vs. uniprot
Match: A0A6H5JAF8_9PHAE (DNA-directed RNA polymerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAF8_9PHAE)

HSP 1 Score: 173 bits (439), Expect = 1.500e-48
Identity = 80/81 (98.77%), Postives = 81/81 (100.00%), Query Frame = 1 
Query:   13 VTPFQCRLRDCTYSAPLWVNVRYTRGRQIVNKTNINIGRIPVMLLSCKCVLTGKSEAELADMKECPYDPGGYFVVKGVEKV 255
            +TPFQCRLRDCTYSAPLWVNVRYTRGRQIVNKTNINIGRIPVMLLSCKCVLTGKSEAELADMKECPYDPGGYFVVKGVEKV
Sbjct:  153 ITPFQCRLRDCTYSAPLWVNVRYTRGRQIVNKTNINIGRIPVMLLSCKCVLTGKSEAELADMKECPYDPGGYFVVKGVEKV 233
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BLAST of Ec-00_003160.1 vs. uniprot
Match: A0A7S3DT07_9STRA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DT07_9STRA)

HSP 1 Score: 140 bits (352), Expect = 1.540e-38
Identity = 63/81 (77.78%), Postives = 73/81 (90.12%), Query Frame = 1 
Query:   13 VTPFQCRLRDCTYSAPLWVNVRYTRGRQIVNKTNINIGRIPVMLLSCKCVLTGKSEAELADMKECPYDPGGYFVVKGVEKV 255
            +TPFQCRLRDC+YSAP++VNVRYTRGRQIV K N+ IGR+P+ML S  CVLTGK+E ELA +KECPYDPGGYFV+KGVEKV
Sbjct:   52 ITPFQCRLRDCSYSAPIYVNVRYTRGRQIVVKRNVMIGRMPIMLRSQNCVLTGKTEDELAALKECPYDPGGYFVIKGVEKV 132
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BLAST of Ec-00_003160.1 vs. uniprot
Match: I2CNY0_NANGC (DNA-directed RNA polymerase subunit beta n=3 Tax=Monodopsidaceae TaxID=425072 RepID=I2CNY0_NANGC)

HSP 1 Score: 143 bits (360), Expect = 1.470e-37
Identity = 64/81 (79.01%), Postives = 73/81 (90.12%), Query Frame = 1 
Query:   13 VTPFQCRLRDCTYSAPLWVNVRYTRGRQIVNKTNINIGRIPVMLLSCKCVLTGKSEAELADMKECPYDPGGYFVVKGVEKV 255
            VTPFQCRLRDCTYSAP+ V+VRYTRGRQIV K  + IGRIP+ML SCKC+L G+SEAELA+ KECPYDPGGYF+VKGVE+V
Sbjct:  121 VTPFQCRLRDCTYSAPITVDVRYTRGRQIVVKRGVMIGRIPIMLRSCKCILAGRSEAELAEKKECPYDPGGYFIVKGVERV 201
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BLAST of Ec-00_003160.1 vs. uniprot
Match: A0A482SHA3_9ARCH (DNA-directed RNA polymerase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SHA3_9ARCH)

HSP 1 Score: 131 bits (329), Expect = 2.510e-37
Identity = 62/81 (76.54%), Postives = 67/81 (82.72%), Query Frame = 1 
Query:   13 VTPFQCRLRDCTYSAPLWVNVRYTRGRQIVNKTNINIGRIPVMLLSCKCVLTGKSEAELADMKECPYDPGGYFVVKGVEKV 255
            VTPFQCRLRDCTYSAPL+VNV+YTR +QIV K NI IGRIP+ML S KCVL  KS  EL  +KEC YDPGGYFVVKG EKV
Sbjct:   23 VTPFQCRLRDCTYSAPLYVNVKYTRQKQIVVKNNIQIGRIPIMLRSEKCVLNNKSSEELGALKECEYDPGGYFVVKGTEKV 103
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BLAST of Ec-00_003160.1 vs. uniprot
Match: A0A7S2XTK8_9STRA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XTK8_9STRA)

HSP 1 Score: 134 bits (338), Expect = 5.020e-37
Identity = 60/80 (75.00%), Postives = 71/80 (88.75%), Query Frame = 1 
Query:   16 TPFQCRLRDCTYSAPLWVNVRYTRGRQIVNKTNINIGRIPVMLLSCKCVLTGKSEAELADMKECPYDPGGYFVVKGVEKV 255
            TPFQCRLRDCTYSAP++VNVRYTRGRQIV K  + +GR+P+ML S KC+L+ K+E +LA MKECPYDPGGYFV+KGVEKV
Sbjct:  140 TPFQCRLRDCTYSAPIYVNVRYTRGRQIVIKKKVLVGRMPIMLRSSKCLLSHKTERQLAAMKECPYDPGGYFVIKGVEKV 219
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BLAST of Ec-00_003160.1 vs. uniprot
Match: A0A7S2EFY4_TRICV (DNA-directed RNA polymerase (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EFY4_TRICV)

HSP 1 Score: 130 bits (328), Expect = 1.120e-36
Identity = 56/80 (70.00%), Postives = 72/80 (90.00%), Query Frame = 1 
Query:   16 TPFQCRLRDCTYSAPLWVNVRYTRGRQIVNKTNINIGRIPVMLLSCKCVLTGKSEAELADMKECPYDPGGYFVVKGVEKV 255
            +PFQCRLRDCTYSAP++V+VRYTRGRQIV K  + +GR+P+ML S KC+L+GK+E +LA M+ECP+DPGGYF++KGVEKV
Sbjct:   51 SPFQCRLRDCTYSAPIYVDVRYTRGRQIVVKKKVVVGRMPIMLRSSKCMLSGKTERQLARMRECPHDPGGYFIIKGVEKV 130
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BLAST of Ec-00_003160.1 vs. uniprot
Match: A0A1E7EUM7_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EUM7_9STRA)

HSP 1 Score: 139 bits (349), Expect = 4.480e-36
Identity = 63/80 (78.75%), Postives = 71/80 (88.75%), Query Frame = 1 
Query:   16 TPFQCRLRDCTYSAPLWVNVRYTRGRQIVNKTNINIGRIPVMLLSCKCVLTGKSEAELADMKECPYDPGGYFVVKGVEKV 255
            TPFQCRLRDCTYSAP++VNVRYTRGRQIV K  + IG++P+ML S KC+L GKSE +LA MKECPYDPGGYFVVKGVEKV
Sbjct:  162 TPFQCRLRDCTYSAPIYVNVRYTRGRQIVVKRKVKIGQMPIMLRSQKCILNGKSEQDLARMKECPYDPGGYFVVKGVEKV 241
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BLAST of Ec-00_003160.1 vs. uniprot
Match: B8BQM2_THAPS (DNA-directed RNA polymerase subunit beta n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BQM2_THAPS)

HSP 1 Score: 138 bits (347), Expect = 8.300e-36
Identity = 63/80 (78.75%), Postives = 70/80 (87.50%), Query Frame = 1 
Query:   16 TPFQCRLRDCTYSAPLWVNVRYTRGRQIVNKTNINIGRIPVMLLSCKCVLTGKSEAELADMKECPYDPGGYFVVKGVEKV 255
            TPFQCRLRDCTYSAP++VNVRYTRGRQIV K  + IGR+P+ML S KC+L  KSE ELA MKECPYDPGGYFV+KGVEKV
Sbjct:   61 TPFQCRLRDCTYSAPIYVNVRYTRGRQIVVKKKVMIGRMPIMLRSSKCLLRDKSERELAQMKECPYDPGGYFVIKGVEKV 140
[Close]
BLAST of Ec-00_003160.1 vs. uniprot
Match: A0A7S4QYU8_9STRA (DNA-directed RNA polymerase subunit beta n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QYU8_9STRA)

HSP 1 Score: 135 bits (340), Expect = 7.350e-35
Identity = 62/80 (77.50%), Postives = 71/80 (88.75%), Query Frame = 1 
Query:   16 TPFQCRLRDCTYSAPLWVNVRYTRGRQIVNKTNINIGRIPVMLLSCKCVLTGKSEAELADMKECPYDPGGYFVVKGVEKV 255
            TPFQCRLRDCTYSAP++V+VRYTRGRQIV K  I IGR+P+ML S KC+LTGK+  +LA MKECP+DPGGYFVVKGVEKV
Sbjct:  295 TPFQCRLRDCTYSAPIYVDVRYTRGRQIVVKRKIMIGRLPIMLRSSKCLLTGKTHRQLARMKECPHDPGGYFVVKGVEKV 374
The following BLAST results are available for this feature:
BLAST of Ec-00_003160.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FP28_ECTSI3.930e-70100.00DNA-directed RNA polymerase n=1 Tax=Ectocarpus sil... [more]
A0A6H5JAF8_9PHAE1.500e-4898.77DNA-directed RNA polymerase n=1 Tax=Ectocarpus sp.... [more]
A0A7S3DT07_9STRA1.540e-3877.78DNA-directed RNA polymerase (Fragment) n=1 Tax=Amp... [more]
I2CNY0_NANGC1.470e-3779.01DNA-directed RNA polymerase subunit beta n=3 Tax=M... [more]
A0A482SHA3_9ARCH2.510e-3776.54DNA-directed RNA polymerase n=1 Tax=archaeon TaxID... [more]
A0A7S2XTK8_9STRA5.020e-3775.00DNA-directed RNA polymerase (Fragment) n=1 Tax=Att... [more]
A0A7S2EFY4_TRICV1.120e-3670.00DNA-directed RNA polymerase (Fragment) n=1 Tax=Tri... [more]
A0A1E7EUM7_9STRA4.480e-3678.75DNA-directed RNA polymerase subunit beta n=1 Tax=F... [more]
B8BQM2_THAPS8.300e-3678.75DNA-directed RNA polymerase subunit beta n=1 Tax=T... [more]
A0A7S4QYU8_9STRA7.350e-3577.50DNA-directed RNA polymerase subunit beta n=2 Tax=D... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:3200250..3201086 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score214.2
Seed ortholog evalue2.8e-53
Seed eggNOG ortholog2880.D7FP28
Preferred namePOLR3B
Length297
KEGG rclassRC02795
KEGG koko:K03010,ko:K03021
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,ko04623,ko05016,ko05169,map00230,map00240,map01100,map03020,map04623,map05016,map05169
KEGG ModuleM00180,M00181
Hectar predicted targeting categoryother localisation
Gene idEc-00_003160.1
GOsGO:0000428,GO:0001817,GO:0001819,GO:0002682,GO:0002684,GO:0003674,GO:0003824,GO:0003899,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005666,GO:0005730,GO:0005736,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006360,GO:0006383,GO:0006399,GO:0006725,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009304,GO:0009553,GO:0009561,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0030880,GO:0031347,GO:0031349,GO:0031974,GO:0031981,GO:0032479,GO:0032481,GO:0032501,GO:0032502,GO:0032648,GO:0032728,GO:0032774,GO:0032991,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0042797,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044452,GO:0044464,GO:0045088,GO:0045089,GO:0046483,GO:0048229,GO:0048518,GO:0048583,GO:0048584,GO:0048856,GO:0050776,GO:0050778,GO:0050789,GO:0051239,GO:0051240,GO:0055029,GO:0061695,GO:0065007,GO:0070013,GO:0071704,GO:0080134,GO:0090304,GO:0097659,GO:0097747,GO:0098781,GO:0140098,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234
EggNOG free text desc.DNA-directed 5'-3' RNA polymerase activity
EggNOG OGsCOG0085@1,KOG0215@2759
EC2.7.7.6
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_003160Ec-00_003160Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 3200250..3201086 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003160.1.1Ec-00_003160.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3200250..3200398 +
Ec-00_003160.1.2Ec-00_003160.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3200939..3201086 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003160.1CDS:Ec-00_003160.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 3200250..3200398 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003160.1Ec-00_003160.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 3200250..3201086 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_003160.1 ID=Ec-00_003160.1|Name=Ec-00_003160.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=99bp
MCPLVTPFQCRLRDCTYSAPLWVNVRYTRGRQIVNKTNINIGRIPVMLLS
CKCVLTGKSEAELADMKECPYDPGGYFVVKGVEKVGKVKVCPLDSQPF*
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spliced messenger RNA

>Ec-00_003160.1 ID=Ec-00_003160.1|Name=Ec-00_003160.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=297bp|location=Sequence derived from alignment at chr_00:3200250..3201086+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCCCCCTAGTCACGCCGTTCCAATGTCGACTACGCGACTGCACGTA
CTCCGCTCCCCTGTGGGTGAACGTCCGGTACACGCGAGGTCGCCAAATCG
TCAACAAGACCAACATCAACATCGGCCGCATCCCAGTCATGCTGCTCAGC
TGCAAGTGCGTCCTGACGGGCAAGAGCGAGGCGGAGCTGGCGGATATGAA
GGAGTGCCCATACGATCCCGGAGGGTACTTCGTCGTCAAGGGAGTGGAAA
AGGTGGGCAAGGTTAAGGTCTGTCCGCTTGATTCACAACCTTTTTGA
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protein sequence of Ec-00_003160.1

>Ec-00_003160.1 ID=Ec-00_003160.1|Name=Ec-00_003160.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=99bp
MCPLVTPFQCRLRDCTYSAPLWVNVRYTRGRQIVNKTNINIGRIPVMLLS
CKCVLTGKSEAELADMKECPYDPGGYFVVKGVEKVGKVKVCPLDSQPF*
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mRNA from alignment at chr_00:3200250..3201086+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_003160.1 ID=Ec-00_003160.1|Name=Ec-00_003160.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=837bp|location=Sequence derived from alignment at chr_00:3200250..3201086+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTGCCCCCTAGTCACGCCGTTCCAATGTCGACTACGCGACTGCACGTA
CTCCGCTCCCCTGTGGGTGAACGTCCGGTACACGCGAGGTCGCCAAATCG
TCAACAAGACCAACATCAACATCGGCCGCATCCCAGTCATGCTGCTCAGG
TTCGCACCTCATGTGCTCTCGCGCTATGTACCAGTAGGCGACGAAGAGTG
TTGATTTCTCATGGTAGTTGATTCAGGCCCCATTTTGTCTGCGTGCATGA
TTCCATGTGTGTGTACGGCGTTGTTGTTGCTGTTGTAGGCAGCTATTAAA
TAGCTGCGAGGAGTTTGTTCAGCCGGTGAGAGGGTGGGCTCGACCGTCGC
GCACTTCCTGCGGCCATCTCTGTGCATTGATGTGCGAAGCGTTTTGCGTG
CGTCGTGTACGCTCCCTGAGCGACTACGTTGTGGTATTATTTAGCTATTG
GATTGTGCCTACAGTCCCGCCGGCACGAAGGATTCGTTTTGTGGATCACC
CATCTGGCCTCTAGAATCACCAATCGGTTGTCTATTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTTTCACGCTCT
GTTTATCTCTTTATCTCTTTCTCTCTCACTCTCTCTTTCTCTCTCTCTCT
CTCCCTCTTTTTCTCTCTCTGGCTTCTTGCGGGCCACAGCTGCAAGTGCG
TCCTGACGGGCAAGAGCGAGGCGGAGCTGGCGGATATGAAGGAGTGCCCA
TACGATCCCGGAGGGTACTTCGTCGTCAAGGGAGTGGAAAAGGTGGGCAA
GGTTAAGGTCTGTCCGCTTGATTCACAACCTTTTTGA
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Coding sequence (CDS) from alignment at chr_00:3200250..3201086+

>Ec-00_003160.1 ID=Ec-00_003160.1|Name=Ec-00_003160.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=297bp|location=Sequence derived from alignment at chr_00:3200250..3201086+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTGCCCCCTAGTCACGCCGTTCCAATGTCGACTACGCGACTGCACGTA
CTCCGCTCCCCTGTGGGTGAACGTCCGGTACACGCGAGGTCGCCAAATCG
TCAACAAGACCAACATCAACATCGGCCGCATCCCAGTCATGCTGCTCAGC
TGCAAGTGCGTCCTGACGGGCAAGAGCGAGGCGGAGCTGGCGGATATGAA
GGAGTGCCCATACGATCCCGGAGGGTACTTCGTCGTCAAGGGAGTGGAAA
AGGTGGGCAAGGTTAAGGTCTGTCCGCTTGATTCACAACCTTTTTGA
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Synonyms
The feature 'Ec-00_003160.1' has the following synonyms
Synonym
Esi1847_0002
Esi_1847_0002