Ec-00_003150.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_003150.1
Unique NameEc-00_003150.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length49
Homology
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BLAST of Ec-00_003150.1 vs. uniprot
Match: D7FU02_ECTSI (Signal transducer, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU02_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 1.110e-21
Identity = 44/48 (91.67%), Postives = 45/48 (93.75%), Query Frame = 1 
Query:    1 METNFQREFVETEGFRRIADASELEQRENRLLRAGGFLPPDTPPSPSV 144
            METNFQREFVETEGFRRI DA+ELEQRENRLLRAGGFLPPD PPSP V
Sbjct:  127 METNFQREFVETEGFRRIVDAAELEQRENRLLRAGGFLPPDAPPSPCV 174
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BLAST of Ec-00_003150.1 vs. uniprot
Match: A0A6H5K499_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K499_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 3.760e-21
Identity = 42/48 (87.50%), Postives = 45/48 (93.75%), Query Frame = 1 
Query:    1 METNFQREFVETEGFRRIADASELEQRENRLLRAGGFLPPDTPPSPSV 144
            METNFQREFVETEGFRRI DA+E EQRENRLL+AGGFLPPD+PPSP V
Sbjct:   53 METNFQREFVETEGFRRIVDAAEQEQRENRLLQAGGFLPPDSPPSPCV 100
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BLAST of Ec-00_003150.1 vs. uniprot
Match: A0A6H5JJQ0_9PHAE (RGS domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JJQ0_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 3.060e-19
Identity = 43/45 (95.56%), Postives = 44/45 (97.78%), Query Frame = 1 
Query:    1 METNFQREFVETEGFRRIADASELEQRENRLLRAGGFLPPDTPPS 135
            METNFQREFVETEGFRRI +ASELEQRENRLLRAGGFLPPDTPPS
Sbjct:  410 METNFQREFVETEGFRRIVEASELEQRENRLLRAGGFLPPDTPPS 454
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BLAST of Ec-00_003150.1 vs. uniprot
Match: D7FTZ9_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTZ9_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 5.800e-16
Identity = 39/48 (81.25%), Postives = 41/48 (85.42%), Query Frame = 1 
Query:    1 METNFQREFVETEGFRRIADASELEQRENRLLRAGGFLPPDTPPSPSV 144
            ME  F+ EFVETEGFRRIA+ASELEQRE RLLRAGGFLPP TPP P V
Sbjct:  383 MEAEFKAEFVETEGFRRIANASELEQREKRLLRAGGFLPPSTPPGPCV 430
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BLAST of Ec-00_003150.1 vs. uniprot
Match: D7FIS3_ECTSI (Similar to retinally abundant regulator of G-protein signaling hRGS-r n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIS3_ECTSI)

HSP 1 Score: 68.6 bits (166), Expect = 2.920e-12
Identity = 35/43 (81.40%), Postives = 37/43 (86.05%), Query Frame = 1 
Query:    1 METNFQREFVETEGFRRIADASELEQRENRLLRAGGFLPPDTP 129
            METNFQREFV TEGFRRIADASE+E RE RLLRAGG LP  +P
Sbjct:  219 METNFQREFVTTEGFRRIADASEVEHREIRLLRAGGMLPSASP 261
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BLAST of Ec-00_003150.1 vs. uniprot
Match: A0A6H5KDM3_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDM3_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 2.930e-12
Identity = 35/43 (81.40%), Postives = 37/43 (86.05%), Query Frame = 1 
Query:    1 METNFQREFVETEGFRRIADASELEQRENRLLRAGGFLPPDTP 129
            METNFQREFV TEGFRRIADASE+E RE RLLRAGG LP  +P
Sbjct:  250 METNFQREFVTTEGFRRIADASEVEHREIRLLRAGGMLPSASP 292
[Close]
BLAST of Ec-00_003150.1 vs. uniprot
Match: A0A6H5K0N5_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0N5_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 9.950e-12
Identity = 35/46 (76.09%), Postives = 37/46 (80.43%), Query Frame = 1 
Query:    1 METNFQREFVETEGFRRIADASELEQRENRLLRAGGFLPPDTPPSP 138
            METNFQR+FVETEGFRRI DASELEQRE RLLRA G L P    +P
Sbjct:  291 METNFQRDFVETEGFRRIVDASELEQREMRLLRAEGVLVPSASTTP 336
[Close]
BLAST of Ec-00_003150.1 vs. uniprot
Match: D7FTZ7_ECTSI (Similar to regulator of G-protein signaling 16 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTZ7_ECTSI)

HSP 1 Score: 65.5 bits (158), Expect = 3.560e-11
Identity = 33/46 (71.74%), Postives = 37/46 (80.43%), Query Frame = 1 
Query:    1 METNFQREFVETEGFRRIADASELEQRENRLLRAGGFLPPDTPPSP 138
            METNFQR+F+ETEGFRRI DASELEQR+ RLLRA G L P    +P
Sbjct:  342 METNFQRDFIETEGFRRIVDASELEQRQMRLLRAEGVLVPSASTTP 387
[Close]
BLAST of Ec-00_003150.1 vs. uniprot
Match: D7FU07_ECTSI (Signal transducer, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU07_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 6.520e-11
Identity = 33/45 (73.33%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:    1 METNFQREFVETEGFRRIADASELEQRENRLLRAGGFLPPDTPPS 135
            METNFQ++FVETEGFRRIADAS LEQ+E RLLR  GFL  D  P+
Sbjct:  137 METNFQQDFVETEGFRRIADASALEQQEIRLLRKEGFLVADASPT 181
[Close]
BLAST of Ec-00_003150.1 vs. uniprot
Match: D7FTZ5_ECTSI (Signal transducer, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTZ5_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 9.130e-11
Identity = 33/47 (70.21%), Postives = 40/47 (85.11%), Query Frame = 1 
Query:    1 METNFQREFVETEGFRRIADASELEQRENRLLRAGGFLPPDTPPSPS 141
            METNFQ +FVETEGFRRI +A+ELEQR+ RLL+A GFL P+T  SP+
Sbjct:  345 METNFQTDFVETEGFRRIVNAAELEQRQIRLLQAEGFLLPNTGTSPT 391
The following BLAST results are available for this feature:
BLAST of Ec-00_003150.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
D7FU02_ECTSI1.110e-2191.67Signal transducer, putative n=1 Tax=Ectocarpus sil... [more]
A0A6H5K499_9PHAE3.760e-2187.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJQ0_9PHAE3.060e-1995.56RGS domain-containing protein n=3 Tax=Ectocarpus T... [more]
D7FTZ9_ECTSI5.800e-1681.25RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FIS3_ECTSI2.920e-1281.40Similar to retinally abundant regulator of G-prote... [more]
A0A6H5KDM3_9PHAE2.930e-1281.40RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K0N5_9PHAE9.950e-1276.09RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FTZ7_ECTSI3.560e-1171.74Similar to regulator of G-protein signaling 16 n=1... [more]
D7FU07_ECTSI6.520e-1173.33Signal transducer, putative n=1 Tax=Ectocarpus sil... [more]
D7FTZ5_ECTSI9.130e-1170.21Signal transducer, putative n=1 Tax=Ectocarpus sil... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:3198313..3198893 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score98.2
Seed ortholog evalue1.1e-18
Seed eggNOG ortholog2880.D7FU04
Preferred nameRGS1
Length147
KEGG koko:K16449
Hectar predicted targeting categoryno signal peptide or anchor
Gene idEc-00_003150.1
GOsGO:0001101,GO:0003674,GO:0004888,GO:0004930,GO:0005096,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005768,GO:0005886,GO:0006950,GO:0007154,GO:0007165,GO:0007186,GO:0008047,GO:0008150,GO:0009414,GO:0009415,GO:0009628,GO:0009719,GO:0009725,GO:0009737,GO:0009743,GO:0009746,GO:0009749,GO:0009756,GO:0009987,GO:0010008,GO:0010033,GO:0010035,GO:0010182,GO:0012505,GO:0016020,GO:0023052,GO:0030234,GO:0030695,GO:0031090,GO:0031410,GO:0031982,GO:0033993,GO:0034284,GO:0038023,GO:0042127,GO:0042221,GO:0043085,GO:0043087,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043547,GO:0044093,GO:0044422,GO:0044424,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051336,GO:0051345,GO:0051716,GO:0060089,GO:0060589,GO:0065007,GO:0065009,GO:0070887,GO:0071310,GO:0071322,GO:0071944,GO:0097305,GO:0097708,GO:0098588,GO:0098772,GO:0098805,GO:1901700,GO:1901701
EggNOG free text desc.Regulator of G protein signaling domain
EggNOG OGs2CNEE@1,2QVMV@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_003150Ec-00_003150Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 3198313..3198893 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003150.1.1Ec-00_003150.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3198313..3198318 +
Ec-00_003150.1.2Ec-00_003150.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3198753..3198893 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003150.1CDS:Ec-00_003150.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 3198313..3198318 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003150.1Ec-00_003150.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 3198313..3198893 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_003150.1 ID=Ec-00_003150.1|Name=Ec-00_003150.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=49bp
METNFQREFVETEGFRRIADASELEQRENRLLRAGGFLPPDTPPSPSV*
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spliced messenger RNA

>Ec-00_003150.1 ID=Ec-00_003150.1|Name=Ec-00_003150.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=147bp|location=Sequence derived from alignment at chr_00:3198313..3198893+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGACCAACTTCCAGAGGGAGTTCGTAGAAACAGAGGGGTTCCGCCG
AATCGCCGATGCTTCCGAGCTAGAGCAGCGAGAGAACCGTCTCCTGCGGG
CCGGGGGCTTCTTGCCGCCGGACACCCCGCCTTCGCCCAGTGTGTGA
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protein sequence of Ec-00_003150.1

>Ec-00_003150.1 ID=Ec-00_003150.1|Name=Ec-00_003150.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=49bp
METNFQREFVETEGFRRIADASELEQRENRLLRAGGFLPPDTPPSPSV*
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mRNA from alignment at chr_00:3198313..3198893+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_003150.1 ID=Ec-00_003150.1|Name=Ec-00_003150.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=581bp|location=Sequence derived from alignment at chr_00:3198313..3198893+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGAGGTAAGGATGAAGACGAGATGGGCACGACATCGCCTCTGGCTATC
GCTCGACTGAAGACCTCTCTTGTTTCCTATTGTCGTTGTCGTTGTCGTTG
GCTGTCAAATGAGATTTTTGTGCTTCGTCTTGTGGTGACCTCCGTGGCCC
GACCATAGCCACACCGTGGTGATGAGGCGGTACGTAATGTTGTGCCGGAA
ACGTGCTGCCTTGTATTTCCAGCGCTTTGATTTTCGCGCCGTTCTTCGTC
CGATATATACCGAACAACGGCGTGACACCCAAACCAAGCTACCACCGCCC
AGTCTTGCACCCCAGCGCTGTTCATCGACCAAGCTGCATGACACACAGCC
GGCTTTGGTAAGGGATTCTATGCTATATTCCACCTCTCTCTCCGCGCCGT
CTCTTCGCCGCCCCTACAAACTTGAAATCGATGACCGCAGACCAACTTCC
AGAGGGAGTTCGTAGAAACAGAGGGGTTCCGCCGAATCGCCGATGCTTCC
GAGCTAGAGCAGCGAGAGAACCGTCTCCTGCGGGCCGGGGGCTTCTTGCC
GCCGGACACCCCGCCTTCGCCCAGTGTGTGA
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Coding sequence (CDS) from alignment at chr_00:3198313..3198893+

>Ec-00_003150.1 ID=Ec-00_003150.1|Name=Ec-00_003150.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=147bp|location=Sequence derived from alignment at chr_00:3198313..3198893+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGAGACCAACTTCCAGAGGGAGTTCGTAGAAACAGAGGGGTTCCGCCG
AATCGCCGATGCTTCCGAGCTAGAGCAGCGAGAGAACCGTCTCCTGCGGG
CCGGGGGCTTCTTGCCGCCGGACACCCCGCCTTCGCCCAGTGTGTGA
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Synonyms
The feature 'Ec-00_003150.1' has the following synonyms
Synonym
Esi1846_0001
Esi_1846_0001