Ec-00_003080.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_003080.1
Unique NameEc-00_003080.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length170
Homology
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BLAST of Ec-00_003080.1 vs. uniprot
Match: D7FZK0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZK0_ECTSI)

HSP 1 Score: 301 bits (772), Expect = 1.830e-92
Identity = 164/165 (99.39%), Postives = 165/165 (100.00%), Query Frame = 2 
Query:   44 DEHPYGGVVVIDPDLVRSGGSSNGXXSARSSIPRSSVDDEARSGGRRSWTASPPTAEMSTQTTQGEEGVAHVLVQAGDGKLLSEAELREEYTQRELRERLEMMNHDLLAEVFHREIVKQEEAQKRRKQLEAHEAEVLALRDELHAVQMSHNNEKIKMRWEHADEV 538
            DEHPYGGVVVIDPDLVRSGGSSNGXXSARSSIPRSSVDDEARSGGRRSWTASPPTAEMSTQTTQGEEGVAHVLVQAGDGKLLSEAELREEYTQRELRERLEMMNHDLLAEVFHREIVKQEEAQKRRKQLEAHEAEVLALRDELHAVQMSHNNEKIKMRWEHADE+
Sbjct:  913 DEHPYGGVVVIDPDLVRSGGSSNGXXSARSSIPRSSVDDEARSGGRRSWTASPPTAEMSTQTTQGEEGVAHVLVQAGDGKLLSEAELREEYTQRELRERLEMMNHDLLAEVFHREIVKQEEAQKRRKQLEAHEAEVLALRDELHAVQMSHNNEKIKMRWEHADEL 1077
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BLAST of Ec-00_003080.1 vs. uniprot
Match: A0A6H5JIX2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIX2_9PHAE)

HSP 1 Score: 282 bits (721), Expect = 9.280e-85
Identity = 153/165 (92.73%), Postives = 158/165 (95.76%), Query Frame = 2 
Query:   44 DEHPYGGVVVIDPDLVRSGGSSNGXXSARSSIPRSSVDDEARSGGRRSWTASPPTAEMSTQTTQGEEGVAHVLVQAGDGKLLSEAELREEYTQRELRERLEMMNHDLLAEVFHREIVKQEEAQKRRKQLEAHEAEVLALRDELHAVQMSHNNEKIKMRWEHADEV 538
            DEHPYGGVVVIDPDLVRSGGSS  XX ARSSIPRSS DDEARSGGRRSWTA PPTA+MSTQTTQ EEGVAH+LVQAGDGKLLSEAELREEYTQRELRERLEMMNHDLLAEVFHREIVKQEEAQKRRKQ EAHEAE+LALR+ELHAVQMSHNNEKIKMRWEHADE+
Sbjct: 1410 DEHPYGGVVVIDPDLVRSGGSSXXXXXARSSIPRSSFDDEARSGGRRSWTACPPTADMSTQTTQAEEGVAHILVQAGDGKLLSEAELREEYTQRELRERLEMMNHDLLAEVFHREIVKQEEAQKRRKQQEAHEAEILALRNELHAVQMSHNNEKIKMRWEHADEL 1574
[Close]
BLAST of Ec-00_003080.1 vs. uniprot
Match: D7FNX0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNX0_ECTSI)

HSP 1 Score: 190 bits (482), Expect = 3.470e-59
Identity = 104/108 (96.30%), Postives = 105/108 (97.22%), Query Frame = 2 
Query:   29 MVFISDEHPYGGVVVIDPDLVRSGGSSNGXXSARSSIPRSSVDDEARSGGRRSWTASPPTAEMSTQTTQGEEGVAHVLVQAGDGKLLSEAELREEYTQRELRERLEMM 352
            MVFISDEHPYGGVVVIDPDLVRSGGSSN XXSARSSIPRSSVDDEARSGGRRSWTASPPTAEMSTQTTQGEEGVAHVLVQAGDGKLLSEAELREEYTQRELR+R  MM
Sbjct:    1 MVFISDEHPYGGVVVIDPDLVRSGGSSNXXXSARSSIPRSSVDDEARSGGRRSWTASPPTAEMSTQTTQGEEGVAHVLVQAGDGKLLSEAELREEYTQRELRQRSNMM 108
The following BLAST results are available for this feature:
BLAST of Ec-00_003080.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FZK0_ECTSI1.830e-9299.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JIX2_9PHAE9.280e-8592.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FNX0_ECTSI3.470e-5996.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:3171708..3173140 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length539
Hectar predicted targeting categoryother localisation
Gene idEc-00_003080.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_003080Ec-00_003080Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 3171708..3173140 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003080.1.1Ec-00_003080.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3171708..3171871 +
Ec-00_003080.1.2Ec-00_003080.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3172231..3172401 +
Ec-00_003080.1.3Ec-00_003080.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3172937..3173140 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0030805UTR:Ec-00_003080.1Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_00 3171708..3171736 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003080.1CDS:Ec-00_003080.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 3171737..3171871 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003080.1Ec-00_003080.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 3171737..3173140 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_003080.1 ID=Ec-00_003080.1|Name=Ec-00_003080.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=170bp
MVFISDEHPYGGVVVIDPDLVRSGGSSNGGGSARSSIPRSSVDDEARSGG
RRSWTASPPTAEMSTQTTQGEEGVAHVLVQAGDGKLLSEAELREEYTQRE
LRERLEMMNHDLLAEVFHREIVKQEEAQKRRKQLEAHEAEVLALRDELHA
VQMSHNNEKIKMRWEHADEV
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spliced messenger RNA

>Ec-00_003080.1 ID=Ec-00_003080.1|Name=Ec-00_003080.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=539bp|location=Sequence derived from alignment at chr_00:3171708..3173140+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
TGTACAACCCGAACGTATTATCGTAACCTATGGTGTTCATCAGCGACGAG
CACCCCTACGGCGGCGTTGTTGTCATCGACCCGGACCTTGTGCGTTCCGG
AGGGTCTAGCAACGGGGGCGGTTCCGCGCGGTCTTCTATTCCACGGTCTT
CCGTGGACGACGAGGCTCGCTCCGGCGGGCGTCGGTCGTGGACCGCAAGC
CCACCTACGGCGGAGATGTCCACACAGACCACCCAAGGGGAGGAAGGTGT
TGCCCACGTCCTGGTGCAGGCGGGAGACGGGAAGCTGCTGTCCGAGGCGG
AGTTGCGGGAGGAGTACACCCAGCGAGAGCTAAGGGAGAGGTTGGAGATG
ATGAACCACGACCTCCTCGCCGAGGTGTTTCACCGGGAGATCGTCAAGCA
GGAGGAGGCGCAGAAGCGCCGGAAGCAACTGGAGGCCCACGAGGCAGAGG
TCCTGGCTCTAAGGGACGAGCTCCATGCCGTCCAGATGAGCCACAACAAC
GAGAAAATCAAGATGCGCTGGGAGCACGCCGACGAGGTA
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protein sequence of Ec-00_003080.1

>Ec-00_003080.1 ID=Ec-00_003080.1|Name=Ec-00_003080.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=170bp
MVFISDEHPYGGVVVIDPDLVRSGGSSNGGGSARSSIPRSSVDDEARSGG
RRSWTASPPTAEMSTQTTQGEEGVAHVLVQAGDGKLLSEAELREEYTQRE
LRERLEMMNHDLLAEVFHREIVKQEEAQKRRKQLEAHEAEVLALRDELHA
VQMSHNNEKIKMRWEHADEV
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mRNA from alignment at chr_00:3171708..3173140+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_003080.1 ID=Ec-00_003080.1|Name=Ec-00_003080.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1433bp|location=Sequence derived from alignment at chr_00:3171708..3173140+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
TGTACAACCCGAACGTATTATCGTAACCTATGGTGTTCATCAGCGACGAG
CACCCCTACGGCGGCGTTGTTGTCATCGACCCGGACCTTGTGCGTTCCGG
AGGGTCTAGCAACGGGGGCGGTTCCGCGCGGTCTTCTATTCCACGGTCTT
CCGTGGACGACGAGGTAACAAGAATGCAACAAACGCCAATAAGAAAAACG
ATGGCGTGGCAGTCATAGAGCCGGCACAAAGGCTTCTGTCCAAGGCTAGT
GGATCACACGCGAGGGAGACGAGACAGAGGCTGTCCTTGCCGTCCAGGAG
GGCTGAAACGGATAGAAGCTGTCATCCCGCTGCGGTTACTGGGACGGGAA
TTATTGTTGCATAGGGTAGGCGCCGTGCGGATAGTTTTCGGTCACGACTG
CAACACGACAAGCCGCATTCCAACCGGTGCATGCATGCGGAACTGCTTAA
TACGAGTCACCTTGTTTGTTTGGATGGTGTTTCGTGTGTGTTTTAACTTT
GAATCCGTTGTCCCTCTCCAAAGGCTCGCTCCGGCGGGCGTCGGTCGTGG
ACCGCAAGCCCACCTACGGCGGAGATGTCCACACAGACCACCCAAGGGGA
GGAAGGTGTTGCCCACGTCCTGGTGCAGGCGGGAGACGGGAAGCTGCTGT
CCGAGGCGGAGTTGCGGGAGGAGTACACCCAGCGAGAGCTAAGGGTGAGA
GAGAGGGAGGGGGGGGTGCTACTCGCTCGAAAGTACGGTTTGTTGGGCCG
CTGGACTCGTGTTGAACACTTGAGGGACGAAGGGGCGAGATGGGTGCGAT
CGCCCTGCTCATGTAGTGTCATGCTGAATTTGAAGCTGCAGCCCTCGCAT
CTATTTCAGTACCGACTTCTTGCACTCTTGCGGTTTCTGCATGAGCGGGC
TGGTATTTGTTTCGTTTTGATGTGTTTTTCGGTTGTGATTTTTTGTCGTT
GCTGCCGCTGTTGCTGCATTTGCTGCTCCAGCAAAGGTCGAACATGATGT
GGACCACAAACCTCTATCGCGCTGACACGATGCCCACGAAAAACCAACCG
TACGCCTACGTCTGTTCCTGCCCTGGCACCTTCCGTTGCTCGTAACGTGC
CGGTGCGGACGGCAAACCTCTATCGCGCTGACACGATGCCCACGAAAAAC
CAACCGTACGCTTACGTCTGTTCCTACCCTGGCACCTTCCGTTGCTCGTA
ACGTGCCGCTGCTGCTGCTGTTATCGTAGGAGAGGTTGGAGATGATGAAC
CACGACCTCCTCGCCGAGGTGTTTCACCGGGAGATCGTCAAGCAGGAGGA
GGCGCAGAAGCGCCGGAAGCAACTGGAGGCCCACGAGGCAGAGGTCCTGG
CTCTAAGGGACGAGCTCCATGCCGTCCAGATGAGCCACAACAACGAGAAA
ATCAAGATGCGCTGGGAGCACGCCGACGAGGTA
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Coding sequence (CDS) from alignment at chr_00:3171708..3173140+

>Ec-00_003080.1 ID=Ec-00_003080.1|Name=Ec-00_003080.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=510bp|location=Sequence derived from alignment at chr_00:3171708..3173140+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGTGTTCATCAGCGACGAGCACCCCTACGGCGGCGTTGTTGTCATCGA
CCCGGACCTTGTGCGTTCCGGAGGGTCTAGCAACGGGGGCGGTTCCGCGC
GGTCTTCTATTCCACGGTCTTCCGTGGACGACGAGGCTCGCTCCGGCGGG
CGTCGGTCGTGGACCGCAAGCCCACCTACGGCGGAGATGTCCACACAGAC
CACCCAAGGGGAGGAAGGTGTTGCCCACGTCCTGGTGCAGGCGGGAGACG
GGAAGCTGCTGTCCGAGGCGGAGTTGCGGGAGGAGTACACCCAGCGAGAG
CTAAGGGAGAGGTTGGAGATGATGAACCACGACCTCCTCGCCGAGGTGTT
TCACCGGGAGATCGTCAAGCAGGAGGAGGCGCAGAAGCGCCGGAAGCAAC
TGGAGGCCCACGAGGCAGAGGTCCTGGCTCTAAGGGACGAGCTCCATGCC
GTCCAGATGAGCCACAACAACGAGAAAATCAAGATGCGCTGGGAGCACGC
CGACGAGGTA
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Synonyms
The feature 'Ec-00_003080.1' has the following synonyms
Synonym
Esi1828_0001
Esi_1828_0001