Ec-00_003060.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_003060.1
Unique NameEc-00_003060.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length158
Homology
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BLAST of Ec-00_003060.1 vs. uniprot
Match: D7FL86_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL86_ECTSI)

HSP 1 Score: 283 bits (724), Expect = 3.850e-96
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 1 
Query:    1 MPSVLRETGEKQNVQPLTDIETFQDVLVYKRATIARKYVSTWFGPDVLGTVPFASLIGLFITTVDSLQSVNFLRXXXXXXXXXXXXXXXXSRKMAKVDFSRRLNPSIVRLIKLLGKIVFAGHLLGCTWFMVDECDVDGGDDMWPKCGGESLGSKARL 471
            MPSVLRETGEKQNVQPLTDIETFQDVLVYKRATIARKYVSTWFGPDVLGTVPFASLIGLFITTVDSLQSVNFLRXXXXXXXXXXXXXXXXSRKMAKVDFSRRLNPSIVRLIKLLGKIVFAGHLLGCTWFMVDECDVDGGDDMWPKCGGESLGSKARL
Sbjct:    1 MPSVLRETGEKQNVQPLTDIETFQDVLVYKRATIARKYVSTWFGPDVLGTVPFASLIGLFITTVDSLQSVNFLRXXXXXXXXXXXXXXXXSRKMAKVDFSRRLNPSIVRLIKLLGKIVFAGHLLGCTWFMVDECDVDGGDDMWPKCGGESLGSKARL 157
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BLAST of Ec-00_003060.1 vs. uniprot
Match: A0A6H5KTC9_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTC9_9PHAE)

HSP 1 Score: 223 bits (567), Expect = 2.050e-70
Identity = 114/146 (78.08%), Postives = 116/146 (79.45%), Query Frame = 1 
Query:   70 QDVLVYKRATIARKYVSTWFGPDVLGTVPFASLIGLFITTVDSLQSVNFLRXXXXXXXXXXXXXXXX-------------SRKMAKVDFSRRLNPSIVRLIKLLGKIVFAGHLLGCTWFMVDECDVDGGDDMWPKCGGESLGSKAR 468
            +DVLVYKRATIARKYVSTWFGPDVLGTVPFASLIGLFITTVDSLQSVNFLR                             SRKMAKVDFSRRLNPSIVRLIKLLGKIVFAGHLLGCTWF+VDECDVDGGDDMWPKCGGESLGSK R
Sbjct:  131 EDVLVYKRATIARKYVSTWFGPDVLGTVPFASLIGLFITTVDSLQSVNFLRQDGFVFANYVVAALVRVFRLLKXXXXXXXSRKMAKVDFSRRLNPSIVRLIKLLGKIVFAGHLLGCTWFVVDECDVDGGDDMWPKCGGESLGSKVR 276
[Close]
BLAST of Ec-00_003060.1 vs. uniprot
Match: D8LJT9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJT9_ECTSI)

HSP 1 Score: 231 bits (589), Expect = 1.710e-67
Identity = 130/131 (99.24%), Postives = 131/131 (100.00%), Query Frame = 1 
Query:   70 QDVLVYKRATIARKYVSTWFGPDVLGTVPFASLIGLFITTVDSLQSVNFLRXXXXXXXXXXXXXXXXSRKMAKVDFSRRLNPSIVRLIKLLGKIVFAGHLLGCTWFMVDECDVDGGDDMWPKCGGESLGSK 462
            +DVLVYKRATIARKYVSTWFGPDVLGTVPFASLIGLFITTVDSLQSVNFLRXXXXXXXXXXXXXXXXSRKMAKVDFSRRLNPSIVRLIKLLGKIVFAGHLLGCTWFMVDECDVDGGDDMWPKCGGESLGSK
Sbjct:  176 EDVLVYKRATIARKYVSTWFGPDVLGTVPFASLIGLFITTVDSLQSVNFLRXXXXXXXXXXXXXXXXSRKMAKVDFSRRLNPSIVRLIKLLGKIVFAGHLLGCTWFMVDECDVDGGDDMWPKCGGESLGSK 306
[Close]
BLAST of Ec-00_003060.1 vs. uniprot
Match: A0A2D4BDQ3_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BDQ3_PYTIN)

HSP 1 Score: 52.8 bits (125), Expect = 5.020e-5
Identity = 43/119 (36.13%), Postives = 70/119 (58.82%), Query Frame = 1 
Query:   70 QDVLVYKRATIARKYVSTWFGPDVLGTVPFASLIGLFIT-----TVDSLQSVNFLRXXXXXXXXXXXXXXXXSRKMAKVDFSRRLNPSIVRLIKLLGKIVFAGHLLGCTWFMVDECDVD 411
            +D+L+  R  IA++YV+TWF PD++ ++P   + G  +      +V SL+    +RXXXXXXXXXXXX    +RK+  V     ++    RL +++G+++   H+L C W +V   D D
Sbjct:  165 EDMLITDRYLIAKRYVTTWFLPDLISSLPTEYIFGGVMDGSHDKSVVSLKLTRVIRXXXXXXXXXXXXLRQFARKIEDV---LEIDAVGARLSQVIGQVLLVTHILACFWHLVGYSDDD 280
The following BLAST results are available for this feature:
BLAST of Ec-00_003060.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FL86_ECTSI3.850e-96100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KTC9_9PHAE2.050e-7078.08Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
D8LJT9_ECTSI1.710e-6799.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A2D4BDQ3_PYTIN5.020e-536.13Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:3160896..3162226 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score231.1
Seed ortholog evalue3.6e-58
Seed eggNOG ortholog2880.D8LJT9
Length474
KEGG koko:K21867
KEGG TC1.A.1.4
Hectar predicted targeting categoryother localisation
Gene idEc-00_003060.1
EggNOG free text desc.voltage-gated potassium channel activity
EggNOG OGsKOG0498@1,KOG0498@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_003060Ec-00_003060Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 3160896..3162226 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003060.1.3Ec-00_003060.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3160896..3160907 -
Ec-00_003060.1.2Ec-00_003060.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3161080..3161320 -
Ec-00_003060.1.1Ec-00_003060.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3162006..3162226 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003060.1CDS:Ec-00_003060.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 3160896..3160907 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003060.1Ec-00_003060.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 3160896..3162226 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_003060.1 ID=Ec-00_003060.1|Name=Ec-00_003060.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=158bp
MPSVLRETGEKQNVQPLTDIETFQDVLVYKRATIARKYVSTWFGPDVLGT
VPFASLIGLFITTVDSLQSVNFLRLVRVFRLLKLMRILRLSRKMAKVDFS
RRLNPSIVRLIKLLGKIVFAGHLLGCTWFMVDECDVDGGDDMWPKCGGES
LGSKARL*
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spliced messenger RNA

>Ec-00_003060.1 ID=Ec-00_003060.1|Name=Ec-00_003060.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=474bp|location=Sequence derived from alignment at chr_00:3160896..3162226- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCTCGGTCCTACGAGAAACAGGAGAAAAGCAAAACGTTCAACCGTT
GACCGATATTGAAACATTTCAGGACGTTTTGGTTTACAAGCGAGCGACCA
TTGCGAGGAAGTACGTGTCGACGTGGTTTGGGCCGGACGTCTTGGGTACC
GTGCCTTTCGCATCGCTGATAGGGCTCTTCATCACCACCGTGGATAGCCT
GCAAAGCGTCAACTTCTTACGGCTGGTACGTGTGTTCCGGCTGCTGAAGC
TGATGCGGATCCTGCGGCTCTCTAGAAAAATGGCGAAAGTCGACTTCTCC
CGGCGGCTAAACCCCTCAATTGTGCGGCTCATCAAGCTGCTCGGAAAGAT
CGTGTTTGCTGGACACTTGCTTGGGTGCACGTGGTTCATGGTGGATGAGT
GCGACGTCGACGGCGGTGACGACATGTGGCCGAAATGTGGAGGGGAAAGC
CTCGGCTCAAAAGCGAGGCTCTGA
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protein sequence of Ec-00_003060.1

>Ec-00_003060.1 ID=Ec-00_003060.1|Name=Ec-00_003060.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=158bp
MPSVLRETGEKQNVQPLTDIETFQDVLVYKRATIARKYVSTWFGPDVLGT
VPFASLIGLFITTVDSLQSVNFLRLVRVFRLLKLMRILRLSRKMAKVDFS
RRLNPSIVRLIKLLGKIVFAGHLLGCTWFMVDECDVDGGDDMWPKCGGES
LGSKARL*
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mRNA from alignment at chr_00:3160896..3162226-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_003060.1 ID=Ec-00_003060.1|Name=Ec-00_003060.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1331bp|location=Sequence derived from alignment at chr_00:3160896..3162226- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCCCTCGGTCCTACGAGAAACAGGAGAAAAGCAAAACGTTCAACCGTT
GACCGATATTGAAACATTTCAGGACGTTTTGGTTTACAAGCGAGCGACCA
TTGCGAGGAAGTACGTGTCGACGTGGTTTGGGCCGGACGTCTTGGGTACC
GTGCCTTTCGCATCGCTGATAGGGCTCTTCATCACCACCGTGGATAGCCT
GCAAAGCGTCAACTTCTTACGGTAAGATGGCTTCGTCATGCCAACTACGT
GGTAGCAGCGTTCGGTGTTTTCTTGGCGTTGTTTCTGATACGGACGTTGC
TGGCCAAGGGTGTGCAGCTTTCTGATTTTACTTTTGTCGGTGCGTGTACG
CCCGTTCTTGAGCGAAAGGGCAGATCAGTCGTTAGTAGGTCAAGTTCCAA
CGCATGATCTGAGTCACCTGTGTCTCCTGTTATCCTCGCGTCAAGATTGG
ACCTGATCGGCCCGATGTAAGCGACGGGTTCGGTAAGACAATACCTGCCG
TTGTCTTCTGGTGCATCTGGCTGTGAATGGTGTAAGAATAGAAACTGAGT
AGATGCATGACAGGGTTGCCTGTTCGCTGTCCTGAAATATATCAGCCACG
TTAACCGACTGGCCAATGACGACACGTCATTCACCAATCAACGATCAGCG
TAACTCTGAACGAGATGATCTTATCCAAAAACCATCATCAGTGTGACGAA
CACAGCGAGAGGACGGTGCTCAGGTTCCGTGATACCTTAGGTCGTGGTTG
CTGGTAGAACTGTTGGTGTTGAACTGGTGTTGGTATTGGGGTTATCCTCA
TCAGCTATGTAGCTCGCCGAAAACACGCACACCGTGGTTGAAGCGAGCCA
AACAAAAAACCTGGACACAACTAACCGCTTCAAGCCAACGGTGCTGCAAA
TGTCAGGCTGGTACGTGTGTTCCGGCTGCTGAAGCTGATGCGGATCCTGC
GGCTCTCTAGAAAAATGGCGAAAGTCGACTTCTCCCGGCGGCTAAACCCC
TCAATTGTGCGGCTCATCAAGCTGCTCGGAAAGATCGTGTTTGCTGGACA
CTTGCTTGGGTGCACGTGGTTCATGGTGGATGAGTGCGACGTCGACGGCG
GTGACGACATGTGGCCGAAATGTGGAGGGGAAAGCCTCGGCTCAAAAGTG
AGAGAACGAGACAAATTTTTATATCCCAGAGCGTCAGTTATTGACTGGGG
AAAGGTGCTGCTGCTGTGGATAGGGGCGGAGCGGAGAGGGCAAGGACAAC
GCTCAAAGTATTATCTGTGTTCTTGATGAAACGATACGTAATTGGAAGCA
TCGTTCCCGTGGTATAAAGGCGAGGCTCTGA
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Coding sequence (CDS) from alignment at chr_00:3160896..3162226-

>Ec-00_003060.1 ID=Ec-00_003060.1|Name=Ec-00_003060.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=474bp|location=Sequence derived from alignment at chr_00:3160896..3162226- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCCCTCGGTCCTACGAGAAACAGGAGAAAAGCAAAACGTTCAACCGTT
GACCGATATTGAAACATTTCAGGACGTTTTGGTTTACAAGCGAGCGACCA
TTGCGAGGAAGTACGTGTCGACGTGGTTTGGGCCGGACGTCTTGGGTACC
GTGCCTTTCGCATCGCTGATAGGGCTCTTCATCACCACCGTGGATAGCCT
GCAAAGCGTCAACTTCTTACGGCTGGTACGTGTGTTCCGGCTGCTGAAGC
TGATGCGGATCCTGCGGCTCTCTAGAAAAATGGCGAAAGTCGACTTCTCC
CGGCGGCTAAACCCCTCAATTGTGCGGCTCATCAAGCTGCTCGGAAAGAT
CGTGTTTGCTGGACACTTGCTTGGGTGCACGTGGTTCATGGTGGATGAGT
GCGACGTCGACGGCGGTGACGACATGTGGCCGAAATGTGGAGGGGAAAGC
CTCGGCTCAAAAGCGAGGCTCTGA
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Synonyms
The feature 'Ec-00_003060.1' has the following synonyms
Synonym
Esi1816_0001
Esi_1816_0001