Ec-00_003030.2 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR
Overview
Homology
BLAST of Ec-00_003030.2 vs. uniprot
Match: D8LNG2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNG2_ECTSI) HSP 1 Score: 297 bits (760), Expect = 1.690e-95 Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 3 Query: 75 PMTSRGTLMNSPYDSPVWTHAFSTFLSSTDFGHPRFRFHWYFGFDAGDPIYDAAGAAAHLHKQFGKLAIEEFRRQGLTANDVEHRWRDGSLRLKAKHYLGMEHAPSYVVSALMQDAYDDGCDYLYQINDDTLINTPGW 488 PMTSRGTLMNSPYDSPVWTHAFSTFLSSTDFGHPRFRFHWYFGFDAGDPIYDAAGAAAHLHKQFGKLAIEEFRRQGLTANDVEHRWRDGSLRLKAKHYLGMEHAPSYVVSALMQDAYDDGCDYLYQINDDTLINTPGW Sbjct: 347 PMTSRGTLMNSPYDSPVWTHAFSTFLSSTDFGHPRFRFHWYFGFDAGDPIYDAAGAAAHLHKQFGKLAIEEFRRQGLTANDVEHRWRDGSLRLKAKHYLGMEHAPSYVVSALMQDAYDDGCDYLYQINDDTLINTPGW 484
BLAST of Ec-00_003030.2 vs. uniprot
Match: A0A7S2FLT9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FLT9_9STRA) HSP 1 Score: 102 bits (253), Expect = 9.060e-24 Identity = 57/144 (39.58%), Postives = 80/144 (55.56%), Query Frame = 3 Query: 69 VHPMTSRGTLMNSPYDSPVWTHAFSTFLSSTDFGHPRFRFHWYFGFDAGDPIYDAAGAAAHLHKQFGKLAIEEFRRQGLTANDVEHRWRDG----SLRLKAKHYLGMEHAPSYVVSALMQDAYDDGCDYLYQINDDTLINTPGW 488 V PMTSRGT M++ SP W + F++F+ S D+ + + F +Y G D GD +YD A + + F K R+ LT +V + + L LK H+ G APS VV L+Q AYDDG DY +Q+NDDT+I + W Sbjct: 85 VVPMTSRGTDMSAVEQSPFWFNLFASFMESVDWDNNKHEFTFYLGLDKGDSLYDTGDAWSDMRSAFAKNT-----RRALTWLNVNNSTQKSVLGDQLHLKLMHFDGTSGAPSQVVCGLVQQAYDDGVDYFFQVNDDTVIVSKDW 223
BLAST of Ec-00_003030.2 vs. uniprot
Match: A0A7S3ZR36_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZR36_9STRA) HSP 1 Score: 92.8 bits (229), Expect = 5.760e-19 Identity = 54/146 (36.99%), Postives = 78/146 (53.42%), Query Frame = 3 Query: 69 VHPMTSRGTLMNSPYDSPVWTHAFSTFLSSTDFGHPRFRFHWYFGFDAGDPIYDAAGAAAHLHKQFGKLAIEEFRRQGLTANDVEHRWRDG------SLRLKAKHYLGMEHAPSYVVSALMQDAYDDGCDYLYQINDDTLINTPGW 488 V PMTSRGT M+ SP+W + F++F+ S D+ R FH+Y GFD GD +YD A + + + F A + R G N R DG ++ L H+ APS VS + + A +G DY+YQ+NDDT++ + W Sbjct: 348 VVPMTSRGTDMDGVEQSPLWFNLFASFVESVDWRKNRHTFHFYLGFDKGDDLYDTGDAWSEMRRAFRAHAKKALRWLGY-GNFTVARVADGIDGSKPAVDLTLVHFSDTAGAPSQAVSQMARMAVGEGADYIYQLNDDTILVSKDW 492
BLAST of Ec-00_003030.2 vs. uniprot
Match: A0A6V1PYQ3_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1PYQ3_HETAK) HSP 1 Score: 90.1 bits (222), Expect = 4.440e-18 Identity = 56/141 (39.72%), Postives = 76/141 (53.90%), Query Frame = 3 Query: 69 VHPMTSRGTLMNSPYDSPVWTHAFSTFLSSTDFGHPRFRFHWYFGFDAGDPIYDAAGAAAHLHKQFGKLAIEEFRRQ-GLTANDVEHRWRDGSLRLKAKHYLGMEHAPSYVVSALMQDAYDDGCDYLYQINDDTLINTPGW 488 + PMTS+GT M S +SP W + F TF S D+ R +F ++ GFD GDPIYD + K+F A Q G++ V + + L ++ + + APS VV+ L AYD G DY+YQINDDT I T W Sbjct: 111 IIPMTSKGTEMTSVKESPFWFNTFQTFCYSIDWAANRNKFTFFIGFDKGDPIYDLGDSWNDFRKEFKSNAGMGISWQTGMSPEKVTNIL-ETQLAVELHDFGDLAGAPSQVVNRLAGLAYDAGFDYIYQINDDTEIETKQW 250
BLAST of Ec-00_003030.2 vs. uniprot
Match: A0A7S2MG38_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MG38_9STRA) HSP 1 Score: 87.0 bits (214), Expect = 9.750e-18 Identity = 52/142 (36.62%), Postives = 74/142 (52.11%), Query Frame = 3 Query: 75 PMTSRGTLMNSPYDSPVWTHAFSTFLSSTDFGHPRFRFHWYFGFDAGDPIYDAAGAAAHLHKQFGKLAIEEFRRQGLT----ANDVEHRWRDGSLRLKAKHYLGMEHAPSYVVSALMQDAYDDGCDYLYQINDDTLINTPGW 488 PMTS+GT M + SP W + F++F+ S D+ F +Y GFD GDP+YD A + + FGK R+ LT N + + L L + + +PS VV L AY DG DY++Q+NDDT+I + W Sbjct: 17 PMTSKGTDMVTVDQSPFWFNLFASFMESIDWEKNEIEFSFYLGFDRGDPLYDTGDAWGEIRRTFGKNT-----RRALTWLNTPNATQAKVLKQGLILHLMDFDLPKGSPSQVVVGLANAAYKDGIDYMFQVNDDTVIVSHDW 153
BLAST of Ec-00_003030.2 vs. uniprot
Match: A0A7S2CTF8_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CTF8_9STRA) HSP 1 Score: 79.3 bits (194), Expect = 1.970e-14 Identity = 52/150 (34.67%), Postives = 78/150 (52.00%), Query Frame = 3 Query: 78 MTSRGTLMNSPYDSPVWTHAFSTFLSS------TDFGHPRFRFHWYFGFDAGDPIYDAAGAAAHLHKQFGKLAIEEFRRQ-------GLTANDVEHRWRDGSLRLKAKHYLGMEHAPSYVVSALMQDAYDDGCDYLYQINDDTLINTPGW 488 +TS+GT M+ SP +T +FL + + G RFR+ +Y G DAGD +YD+ A K+F +L + G++ +D E + L+ G APS+ V+ALM+ AYDDG D+L+Q+NDD + T GW Sbjct: 60 VTSKGTRMSDVTQSPFFTILLPSFLETFSPNTISHDGSSRFRYRFYVGCDAGDKLYDSEAA----RKKFSELFVRRVGHHRTNGFDDGVSKDDSED-----LIGLRLMSLEGTSGAPSWAVAALMKRAYDDGADWLFQLNDDARLLTLGW 200
BLAST of Ec-00_003030.2 vs. uniprot
Match: A0A0G4IYP7_PLABS (Uncharacterized protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IYP7_PLABS) HSP 1 Score: 68.6 bits (166), Expect = 1.100e-10 Identity = 38/104 (36.54%), Postives = 55/104 (52.88%), Query Frame = 3 Query: 177 RFRFHWYFGFDAGDPIYDAAGAAAHLHKQFGKLAIEEFRRQGLTANDVEHRWRDGSLRLKAKHYLGMEHAPSYVVSALMQDAYDDGCDYLYQINDDTLINTPGW 488 RF++ YFG+D GDP+YD AG +++ RR L H ++RL+ Y G+ P +V + L + A+DDGC Y YQ+NDD + T GW Sbjct: 92 RFQYDLYFGYDVGDPLYDDAGN------------LDDLRRIVLGMAAASHI----AMRLQTFAYDGVTGKPVHVWNRLARSAFDDGCHYFYQLNDDIVFRTAGW 179
BLAST of Ec-00_003030.2 vs. uniprot
Match: A0A7S4JR69_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4JR69_GUITH) HSP 1 Score: 58.2 bits (139), Expect = 6.530e-7 Identity = 30/104 (28.85%), Postives = 48/104 (46.15%), Query Frame = 3 Query: 177 RFRFHWYFGFDAGDPIYDAAGAAAHLHKQFGKLAIEEFRRQGLTANDVEHRWRDGSLRLKAKHYLGMEHAPSYVVSALMQDAYDDGCDYLYQINDDTLINTPGW 488 ++R+ Y GFD GDP++D + ++ + +++ + W Y G E ++ + L Q AY DG DY Y +NDD L+ TPGW Sbjct: 195 KYRYDVYLGFDKGDPVFDNDEMRREITRRMKSIT---------SSSPITFHW---------FQYEGFEGKVFWIYNDLFQQAYHDGADYFYMVNDDLLLITPGW 280
BLAST of Ec-00_003030.2 vs. uniprot
Match: A0A7S0E3Y7_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0E3Y7_9CRYP) HSP 1 Score: 54.7 bits (130), Expect = 9.570e-6 Identity = 33/104 (31.73%), Postives = 48/104 (46.15%), Query Frame = 3 Query: 177 RFRFHWYFGFDAGDPIYDAAGAAAHLHKQFGKLAIEEFRRQGLTANDVEHRWRDGSLRLKAKHYLGMEHAPSYVVSALMQDAYDDGCDYLYQINDDTLINTPGW 488 +R+ Y GFD GDP++D E R+Q +TA ++ +R Y G + ++ L + AY DG DY Y +NDD L+ TPGW Sbjct: 114 NYRYEVYLGFDKGDPVFDN----------------NEIRKQ-ITAT-MKSTTGSSPIRFHWFQYEGFQGKVFWIYDDLFRQAYHDGADYFYMVNDDLLLLTPGW 199 The following BLAST results are available for this feature:
BLAST of Ec-00_003030.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Ec-00_003030.2 ID=Ec-00_003030.2|Name=Ec-00_003030.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=137bpback to top spliced messenger RNA >Ec-00_003030.2 ID=Ec-00_003030.2|Name=Ec-00_003030.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=490bp|location=Sequence derived from alignment at chr_00:3140958..3142848- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon. ATCATTCGTTAGGCGGCGGAGCGCGACGCGGAGAGAAGAAACAACAGGAAback to top protein sequence of Ec-00_003030.2 >Ec-00_003030.2 ID=Ec-00_003030.2|Name=Ec-00_003030.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=137bp MTSRGTLMNSPYDSPVWTHAFSTFLSSTDFGHPRFRFHWYFGFDAGDPIYback to top mRNA from alignment at chr_00:3140958..3142848- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Ec-00_003030.2 ID=Ec-00_003030.2|Name=Ec-00_003030.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1891bp|location=Sequence derived from alignment at chr_00:3140958..3142848- (Ectocarpus species7 Ec32 male_plus_femaleSDR)back to top Coding sequence (CDS) from alignment at chr_00:3140958..3142848- >Ec-00_003030.2 ID=Ec-00_003030.2|Name=Ec-00_003030.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=411bp|location=Sequence derived from alignment at chr_00:3140958..3142848- (Ectocarpus species7 Ec32 male_plus_femaleSDR)back to top Synonyms
The feature 'Ec-00_003030.2' has the following synonyms
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