Ec-00_003010.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_003010.1
Unique NameEc-00_003010.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length83
Homology
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BLAST of Ec-00_003010.1 vs. uniprot
Match: D7G0J9_ECTSI (PKD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0J9_ECTSI)

HSP 1 Score: 99.0 bits (245), Expect = 2.490e-22
Identity = 52/87 (59.77%), Postives = 52/87 (59.77%), Query Frame = 1 
Query:    1 MHLDGAGVSDCDHWHDDAD----------------------------------SQGLTDYGESQIFAPDWFGDASPNNAMHTVDNGR 159
            MHLDGAGVSDCDHWHDDA                                   SQGLTDYGESQIFAPDWFGDASPNNAMHTVDNGR
Sbjct:  235 MHLDGAGVSDCDHWHDDAGIMTHHVGYTMLFEQALQVVDPSVTIPYWEYTIEYSQGLTDYGESQIFAPDWFGDASPNNAMHTVDNGR 321
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BLAST of Ec-00_003010.1 vs. uniprot
Match: A0A6H5KFJ6_9PHAE (TYR protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFJ6_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 3.580e-21
Identity = 51/90 (56.67%), Postives = 51/90 (56.67%), Query Frame = 1 
Query:    1 MHLDGAGVSDCDHWHDDAD-------------------------------------SQGLTDYGESQIFAPDWFGDASPNNAMHTVDNGR 159
            MHLDGAGVSDCDHWHDDA                                      SQGLTDYGESQIF PDWFGDASPNNAMHTVDNGR
Sbjct:  145 MHLDGAGVSDCDHWHDDAGIMTHHVGYTMLFEQALQVVDPAVTIPYWEYTIECGCHSQGLTDYGESQIFDPDWFGDASPNNAMHTVDNGR 234
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BLAST of Ec-00_003010.1 vs. uniprot
Match: A0A6H5L3M0_9PHAE (PKD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3M0_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 3.040e-16
Identity = 42/87 (48.28%), Postives = 48/87 (55.17%), Query Frame = 1 
Query:    1 MHLDGAGVSDCDHWHDDA----------------------------------DSQGLTDYGESQIFAPDWFGDASPNNAMHTVDNGR 159
            MHLDGAGV DCDHWHDDA                                   +QGLT+YGES IFA DWFG+ASP+N++HTVD GR
Sbjct:  233 MHLDGAGVKDCDHWHDDAGIMTHHVGYTLQFEQALQVVDPSVSIPYWEYTIESAQGLTEYGESTIFAADWFGEASPDNSLHTVDKGR 319
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BLAST of Ec-00_003010.1 vs. uniprot
Match: D7FSP4_ECTSI (PKD domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSP4_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 2.890e-13
Identity = 38/87 (43.68%), Postives = 45/87 (51.72%), Query Frame = 1 
Query:    1 MHLDGAGVSDCDHWHDDAD----------------------------------SQGLTDYGESQIFAPDWFGDASPNNAMHTVDNGR 159
            MHL+GAGVSDCDHWHDDA                                   + GL DY  S++FA DWFG+ASP+N +HTVD GR
Sbjct:  248 MHLNGAGVSDCDHWHDDAGIMTHHVGYTLLFEQALQVVDPAVTIPYWEYTIEAAAGLEDYDSSEVFASDWFGEASPDNELHTVDKGR 334
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BLAST of Ec-00_003010.1 vs. uniprot
Match: D7G0K0_ECTSI (Tyrosinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0K0_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 9.750e-13
Identity = 37/87 (42.53%), Postives = 45/87 (51.72%), Query Frame = 1 
Query:    1 MHLDGAGVSDCDHWHDDAD----------------------------------SQGLTDYGESQIFAPDWFGDASPNNAMHTVDNGR 159
            MHLDGA V +CDHWHDDA                                   + GL +YGESQ+F P WFGDASP+N++HTV +GR
Sbjct:   88 MHLDGAAVKECDHWHDDAGIVTHHVGFTLLFEQALQVVDPSVSIPYWEYTIEAALGLANYGESQVFHPGWFGDASPDNSLHTVTDGR 174
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BLAST of Ec-00_003010.1 vs. uniprot
Match: D7G0J8_ECTSI (Putative scytonemin-related tyrosinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0J8_ECTSI)

HSP 1 Score: 65.5 bits (158), Expect = 1.430e-10
Identity = 25/30 (83.33%), Postives = 28/30 (93.33%), Query Frame = 3 
Query:  156 PDAWDYVHNPYGLLRTPWNTDPTPYVTRHN 245
            PDAWD VHNPYGLLR+PWN +PTP+VTRHN
Sbjct:  328 PDAWDSVHNPYGLLRSPWNLNPTPFVTRHN 357
[Close]
BLAST of Ec-00_003010.1 vs. uniprot
Match: A0A6H5LKB4_9PHAE (TYR protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LKB4_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 2.360e-9
Identity = 24/29 (82.76%), Postives = 26/29 (89.66%), Query Frame = 3 
Query:  159 DAWDYVHNPYGLLRTPWNTDPTPYVTRHN 245
            DAWD VHNPYGLLR+PWN D TP+VTRHN
Sbjct:  329 DAWDSVHNPYGLLRSPWNVDDTPFVTRHN 357
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BLAST of Ec-00_003010.1 vs. uniprot
Match: A0A7S2AZT7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2AZT7_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 4.340e-6
Identity = 21/31 (67.74%), Postives = 24/31 (77.42%), Query Frame = 3 
Query:  159 DAWDY--VHNPYGLLRTPWNTDPTPYVTRHN 245
            DAW Y  + NPYGLLR+PWNT+P PYV R N
Sbjct:   33 DAWHYSNITNPYGLLRSPWNTNPVPYVMRSN 63
[Close]
BLAST of Ec-00_003010.1 vs. uniprot
Match: A0A7S2B036_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B036_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 1.570e-5
Identity = 17/30 (56.67%), Postives = 24/30 (80.00%), Query Frame = 3 
Query:  159 DAWDYVHNPYGLLRTPWNTDPTPYVTRHNM 248
            + W  +HNPYGLLR+PWNT+  PY TR+++
Sbjct:   93 EEWSEIHNPYGLLRSPWNTNSVPYFTRYDL 122
[Close]
BLAST of Ec-00_003010.1 vs. uniprot
Match: A0A7S2AZS3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2AZS3_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 3.530e-5
Identity = 19/28 (67.86%), Postives = 22/28 (78.57%), Query Frame = 3 
Query:  162 AWDYVHNPYGLLRTPWNTDPTPYVTRHN 245
             +  + NPYGLLR+PWNTD TPYV RHN
Sbjct:   75 GYSNITNPYGLLRSPWNTDSTPYVMRHN 102
The following BLAST results are available for this feature:
BLAST of Ec-00_003010.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D7G0J9_ECTSI2.490e-2259.77PKD domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KFJ6_9PHAE3.580e-2156.67TYR protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A6H5L3M0_9PHAE3.040e-1648.28PKD domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FSP4_ECTSI2.890e-1343.68PKD domain-containing protein n=2 Tax=Ectocarpus T... [more]
D7G0K0_ECTSI9.750e-1342.53Tyrosinase n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
D7G0J8_ECTSI1.430e-1083.33Putative scytonemin-related tyrosinase n=1 Tax=Ect... [more]
A0A6H5LKB4_9PHAE2.360e-982.76TYR protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]
A0A7S2AZT7_9STRA4.340e-667.74Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7S2B036_9STRA1.570e-556.67Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7S2AZS3_9STRA3.530e-567.86Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:3126289..3127771 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score99.8
Seed ortholog evalue6.5e-19
Seed eggNOG ortholog2880.D7G0J9
Length249
Hectar predicted targeting categoryother localisation
Gene idEc-00_003010.1
EggNOG free text desc.Common central domain of tyrosinase
EggNOG OGs2D2AI@1,2SM4K@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_003010Ec-00_003010Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 3126289..3127771 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003010.1.1Ec-00_003010.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3126289..3126343 +
Ec-00_003010.1.2Ec-00_003010.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3127045..3127147 +
Ec-00_003010.1.3Ec-00_003010.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3127681..3127771 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003010.1CDS:Ec-00_003010.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 3126289..3126343 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003010.1Ec-00_003010.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 3126289..3127771 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_003010.1 ID=Ec-00_003010.1|Name=Ec-00_003010.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=83bp
MHLDGAGVSDCDHWHDDADSQGLTDYGESQIFAPDWFGDASPNNAMHTVD
NGRTRGTTCTTRTAFCEPPGTPTRRRTSPATT*
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spliced messenger RNA

>Ec-00_003010.1 ID=Ec-00_003010.1|Name=Ec-00_003010.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=249bp|location=Sequence derived from alignment at chr_00:3126289..3127771+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACCTGGACGGGGCTGGCGTGAGCGACTGCGACCACTGGCACGACGA
TGCCGACTCGCAAGGGCTGACGGACTACGGGGAGTCGCAGATCTTCGCTC
CCGACTGGTTCGGCGACGCCTCCCCCAACAACGCCATGCACACCGTCGAC
AACGGCCGGACGCGTGGGACTACGTGCACAACCCGTACGGCCTTCTGCGA
ACCCCCTGGAACACCGACCCGACGCCGTACGTCACCCGCCACAACATGA
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protein sequence of Ec-00_003010.1

>Ec-00_003010.1 ID=Ec-00_003010.1|Name=Ec-00_003010.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=83bp
MHLDGAGVSDCDHWHDDADSQGLTDYGESQIFAPDWFGDASPNNAMHTVD
NGRTRGTTCTTRTAFCEPPGTPTRRRTSPATT*
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mRNA from alignment at chr_00:3126289..3127771+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_003010.1 ID=Ec-00_003010.1|Name=Ec-00_003010.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1483bp|location=Sequence derived from alignment at chr_00:3126289..3127771+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCACCTGGACGGGGCTGGCGTGAGCGACTGCGACCACTGGCACGACGA
TGCCGGTGGGTGTCTTGTAGAACAGGGGCGAGCGACCTTGCTTACAAATC
AAATGCAACAGCAGTGCAATGCAAATCCGATTTGTCCAGTCTCGTCGCGA
TCTAGGTTCTGCAGTGTTATTTTAGCCCCCATCATGTCGACGCCTAGACG
CGGTCTGTTACTTTGATCGCGTGTATGCGTATGTTTGGTTGTTGTATATA
CGGAAGGTGTCCTTGTGTCTGAGGTTCGATTTCGAAACGTAAGCCTGGCC
GTCGTTTTTGTCGCTTGCGACACGTCTGTCTACCGTTGGTCTTGTCTGGC
AGGCATCATGACGCACCACGTGGGGTACACCATGCTGTTCGAGCAGGCTC
TGCAGGTGGTCGATCCCTCCGTCACCATTCCGTACTGGGAGTACACCATC
GAATGTACGTTTTCGTCGTAAGCTGGGGAGGACGTTCTCTCTCTCTGTTT
GGTTTTGCTCGGTTTTTTTGACGGAGTGCATTTCAAGCGTCCCGCTGGCA
GTTTGTTGTTCGTTTGTCGATGGCTCGTTTTGAGTCGTTGCGTGATAGAG
ATCCCAATATATTTGTGGATTTGTAGAGATGGGGTTCTTTGCGCTATGAA
TGAACAATGTATTATCGTAGCATGTGAAAAAATTGCCTCTACGGTTGCAA
TTTTTTTTTTCATGGGGATCATCGTTGATGTTTCGTCGGCGTCGCCGTTG
TTGCAGACTCGCAAGGGCTGACGGACTACGGGGAGTCGCAGATCTTCGCT
CCCGACTGGTTCGGCGACGCCTCCCCCAACAACGCCATGCACACCGTCGA
CAACGGCCGGTGGGCCTACCTCCCAGTGATGCAGGCGAGTACCTGCTGCA
CATTGATTGGTCTACCGTATCTGTTCATACAACAGTCGACAATATTTTTA
GATATCACGGCGTCTGTTCGTTCCCATCGAATGTGTGTGTGTGGGTCTGG
CGTGAGATATTGGCTCTCGCTCTGTGTCCGTGTTGTTGTTGTTGTTGTTG
TTGCCGCACTGGTGGTAGTGGCGGTCGTTGTGCGGTACTTTTTGCTCAGC
GCAGCCCGAGCGCGCTCTTTGTTTTCCTGGCCATTGTTTTTGTTTTTTCG
AGGGTGCCCTTTCGTGCTCTCTCTCCCGCTCTTTCACTTGGACGAGACAT
TCACTCAGGATACACCCAAGAAAAACTCGTTATTTTTGCGCGCTGGGGAT
TACAGGCTTCACAGTTTTTTTTTAATTTTTTAACGAGTTGGCCTTGATGT
ATTGCGTACTCATGCGTTGTGTACATGAAGCATGTTGTACTCACCCCGCT
CTTTGTCGGCGCCTCTTCGTGCCTGATTGTCACGTGTCGCAGGACGCGTG
GGACTACGTGCACAACCCGTACGGCCTTCTGCGAACCCCCTGGAACACCG
ACCCGACGCCGTACGTCACCCGCCACAACATGA
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Coding sequence (CDS) from alignment at chr_00:3126289..3127771+

>Ec-00_003010.1 ID=Ec-00_003010.1|Name=Ec-00_003010.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=249bp|location=Sequence derived from alignment at chr_00:3126289..3127771+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCACCTGGACGGGGCTGGCGTGAGCGACTGCGACCACTGGCACGACGA
TGCCGACTCGCAAGGGCTGACGGACTACGGGGAGTCGCAGATCTTCGCTC
CCGACTGGTTCGGCGACGCCTCCCCCAACAACGCCATGCACACCGTCGAC
AACGGCCGGACGCGTGGGACTACGTGCACAACCCGTACGGCCTTCTGCGA
ACCCCCTGGAACACCGACCCGACGCCGTACGTCACCCGCCACAACATGA
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Synonyms
The feature 'Ec-00_003010.1' has the following synonyms
Synonym
Esi1792_0001
Esi_1792_0001