Ec-00_002970.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_002970.1
Unique NameEc-00_002970.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length117
Homology
[Close]
BLAST of Ec-00_002970.1 vs. uniprot
Match: D7G6N6_ECTSI (Protein kinase domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6N6_ECTSI)

HSP 1 Score: 233 bits (593), Expect = 4.240e-72
Identity = 115/116 (99.14%), Postives = 115/116 (99.14%), Query Frame = 1 
Query:    1 MLQPSLDTFSLGVMMLQVLFVEEGSRFSGKALATHGFTPKHPSFHSAVQNAAYLKQKFEATGTGIDKERFEDASTVVLDLHVNYAAQPAKMGDLRRTILNPSKWNQSGELLFQEEV 348
            MLQPSLDTFSLGVMMLQVLFVEEGSRFSGKALATHGFTPKHPSFHSAVQNAAYLKQKFEATGTGIDKERFEDASTVVLDLHVNYAAQPAKMGDLRRTILNPSKWNQSGELLFQEE 
Sbjct:  410 MLQPSLDTFSLGVMMLQVLFVEEGSRFSGKALATHGFTPKHPSFHSAVQNAAYLKQKFEATGTGIDKERFEDASTVVLDLHVNYAAQPAKMGDLRRTILNPSKWNQSGELLFQEET 525
[Close]
BLAST of Ec-00_002970.1 vs. uniprot
Match: D7FZ99_ECTSI (Kinase, CAMK CAMKL n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ99_ECTSI)

HSP 1 Score: 234 bits (597), Expect = 1.930e-70
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 1 
Query:    1 MLQPSLDTFSLGVMMLQVLFVEEGSRFSGKALATHGFTPKHPSFHSAVQNAAYLKQKFEATGTGIDKERFEDASTVVLDLHVNYAAQPAKMGDLRRTILNPSKWNQSGELLFQEEV 348
            MLQPSLDTFSLGVMMLQVLFVEEGSRFSGKALATHGFTPKHPSFHSAVQNAAYLKQKFEATGTGIDKERFEDASTVVLDLHVNYAAQPAKMGDLRRTILNPSKWNQSGELLFQEEV
Sbjct:  608 MLQPSLDTFSLGVMMLQVLFVEEGSRFSGKALATHGFTPKHPSFHSAVQNAAYLKQKFEATGTGIDKERFEDASTVVLDLHVNYAAQPAKMGDLRRTILNPSKWNQSGELLFQEEV 723
[Close]
BLAST of Ec-00_002970.1 vs. uniprot
Match: A0A6H5JGU0_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGU0_9PHAE)

HSP 1 Score: 199 bits (505), Expect = 1.280e-57
Identity = 110/168 (65.48%), Postives = 111/168 (66.07%), Query Frame = 1 
Query:    4 LQPSLDTFSLGVMMLQVLFVEEGSRFSGKA-----------------------------------------------------LATHGFTPKHPSFHSAVQNAAYLKQKFEATGTGIDKERFEDASTVVLDLHVNYAAQPAKMGDLRRTILNPSKWNQSGELLFQEEV 348
            LQPSLDTFSLGVMMLQVLFVEEGSRFSGKA                                                     LATHGFTPKHPSFHSAVQNAAYLKQKFE TGTGIDK+RFEDA TVVLDLHVNYA QPAKMGDLR TILNPSKWNQSGELLFQEEV
Sbjct:  483 LQPSLDTFSLGVMMLQVLFVEEGSRFSGKARETAGVLVEYCCSASSDRPTPRSFAVHSLVERLCFDLFISTFPTLFHRLFFQALATHGFTPKHPSFHSAVQNAAYLKQKFEGTGTGIDKKRFEDAYTVVLDLHVNYAGQPAKMGDLRSTILNPSKWNQSGELLFQEEV 650
[Close]
BLAST of Ec-00_002970.1 vs. uniprot
Match: D7FP26_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP26_ECTSI)

HSP 1 Score: 67.4 bits (163), Expect = 1.030e-11
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 3 
Query:  246 ELRSSARQDGRPPQDHPEPEQVEPVGGTALPGR 344
            ELRSSARQDGRPPQDHPEPEQVEPVGGTALPGR
Sbjct:   12 ELRSSARQDGRPPQDHPEPEQVEPVGGTALPGR 44
The following BLAST results are available for this feature:
BLAST of Ec-00_002970.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G6N6_ECTSI4.240e-7299.14Protein kinase domain-containing protein n=2 Tax=E... [more]
D7FZ99_ECTSI1.930e-70100.00Kinase, CAMK CAMKL n=2 Tax=Ectocarpus siliculosus ... [more]
A0A6H5JGU0_9PHAE1.280e-5765.48Protein kinase domain-containing protein n=1 Tax=E... [more]
D7FP26_ECTSI1.030e-11100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:3112876..3114605 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score233.8
Seed ortholog evalue4.1e-59
Seed eggNOG ortholog2880.D7FTL0
Length351
Hectar predicted targeting categoryother localisation
Gene idEc-00_002970.1
EggNOG free text desc.Protein tyrosine kinase
EggNOG OGs2E7K5@1,2SE5P@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_002970Ec-00_002970Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 3112876..3114605 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002970.1.1Ec-00_002970.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3112876..3112965 +
Ec-00_002970.1.2Ec-00_002970.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3113218..3113370 +
Ec-00_002970.1.3Ec-00_002970.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3114498..3114605 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002970.1CDS:Ec-00_002970.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 3112876..3112965 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002970.1Ec-00_002970.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 3112876..3114605 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_002970.1 ID=Ec-00_002970.1|Name=Ec-00_002970.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=117bp
MLQPSLDTFSLGVMMLQVLFVEEGSRFSGKALATHGFTPKHPSFHSAVQN
AAYLKQKFEATGTGIDKERFEDASTVVLDLHVNYAAQPAKMGDLRRTILN
PSKWNQSGELLFQEEV*
back to top

spliced messenger RNA

>Ec-00_002970.1 ID=Ec-00_002970.1|Name=Ec-00_002970.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=351bp|location=Sequence derived from alignment at chr_00:3112876..3114605+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGCAGCCCTCCCTCGACACCTTCTCGTTGGGAGTGATGATGCTTCA
GGTCCTCTTCGTCGAGGAGGGGTCGCGGTTCAGTGGCAAGGCTCTGGCTA
CGCATGGCTTCACCCCCAAGCACCCGAGCTTCCACTCAGCCGTCCAGAAC
GCCGCCTACCTGAAGCAGAAGTTCGAAGCAACGGGAACTGGTATCGACAA
GGAGCGGTTCGAGGATGCTAGCACCGTCGTGCTCGACCTGCACGTGAACT
ACGCAGCTCAGCCCGCCAAGATGGGAGACCTCCGCAGGACCATCCTGAAC
CCGAGCAAGTGGAACCAGTCGGGGGAACTGCTCTTCCAGGAAGAGGTGTG
A
back to top

protein sequence of Ec-00_002970.1

>Ec-00_002970.1 ID=Ec-00_002970.1|Name=Ec-00_002970.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=117bp
MLQPSLDTFSLGVMMLQVLFVEEGSRFSGKALATHGFTPKHPSFHSAVQN
AAYLKQKFEATGTGIDKERFEDASTVVLDLHVNYAAQPAKMGDLRRTILN
PSKWNQSGELLFQEEV*
back to top

mRNA from alignment at chr_00:3112876..3114605+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_002970.1 ID=Ec-00_002970.1|Name=Ec-00_002970.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1730bp|location=Sequence derived from alignment at chr_00:3112876..3114605+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCTGCAGCCCTCCCTCGACACCTTCTCGTTGGGAGTGATGATGCTTCA
GGTCCTCTTCGTCGAGGAGGGGTCGCGGTTCAGTGGCAAGGCGAGAGAAA
CGACGGGCGTGCTCGTCGAATATTGTTGCTCGTAGATATTGTTGTTGTTG
TTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTTCTCCTTCCGCTGCTGCT
TTGAACCAAAGTTAACAGCATTAGTGCTAGCTCTGACCGCCGTCCACTAC
GAAGTTTTGTTGCAGGTTCGTTGGTGGAGAGGGTACGCTTCGATGTTTTC
ATCTTCACGTTTCCGGCCCTCTTCCACCCTCGATTCTTCCAGGCTCTGGC
TACGCATGGCTTCACCCCCAAGCACCCGAGCTTCCACTCAGCCGTCCAGA
ACGCCGCCTACCTGAAGCAGAAGTTCGAAGCAACGGGAACTGGTATCGAC
AAGGAGCGGTTCGAGGATGCTAGCACCGTCGTGCTCGACCTGCACGTGAG
TCGCACAACCTACAGCCATAGCTGTCAAATCCCCGTCGTTTGGGAGATCT
CCACGTTTTCGGTGTTCTGTTGCAGAGGCACCGCTTCCCGGTGCATCGTC
CCCTACCAAAGCGGCTACATACCAGTAGTCTATTGTGGTCGCCGATGAGG
GGAGAGAGTTGTCCACGCCCTTTGTCGACGAGTGTCTGTCGGCCACACGT
CTTGATTTGTGCCTCGTGCTTCGATGCGCCTGCTCCCGATCAAGATCTAA
ATGTATACTTATCATCCTTTGCAGGTCTGCCCTTGAAACATGGACCATTA
TTAGGGGCAAGGGGGCGGGTCGGCGGCACACTTCTAGCACCTTGTGTTCA
CGCCACCTGCCTTCCCAACTGTCTGTGCCACATGGACTCTCTCTGTAGAA
GACCCACGCACAGTACTGCTGTAGGAGGCAATGAATGTCTTCGGCACGCC
CGTTCTGTTTCTACCAAAATTCGCTTCGCCAACATCCTCAAAGACAATCG
CATGAAACACTGAAGCAACACAATTTGTTTTTTTGTTTTGTTTTTGTTTT
TGTTTTCTTCACTTCACATCAGCGCTCACAGCACTAGTGCCGTTTACTCC
AACCCGTGGTCGCACAGAAGAGCCCCTCTCTACCCTCCCCTCCTGCGGTA
CTTTGCCTTCGATTTTTAATGCGAGAAGAGCTCAGCAATCTCTTCCCTCT
GTGTACACACGAACTAGCGCTATCCACTAGACCAGGAGCAGAAGCGAGAG
AAAAACTCACTTTGCAAGAAAAGCTCGCTTACGCCGGGATTCGAACGCCT
GACCTGACCTCTAGAAGGTTTCGGGGATACCAACTAGACCACCGGGGCGA
CCGGCATGCGTCTGTATGTAACGATCCTTCATCACCCGGCACACCAGCAC
CCTCTCGTTTGTGCCATGCCCGCGTCTACAATACTGATGTGATATTTGCA
AGGACAGCGAAACTCCCCCGCCCCTGTCGAGAACTACAGTACTGTATTCA
TCATACAAGGACACTTGGCTGACGTTTGGCTCAAAAGATCCGAGTAGAAC
CCAAGAAACGCAGGACTTGACACCTCAAGTATTTCCATGTCATGACAACG
CGCATGGCATCCATCCGCTCAGGTGAACTACGCAGCTCAGCCCGCCAAGA
TGGGAGACCTCCGCAGGACCATCCTGAACCCGAGCAAGTGGAACCAGTCG
GGGGAACTGCTCTTCCAGGAAGAGGTGTGA
back to top

Coding sequence (CDS) from alignment at chr_00:3112876..3114605+

>Ec-00_002970.1 ID=Ec-00_002970.1|Name=Ec-00_002970.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=351bp|location=Sequence derived from alignment at chr_00:3112876..3114605+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCTGCAGCCCTCCCTCGACACCTTCTCGTTGGGAGTGATGATGCTTCA
GGTCCTCTTCGTCGAGGAGGGGTCGCGGTTCAGTGGCAAGGCTCTGGCTA
CGCATGGCTTCACCCCCAAGCACCCGAGCTTCCACTCAGCCGTCCAGAAC
GCCGCCTACCTGAAGCAGAAGTTCGAAGCAACGGGAACTGGTATCGACAA
GGAGCGGTTCGAGGATGCTAGCACCGTCGTGCTCGACCTGCACGTGAACT
ACGCAGCTCAGCCCGCCAAGATGGGAGACCTCCGCAGGACCATCCTGAAC
CCGAGCAAGTGGAACCAGTCGGGGGAACTGCTCTTCCAGGAAGAGGTGTG
A
back to top
Synonyms
The feature 'Ec-00_002970.1' has the following synonyms
Synonym
Esi1784_0001
Esi_1784_0001