Ec-00_002950.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_002950.1
Unique NameEc-00_002950.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length167
Homology
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BLAST of Ec-00_002950.1 vs. uniprot
Match: D7FN74_ECTSI (MFS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN74_ECTSI)

HSP 1 Score: 330 bits (847), Expect = 1.330e-114
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 1 
Query:    1 MPETESHYQRAGYTQPMEDGGGDDDNSRETNQHQRRPDDHLSWFVLMLTVTSALGGFLFGYDTGVVSGAMLLIKQDFSLSDWQEEVIVSVTIVAAVTAAVAGGPAMERWGRRPVILLAAVVFTVGAVMLAAATSYSTLVGGRCARVCVHAEFWLGYTIGFGMQLKS 498
            MPETESHYQRAGYTQPMEDGGGDDDNSRETNQHQRRPDDHLSWFVLMLTVTSALGGFLFGYDTGVVSGAMLLIKQDFSLSDWQEEVIVSVTIVAAVTAAVAGGPAMERWGRRPVILLAAVVFTVGAVMLAAATSYSTLVGGRCARVCVHAEFWLGYTIGFGMQLKS
Sbjct:    1 MPETESHYQRAGYTQPMEDGGGDDDNSRETNQHQRRPDDHLSWFVLMLTVTSALGGFLFGYDTGVVSGAMLLIKQDFSLSDWQEEVIVSVTIVAAVTAAVAGGPAMERWGRRPVILLAAVVFTVGAVMLAAATSYSTLVGGRCARVCVHAEFWLGYTIGFGMQLKS 166
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BLAST of Ec-00_002950.1 vs. uniprot
Match: D8LLZ6_ECTSI (MFS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLZ6_ECTSI)

HSP 1 Score: 274 bits (700), Expect = 8.370e-87
Identity = 141/142 (99.30%), Postives = 141/142 (99.30%), Query Frame = 1 
Query:    1 MPETESHYQRAGYTQPMEDGGGDDDNSRETNQHQRRPDDHLSWFVLMLTVTSALGGFLFGYDTGVVSGAMLLIKQDFSLSDWQEEVIVSVTIVAAVTAAVAGGPAMERWGRRPVILLAAVVFTVGAVMLAAATSYSTLVGGR 426
            MPETESHYQRAGYTQPMEDGGGD DNSRETNQHQRRPDDHLSWFVLMLTVTSALGGFLFGYDTGVVSGAMLLIKQDFSLSDWQEEVIVSVTIVAAVTAAVAGGPAMERWGRRPVILLAAVVFTVGAVMLAAATSYSTLVGGR
Sbjct:    1 MPETESHYQRAGYTQPMEDGGGDXDNSRETNQHQRRPDDHLSWFVLMLTVTSALGGFLFGYDTGVVSGAMLLIKQDFSLSDWQEEVIVSVTIVAAVTAAVAGGPAMERWGRRPVILLAAVVFTVGAVMLAAATSYSTLVGGR 142
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BLAST of Ec-00_002950.1 vs. uniprot
Match: A0A7S2XVN3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVN3_9STRA)

HSP 1 Score: 115 bits (287), Expect = 1.800e-29
Identity = 56/127 (44.09%), Postives = 85/127 (66.93%), Query Frame = 1 
Query:  109 PDDHLSWFVLMLTVTSALGGFLFGYDTGVVSGAMLLIKQDFSLSDWQEEVIVSVTIVAAVTAAVAGGPAMERWGRRPVILLAAVVFTVGAVMLAAATSYSTLVGGRCARVCVHAEFWLGYTIGFGMQ 489
            P    ++ V +L V +A+GGFLFGYDTGV+SGAM++I++DF+L+DW++E++VS T++ AV   +AGGPA + WGRRP+I+ + ++F  GA  LA A  +  LV GR           +G+ +G   Q
Sbjct:   23 PQTPATFLVYVLAVMAAIGGFLFGYDTGVISGAMIVIREDFALNDWEQEIVVSSTVLTAVFGCLAGGPANQIWGRRPLIIFSCILFIFGAAALAWAPDFKWLVLGRLV---------VGFAVGLSSQ 140
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BLAST of Ec-00_002950.1 vs. uniprot
Match: A0A836CJI9_9STRA (Solute carrier family 2, member 13-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJI9_9STRA)

HSP 1 Score: 117 bits (294), Expect = 1.270e-27
Identity = 65/137 (47.45%), Postives = 88/137 (64.23%), Query Frame = 1 
Query:   40 TQPMEDGGGDDDNSRETNQHQ--------RRPDDHLSWFVLMLTVTSALGGFLFGYDTGVVSGAMLLIKQDFSLSDWQEEVIVSVTIVAAVTAAVAGGPAMERWGRRPVILLAAVVFTVGAVMLAAATSYSTLVGGR 426
            ++P+    G +DN   T+ H         +RP D  + +V++LT+ +A GGFLFGYDTGVVSGAML I+ +  LSD Q+E +VS TI AAV A+  GG A + +GRRPV+L AA  FT GA +L AA  +  L+ GR
Sbjct:   18 SRPLPFTDGSEDNVFSTSGHYQTGGHSPIKRPPDETTPYVIVLTLAAACGGFLFGYDTGVVSGAMLKIRAELGLSDVQQEAVVSATIAAAVVASALGGAASQAYGRRPVLLFAAATFTAGAALLGAAPGFGALLAGR 154
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BLAST of Ec-00_002950.1 vs. uniprot
Match: A0A2C9MAD4_BIOGL (MFS domain-containing protein n=1 Tax=Biomphalaria glabrata TaxID=6526 RepID=A0A2C9MAD4_BIOGL)

HSP 1 Score: 109 bits (272), Expect = 2.610e-27
Identity = 58/115 (50.43%), Postives = 81/115 (70.43%), Query Frame = 1 
Query:  130 FVLMLTVTSALGGFLFGYDTGVVSGAMLLIKQDFSLSDWQEEVIVSVTIVAAVTAAVAGGPAMERWGRRPVILLAAVVFTVGAVMLAAATSYSTLVGGRCARVCVHAEFWLGYTI 474
            F+ +LT  SALGGFLFGYDTGV+SGAM+L++ DFSLS   +E+IVSVTI AA   A+ GG   +R GRRPVI+ A+++FT+G++M+A A    +L+ GR     +   F +G  +
Sbjct:   44 FIYILTFFSALGGFLFGYDTGVISGAMILLRNDFSLSSVWQELIVSVTIAAAAVFALVGGFLNDRLGRRPVIMGASILFTLGSIMMAVAKDKFSLLAGRGVGAGIGEYFCVGVCV 158
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BLAST of Ec-00_002950.1 vs. uniprot
Match: A0A7S3YAN5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YAN5_HETAK)

HSP 1 Score: 110 bits (275), Expect = 2.810e-27
Identity = 54/99 (54.55%), Postives = 79/99 (79.80%), Query Frame = 1 
Query:  130 FVLMLTVTSALGGFLFGYDTGVVSGAMLLIKQDFSLSDWQEEVIVSVTIVAAVTAAVAGGPAMERWGRRPVILLAAVVFTVGAVMLAAATSYSTLVGGR 426
            F++ LT  +A+GGFLFGYDTGV+SGAM+LI+QDF+LS  Q+EV+VS+T+  A+  A  GG   ER GR+P ILL++++F +G+V+L+ ++SY+ LV GR
Sbjct:    4 FIVFLTGMAAIGGFLFGYDTGVISGAMILIRQDFNLSAEQQEVVVSITVTGAIFGACFGGLLTERRGRKPAILLSSLIFLLGSVLLSLSSSYNLLVFGR 102
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BLAST of Ec-00_002950.1 vs. uniprot
Match: A0A7S0CBZ0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CBZ0_9STRA)

HSP 1 Score: 107 bits (268), Expect = 2.840e-27
Identity = 56/95 (58.95%), Postives = 74/95 (77.89%), Query Frame = 1 
Query:  142 LTVTSALGGFLFGYDTGVVSGAMLLIKQDFSLSDWQEEVIVSVTIVAAVTAAVAGGPAMERWGRRPVILLAAVVFTVGAVMLAAATSYSTLVGGR 426
            LT  +A+GGFLFGYDTGV+SGAMLL+K DFSLSD QEE++V+ TIVAA   ++ GG     +GRR  IL A++VF VG+++L+ A SY+TL+ GR
Sbjct:    9 LTFIAAIGGFLFGYDTGVISGAMLLLKDDFSLSDSQEEIVVTSTIVAAFIFSLVGGSINNTFGRRISILFASIVFLVGSLILSLAWSYATLIAGR 103
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BLAST of Ec-00_002950.1 vs. uniprot
Match: UPI0018A75666 (proton myo-inositol cotransporter-like n=1 Tax=Penaeus monodon TaxID=6687 RepID=UPI0018A75666)

HSP 1 Score: 110 bits (274), Expect = 3.320e-27
Identity = 59/98 (60.20%), Postives = 76/98 (77.55%), Query Frame = 1 
Query:  133 VLMLTVTSALGGFLFGYDTGVVSGAMLLIKQDFSLSDWQEEVIVSVTIVAAVTAAVAGGPAMERWGRRPVILLAAVVFTVGAVMLAAATSYSTLVGGR 426
            +++L V SA+GGFLFGYDTGVVSGAM+L++ +F LS    E+IVS TI AA  AA+  GPA +R+GRRPVIL+A+VVFTVGAV++  A    TL+ GR
Sbjct:   36 IILLAVFSAIGGFLFGYDTGVVSGAMILVRDEFELSTLWHELIVSSTIGAAWLAALVAGPATDRFGRRPVILVASVVFTVGAVIMGVAPEKVTLLIGR 133
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BLAST of Ec-00_002950.1 vs. uniprot
Match: UPI000F669676 (proton myo-inositol cotransporter-like n=1 Tax=Penaeus vannamei TaxID=6689 RepID=UPI000F669676)

HSP 1 Score: 112 bits (281), Expect = 5.640e-27
Identity = 61/98 (62.24%), Postives = 78/98 (79.59%), Query Frame = 1 
Query:  133 VLMLTVTSALGGFLFGYDTGVVSGAMLLIKQDFSLSDWQEEVIVSVTIVAAVTAAVAGGPAMERWGRRPVILLAAVVFTVGAVMLAAATSYSTLVGGR 426
            +++L V SA+GGFLFGYDTGVVSGAM+L++ +F LS    E+IVS TI AA  AA+A GPA +R+GRRPVIL+A+VVFTVGAV++ AA    TL+ GR
Sbjct:   51 IILLAVFSAIGGFLFGYDTGVVSGAMILVRDEFELSTVWHELIVSSTIGAAWLAALAAGPATDRFGRRPVILVASVVFTVGAVVMGAAPEKVTLLIGR 148
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BLAST of Ec-00_002950.1 vs. uniprot
Match: B7FYT5_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FYT5_PHATC)

HSP 1 Score: 115 bits (289), Expect = 6.170e-27
Identity = 58/95 (61.05%), Postives = 76/95 (80.00%), Query Frame = 1 
Query:  142 LTVTSALGGFLFGYDTGVVSGAMLLIKQDFSLSDWQEEVIVSVTIVAAVTAAVAGGPAMERWGRRPVILLAAVVFTVGAVMLAAATSYSTLVGGR 426
            LT  +ALGGFLFGYDTGV+SGAML+I+++F L+ WQ+EV+VS T+++A  +++AGG     WGRRP ILLAA VFTVG+++L  A SY TLV GR
Sbjct:   86 LTTMAALGGFLFGYDTGVISGAMLMIRREFVLTPWQQEVVVSSTVLSAFFSSIAGGSLNRVWGRRPCILLAAAVFTVGSLVLGGAWSYRTLVLGR 180
The following BLAST results are available for this feature:
BLAST of Ec-00_002950.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FN74_ECTSI1.330e-114100.00MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LLZ6_ECTSI8.370e-8799.30MFS domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S2XVN3_9STRA1.800e-2944.09Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A836CJI9_9STRA1.270e-2747.45Solute carrier family 2, member 13-like protein n=... [more]
A0A2C9MAD4_BIOGL2.610e-2750.43MFS domain-containing protein n=1 Tax=Biomphalaria... [more]
A0A7S3YAN5_HETAK2.810e-2754.55Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S0CBZ0_9STRA2.840e-2758.95Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]
UPI0018A756663.320e-2760.20proton myo-inositol cotransporter-like n=1 Tax=Pen... [more]
UPI000F6696765.640e-2762.24proton myo-inositol cotransporter-like n=1 Tax=Pen... [more]
B7FYT5_PHATC6.170e-2761.05Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:3097552..3098052 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score329.3
Seed ortholog evalue1e-87
Seed eggNOG ortholog2880.D7FN74
Preferred nameSLC2A13
Length501
KEGG koko:K08150
KEGG TC2.A.1.1.25,2.A.1.1.62,2.A.1.1.63,2.A.1.1.66,2.A.1.8
Hectar predicted targeting categoryother localisation
Gene idEc-00_002950.1
GOsGO:0000325,GO:0003674,GO:0005215,GO:0005351,GO:0005355,GO:0005365,GO:0005366,GO:0005402,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008324,GO:0008643,GO:0008645,GO:0009705,GO:0009925,GO:0015075,GO:0015077,GO:0015078,GO:0015144,GO:0015145,GO:0015149,GO:0015166,GO:0015291,GO:0015293,GO:0015294,GO:0015295,GO:0015318,GO:0015672,GO:0015749,GO:0015791,GO:0015798,GO:0015850,GO:0016020,GO:0016021,GO:0016323,GO:0016324,GO:0022804,GO:0022857,GO:0022890,GO:0023052,GO:0031090,GO:0031224,GO:0031226,GO:0034219,GO:0034220,GO:0042995,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044437,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0045177,GO:0045178,GO:0046323,GO:0051119,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071944,GO:0090406,GO:0098588,GO:0098590,GO:0098655,GO:0098660,GO:0098662,GO:0098805,GO:0120025,GO:1901618,GO:1902600,GO:1904659
EggNOG free text desc.glucose import
EggNOG OGsKOG0254@1,KOG0254@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_002950Ec-00_002950Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 3097552..3098052 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002950.1.1Ec-00_002950.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3097552..3098052 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002950.1CDS:Ec-00_002950.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 3097552..3098052 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002950.1Ec-00_002950.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 3097552..3098052 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_002950.1 ID=Ec-00_002950.1|Name=Ec-00_002950.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=167bp
MPETESHYQRAGYTQPMEDGGGDDDNSRETNQHQRRPDDHLSWFVLMLTV
TSALGGFLFGYDTGVVSGAMLLIKQDFSLSDWQEEVIVSVTIVAAVTAAV
AGGPAMERWGRRPVILLAAVVFTVGAVMLAAATSYSTLVGGRCARVCVHA
EFWLGYTIGFGMQLKS*
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spliced messenger RNA

>Ec-00_002950.1 ID=Ec-00_002950.1|Name=Ec-00_002950.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=501bp|location=Sequence derived from alignment at chr_00:3097552..3098052- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGGAGACGGAGAGTCACTACCAGCGCGCAGGTTACACCCAGCCAAT
GGAGGATGGAGGTGGCGATGACGACAACAGCCGAGAAACCAACCAACACC
AACGGCGCCCCGATGACCACCTCTCCTGGTTTGTTCTGATGCTGACCGTC
ACCTCCGCGCTAGGCGGGTTCCTGTTCGGCTACGACACGGGTGTGGTGTC
GGGCGCGATGCTCCTGATCAAGCAGGACTTCAGCCTGAGCGACTGGCAGG
AGGAGGTGATCGTGAGCGTGACCATCGTGGCGGCGGTGACAGCCGCGGTG
GCCGGCGGCCCGGCGATGGAGCGGTGGGGGCGGCGCCCGGTCATCCTGCT
GGCGGCGGTCGTCTTCACGGTCGGGGCGGTGATGCTCGCCGCGGCGACGT
CGTACAGCACCTTGGTGGGCGGCAGGTGCGCTCGTGTTTGTGTCCACGCT
GAATTTTGGCTTGGGTATACAATTGGCTTCGGCATGCAACTGAAAAGCTA
G
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protein sequence of Ec-00_002950.1

>Ec-00_002950.1 ID=Ec-00_002950.1|Name=Ec-00_002950.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=167bp
MPETESHYQRAGYTQPMEDGGGDDDNSRETNQHQRRPDDHLSWFVLMLTV
TSALGGFLFGYDTGVVSGAMLLIKQDFSLSDWQEEVIVSVTIVAAVTAAV
AGGPAMERWGRRPVILLAAVVFTVGAVMLAAATSYSTLVGGRCARVCVHA
EFWLGYTIGFGMQLKS*
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mRNA from alignment at chr_00:3097552..3098052-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_002950.1 ID=Ec-00_002950.1|Name=Ec-00_002950.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=501bp|location=Sequence derived from alignment at chr_00:3097552..3098052- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCCGGAGACGGAGAGTCACTACCAGCGCGCAGGTTACACCCAGCCAAT
GGAGGATGGAGGTGGCGATGACGACAACAGCCGAGAAACCAACCAACACC
AACGGCGCCCCGATGACCACCTCTCCTGGTTTGTTCTGATGCTGACCGTC
ACCTCCGCGCTAGGCGGGTTCCTGTTCGGCTACGACACGGGTGTGGTGTC
GGGCGCGATGCTCCTGATCAAGCAGGACTTCAGCCTGAGCGACTGGCAGG
AGGAGGTGATCGTGAGCGTGACCATCGTGGCGGCGGTGACAGCCGCGGTG
GCCGGCGGCCCGGCGATGGAGCGGTGGGGGCGGCGCCCGGTCATCCTGCT
GGCGGCGGTCGTCTTCACGGTCGGGGCGGTGATGCTCGCCGCGGCGACGT
CGTACAGCACCTTGGTGGGCGGCAGGTGCGCTCGTGTTTGTGTCCACGCT
GAATTTTGGCTTGGGTATACAATTGGCTTCGGCATGCAACTGAAAAGCTA
G
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Coding sequence (CDS) from alignment at chr_00:3097552..3098052-

>Ec-00_002950.1 ID=Ec-00_002950.1|Name=Ec-00_002950.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=501bp|location=Sequence derived from alignment at chr_00:3097552..3098052- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCCGGAGACGGAGAGTCACTACCAGCGCGCAGGTTACACCCAGCCAAT
GGAGGATGGAGGTGGCGATGACGACAACAGCCGAGAAACCAACCAACACC
AACGGCGCCCCGATGACCACCTCTCCTGGTTTGTTCTGATGCTGACCGTC
ACCTCCGCGCTAGGCGGGTTCCTGTTCGGCTACGACACGGGTGTGGTGTC
GGGCGCGATGCTCCTGATCAAGCAGGACTTCAGCCTGAGCGACTGGCAGG
AGGAGGTGATCGTGAGCGTGACCATCGTGGCGGCGGTGACAGCCGCGGTG
GCCGGCGGCCCGGCGATGGAGCGGTGGGGGCGGCGCCCGGTCATCCTGCT
GGCGGCGGTCGTCTTCACGGTCGGGGCGGTGATGCTCGCCGCGGCGACGT
CGTACAGCACCTTGGTGGGCGGCAGGTGCGCTCGTGTTTGTGTCCACGCT
GAATTTTGGCTTGGGTATACAATTGGCTTCGGCATGCAACTGAAAAGCTA
G
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Synonyms
The feature 'Ec-00_002950.1' has the following synonyms
Synonym
Esi1767_0001
Esi_1767_0001