Ec-00_002940.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_002940.1
Unique NameEc-00_002940.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length64
Homology
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BLAST of Ec-00_002940.1 vs. uniprot
Match: D7FN73_ECTSI (AMP-binding enzyme family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN73_ECTSI)

HSP 1 Score: 130 bits (327), Expect = 1.480e-38
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 1 
Query:    1 METLRFGKSLMSLGFAPHRSINIIGFNSAEWFIANMGAIAAGGIAAGIYTSNLPEGGIRHAPN 189
            METLRFGKSLMSLGFAPHRSINIIGFNSAEWFIANMGAIAAGGIAAGIYTSNLPEGGIRHAPN
Sbjct:    1 METLRFGKSLMSLGFAPHRSINIIGFNSAEWFIANMGAIAAGGIAAGIYTSNLPEGGIRHAPN 63
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BLAST of Ec-00_002940.1 vs. uniprot
Match: A0A6H5KWQ0_9PHAE (AMP-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWQ0_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 2.450e-26
Identity = 53/55 (96.36%), Postives = 53/55 (96.36%), Query Frame = 1 
Query:    1 METLRFGKSLMSLGFAPHRSINIIGFNSAEWFIANMGAIAAGGIAAGIYTSNLPE 165
            METLRFGKSLMSLGFAPHRSINIIGFNS EWFIANMGAIAAGGI AGIYTSNLPE
Sbjct:   74 METLRFGKSLMSLGFAPHRSINIIGFNSTEWFIANMGAIAAGGIPAGIYTSNLPE 128
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BLAST of Ec-00_002940.1 vs. uniprot
Match: D7G3T1_ECTSI (Long chain acyl-coA synthetase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3T1_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 7.640e-25
Identity = 50/55 (90.91%), Postives = 52/55 (94.55%), Query Frame = 1 
Query:    1 METLRFGKSLMSLGFAPHRSINIIGFNSAEWFIANMGAIAAGGIAAGIYTSNLPE 165
            METLRFGKSL+SL FAPHR +NIIGFNS EWFIANMGAIAAGGIAAGIYTSNLPE
Sbjct:   74 METLRFGKSLLSLDFAPHRCVNIIGFNSTEWFIANMGAIAAGGIAAGIYTSNLPE 128
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BLAST of Ec-00_002940.1 vs. uniprot
Match: A0A835Z6J1_9STRA (Long chain acyl-CoA synthetase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6J1_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 2.250e-20
Identity = 41/54 (75.93%), Postives = 48/54 (88.89%), Query Frame = 1 
Query:    4 ETLRFGKSLMSLGFAPHRSINIIGFNSAEWFIANMGAIAAGGIAAGIYTSNLPE 165
            E+++F K+LMSLGFAPHR +NIIGFNS EWF+A MG I AGGIAAGIYT+NLPE
Sbjct:   71 ESVKFAKTLMSLGFAPHRCVNIIGFNSVEWFVAEMGCILAGGIAAGIYTTNLPE 124
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BLAST of Ec-00_002940.1 vs. uniprot
Match: A0A7S2K6B1_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K6B1_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 7.450e-17
Identity = 39/54 (72.22%), Postives = 42/54 (77.78%), Query Frame = 1 
Query:    4 ETLRFGKSLMSLGFAPHRSINIIGFNSAEWFIANMGAIAAGGIAAGIYTSNLPE 165
            +   F KSL+SLGF  H  INIIGFNS EWF AN G IAAGGIAAGIYT+NLPE
Sbjct:   74 QVFSFAKSLISLGFEKHDCINIIGFNSPEWFFANFGTIAAGGIAAGIYTTNLPE 127
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BLAST of Ec-00_002940.1 vs. uniprot
Match: A0A7S2H745_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2H745_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 4.380e-16
Identity = 35/50 (70.00%), Postives = 42/50 (84.00%), Query Frame = 1 
Query:   16 FGKSLMSLGFAPHRSINIIGFNSAEWFIANMGAIAAGGIAAGIYTSNLPE 165
            F KSL+S+GF    ++NIIGFNS EWF +N GAIAAGGIAAGIYT+NLP+
Sbjct:    6 FAKSLLSIGFERFDAVNIIGFNSPEWFFSNFGAIAAGGIAAGIYTTNLPD 55
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BLAST of Ec-00_002940.1 vs. uniprot
Match: A0A8J9T1U7_PHATR (Hypothetical protein (Fragment) n=1 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9T1U7_PHATR)

HSP 1 Score: 75.1 bits (183), Expect = 1.840e-15
Identity = 34/50 (68.00%), Postives = 41/50 (82.00%), Query Frame = 1 
Query:   16 FGKSLMSLGFAPHRSINIIGFNSAEWFIANMGAIAAGGIAAGIYTSNLPE 165
            FGK+L+ +GFA   +INIIGFN+ EWF AN GAIAAGGI AG+YT+N PE
Sbjct:   24 FGKALLKVGFARFDTINIIGFNAPEWFFANFGAIAAGGIPAGVYTTNNPE 73
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BLAST of Ec-00_002940.1 vs. uniprot
Match: A0A4D9DBU9_9STRA (AMP-binding domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DBU9_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 8.000e-15
Identity = 36/50 (72.00%), Postives = 41/50 (82.00%), Query Frame = 1 
Query:    7 TLRFGKSLMSLGFAPHRSINIIGFNSAEWFIANMGAIAAGGIAAGIYTSN 156
            TL+F KSL+SLGF  H +IN+IGFNS EW IAN GAIAAGG+  GIYTSN
Sbjct:   75 TLKFCKSLLSLGFPAHGAINLIGFNSPEWLIANCGAIAAGGVGVGIYTSN 124
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BLAST of Ec-00_002940.1 vs. uniprot
Match: B7FXX6_PHATC (Long chain acyl-coa synthetase n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FXX6_PHATC)

HSP 1 Score: 75.1 bits (183), Expect = 2.790e-14
Identity = 34/50 (68.00%), Postives = 41/50 (82.00%), Query Frame = 1 
Query:   16 FGKSLMSLGFAPHRSINIIGFNSAEWFIANMGAIAAGGIAAGIYTSNLPE 165
            FGK+L+ +GFA   +INIIGFN+ EWF AN GAIAAGGI AG+YT+N PE
Sbjct:   80 FGKALLKVGFARFDTINIIGFNAPEWFFANFGAIAAGGIPAGVYTTNNPE 129
[Close]
BLAST of Ec-00_002940.1 vs. uniprot
Match: A0A1Z5J6E1_FISSO (Long-chain-fatty-acid--CoA ligase ACSBG n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J6E1_FISSO)

HSP 1 Score: 75.1 bits (183), Expect = 2.790e-14
Identity = 33/50 (66.00%), Postives = 42/50 (84.00%), Query Frame = 1 
Query:   16 FGKSLMSLGFAPHRSINIIGFNSAEWFIANMGAIAAGGIAAGIYTSNLPE 165
            FGK+L+S+GF    ++NIIGFNS EWFI N GA+AAGG+A+GIYT+N PE
Sbjct:   79 FGKALLSIGFERFDTVNIIGFNSPEWFICNFGAMAAGGVASGIYTTNGPE 128
The following BLAST results are available for this feature:
BLAST of Ec-00_002940.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FN73_ECTSI1.480e-38100.00AMP-binding enzyme family protein n=1 Tax=Ectocarp... [more]
A0A6H5KWQ0_9PHAE2.450e-2696.36AMP-binding domain-containing protein n=1 Tax=Ecto... [more]
D7G3T1_ECTSI7.640e-2590.91Long chain acyl-coA synthetase n=1 Tax=Ectocarpus ... [more]
A0A835Z6J1_9STRA2.250e-2075.93Long chain acyl-CoA synthetase n=1 Tax=Tribonema m... [more]
A0A7S2K6B1_9STRA7.450e-1772.22Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S2H745_9STRA4.380e-1670.00Hypothetical protein (Fragment) n=1 Tax=Helicothec... [more]
A0A8J9T1U7_PHATR1.840e-1568.00Hypothetical protein (Fragment) n=1 Tax=Phaeodacty... [more]
A0A4D9DBU9_9STRA8.000e-1572.00AMP-binding domain-containing protein n=3 Tax=Mono... [more]
B7FXX6_PHATC2.790e-1468.00Long chain acyl-coa synthetase n=3 Tax=Phaeodactyl... [more]
A0A1Z5J6E1_FISSO2.790e-1466.00Long-chain-fatty-acid--CoA ligase ACSBG n=2 Tax=Fi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:3076159..3076909 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score74.7
Seed ortholog evalue1.7e-11
Seed eggNOG ortholog2850.Phatr45510
Preferred nameACSBG1
Length192
KEGG rclassRC00004,RC00014
KEGG koko:K01304,ko:K15013
KEGG ReactionR01280
KEGG Pathwayko00061,ko00071,ko01100,ko01212,ko03320,ko04920,map00061,map00071,map01100,map01212,map03320,map04920
KEGG ModuleM00086
Hectar predicted targeting categoryother localisation
Gene idEc-00_002940.1
GOsGO:0000003,GO:0000038,GO:0001552,GO:0001676,GO:0003006,GO:0003674,GO:0003824,GO:0004467,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005783,GO:0005829,GO:0006082,GO:0006139,GO:0006163,GO:0006164,GO:0006629,GO:0006631,GO:0006633,GO:0006635,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0007272,GO:0007275,GO:0007399,GO:0007498,GO:0007548,GO:0008150,GO:0008152,GO:0008366,GO:0008406,GO:0008585,GO:0008610,GO:0009056,GO:0009058,GO:0009062,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009719,GO:0009725,GO:0009888,GO:0009987,GO:0010033,GO:0012505,GO:0014070,GO:0015645,GO:0016020,GO:0016042,GO:0016053,GO:0016054,GO:0016289,GO:0016405,GO:0016787,GO:0016788,GO:0016790,GO:0016874,GO:0016877,GO:0016878,GO:0018130,GO:0019395,GO:0019438,GO:0019637,GO:0019693,GO:0019725,GO:0019752,GO:0022414,GO:0030258,GO:0031957,GO:0031960,GO:0032501,GO:0032502,GO:0032787,GO:0033554,GO:0033865,GO:0033866,GO:0033875,GO:0033993,GO:0034030,GO:0034032,GO:0034033,GO:0034440,GO:0034641,GO:0034654,GO:0034976,GO:0035336,GO:0035337,GO:0035338,GO:0035383,GO:0035384,GO:0042221,GO:0042552,GO:0042592,GO:0042749,GO:0042752,GO:0042753,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044249,GO:0044255,GO:0044271,GO:0044272,GO:0044281,GO:0044282,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0045137,GO:0045187,GO:0045938,GO:0046390,GO:0046394,GO:0046395,GO:0046483,GO:0046545,GO:0046660,GO:0046949,GO:0047617,GO:0048513,GO:0048518,GO:0048520,GO:0048545,GO:0048608,GO:0048731,GO:0048856,GO:0048878,GO:0050789,GO:0050795,GO:0050896,GO:0051186,GO:0051188,GO:0051239,GO:0051240,GO:0051384,GO:0051716,GO:0055086,GO:0055088,GO:0055090,GO:0055114,GO:0060249,GO:0061458,GO:0065007,GO:0065008,GO:0070050,GO:0070328,GO:0071616,GO:0071704,GO:0072329,GO:0072330,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901568,GO:1901570,GO:1901575,GO:1901576
EggNOG free text desc.decanoate-CoA ligase activity
EggNOG OGsCOG1022@1,KOG1256@2759
EC3.4.19.3,6.2.1.3
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko01004
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_002940Ec-00_002940Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 3076159..3076909 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002940.1.1Ec-00_002940.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3076159..3076172 +
Ec-00_002940.1.2Ec-00_002940.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3076467..3076617 +
Ec-00_002940.1.3Ec-00_002940.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3076883..3076909 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002940.1CDS:Ec-00_002940.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 3076159..3076172 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002940.1Ec-00_002940.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 3076159..3076909 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_002940.1 ID=Ec-00_002940.1|Name=Ec-00_002940.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=64bp
METLRFGKSLMSLGFAPHRSINIIGFNSAEWFIANMGAIAAGGIAAGIYT
SNLPEGGIRHAPN*
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spliced messenger RNA

>Ec-00_002940.1 ID=Ec-00_002940.1|Name=Ec-00_002940.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=192bp|location=Sequence derived from alignment at chr_00:3076159..3076909+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGACGCTCAGGTTCGGCAAGAGTCTCATGTCGTTGGGCTTCGCGCC
ACACCGGTCGATCAACATCATCGGCTTCAACTCGGCCGAGTGGTTCATCG
CCAACATGGGAGCCATTGCGGCGGGAGGGATCGCTGCCGGCATCTACACC
TCCAACCTCCCGGAGGGCGGAATACGACATGCTCCAAACTAA
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protein sequence of Ec-00_002940.1

>Ec-00_002940.1 ID=Ec-00_002940.1|Name=Ec-00_002940.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=64bp
METLRFGKSLMSLGFAPHRSINIIGFNSAEWFIANMGAIAAGGIAAGIYT
SNLPEGGIRHAPN*
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mRNA from alignment at chr_00:3076159..3076909+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_002940.1 ID=Ec-00_002940.1|Name=Ec-00_002940.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=751bp|location=Sequence derived from alignment at chr_00:3076159..3076909+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGAGACGCTCAGGTGGGGGCGACGGCATTCAGGGTGGACATCTGTCCT
TGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGGTTTTGTTCTTA
TGCTGTTACGGTATGATGCGTGGTGTCGTTGCTGCTGCTGCTGCTACTGC
TGGTCACAGTGGTGGCGGTGCTGCTGCTGTAGTACTGTTGCTGATGTTGT
ATTCGCGTTAGCACATGCCTGCCGTCCTTTGAAAGGCATCTGCGATTCAT
TCTGATGTGAAGTTTTTTTTTATTATTATTATTATTATTTATTTTTGCTG
TATGGTAGGTTCGGCAAGAGTCTCATGTCGTTGGGCTTCGCGCCACACCG
GTCGATCAACATCATCGGCTTCAACTCGGCCGAGTGGTTCATCGCCAACA
TGGGAGCCATTGCGGCGGGAGGGATCGCTGCCGGCATCTACACCTCCAAC
CTCCCGGAGGTAAGCTTCTCTTGATGTTGTTGCTGCTGTTGCTGTTGCTG
TTGCTGCAGCTGCTGCTGGTGATGATGGTGATGCTGCTGTTGTTGTTGTT
GTTGCTGCTGCCTGGTGATGATAATGATGATTTTGGTGGTGTTGTAGATG
TTATTTCCTCTGCCCATTGGATGATGATGCACCTGGTGATGATGATGATG
ATGTTGGTGGTGTTGTTGCTGTTATTTCCTCTGCTGATGGATGATGACAC
CCTTGCGATGCTTGATGCGTGAAGGGCGGAATACGACATGCTCCAAACTA
A
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Coding sequence (CDS) from alignment at chr_00:3076159..3076909+

>Ec-00_002940.1 ID=Ec-00_002940.1|Name=Ec-00_002940.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=192bp|location=Sequence derived from alignment at chr_00:3076159..3076909+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGAGACGCTCAGGTTCGGCAAGAGTCTCATGTCGTTGGGCTTCGCGCC
ACACCGGTCGATCAACATCATCGGCTTCAACTCGGCCGAGTGGTTCATCG
CCAACATGGGAGCCATTGCGGCGGGAGGGATCGCTGCCGGCATCTACACC
TCCAACCTCCCGGAGGGCGGAATACGACATGCTCCAAACTAA
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Synonyms
The feature 'Ec-00_002940.1' has the following synonyms
Synonym
Esi1752_0001
Esi_1752_0001