Ec-00_002900.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_002900.1
Unique NameEc-00_002900.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length80
Homology
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BLAST of Ec-00_002900.1 vs. uniprot
Match: D7FN38_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN38_ECTSI)

HSP 1 Score: 128 bits (322), Expect = 2.620e-37
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 1 
Query:    1 MLPGGGVLSISKPSVLVGRETCMXXXXXXXXXXXXXFSSGASLAVVAIDAVEKRRRWAGGMIGEQQREKKTREQPLWHG 237
            MLPGGGVLSISKPSVLVGRETCMXXXXXXXXXXXXXFSSGASLAVVAIDAVEKRRRWAGGMIGEQQREKKTREQPLWHG
Sbjct:    1 MLPGGGVLSISKPSVLVGRETCMXXXXXXXXXXXXXFSSGASLAVVAIDAVEKRRRWAGGMIGEQQREKKTREQPLWHG 79
The following BLAST results are available for this feature:
BLAST of Ec-00_002900.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FN38_ECTSI2.620e-37100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:3047592..3047831 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length240
Hectar predicted targeting categoryother localisation
Gene idEc-00_002900.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_002900Ec-00_002900Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 3047592..3047831 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002900.1.1Ec-00_002900.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3047592..3047831 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002900.1CDS:Ec-00_002900.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 3047592..3047831 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002900.1Ec-00_002900.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 3047592..3047831 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_002900.1 ID=Ec-00_002900.1|Name=Ec-00_002900.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=80bp
MLPGGGVLSISKPSVLVGRETCMLPGGRVVSTSKPSFSSGASLAVVAIDA
VEKRRRWAGGMIGEQQREKKTREQPLWHG*
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spliced messenger RNA

>Ec-00_002900.1 ID=Ec-00_002900.1|Name=Ec-00_002900.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=240bp|location=Sequence derived from alignment at chr_00:3047592..3047831- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTACCGGGAGGAGGCGTTTTAAGCATCTCGAAGCCGTCGGTTCTCGT
CGGGAGGGAGACTTGCATGCTACCAGGAGGACGCGTGGTGAGCACCTCGA
AGCCGTCGTTCTCATCGGGAGCGAGTCTTGCTGTGGTGGCGATTGATGCT
GTGGAGAAACGGCGACGTTGGGCGGGAGGGATGATTGGTGAACAACAGAG
AGAGAAGAAAACCAGAGAACAACCCTTATGGCATGGATGA
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protein sequence of Ec-00_002900.1

>Ec-00_002900.1 ID=Ec-00_002900.1|Name=Ec-00_002900.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=80bp
MLPGGGVLSISKPSVLVGRETCMLPGGRVVSTSKPSFSSGASLAVVAIDA
VEKRRRWAGGMIGEQQREKKTREQPLWHG*
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mRNA from alignment at chr_00:3047592..3047831-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_002900.1 ID=Ec-00_002900.1|Name=Ec-00_002900.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=240bp|location=Sequence derived from alignment at chr_00:3047592..3047831- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCTACCGGGAGGAGGCGTTTTAAGCATCTCGAAGCCGTCGGTTCTCGT
CGGGAGGGAGACTTGCATGCTACCAGGAGGACGCGTGGTGAGCACCTCGA
AGCCGTCGTTCTCATCGGGAGCGAGTCTTGCTGTGGTGGCGATTGATGCT
GTGGAGAAACGGCGACGTTGGGCGGGAGGGATGATTGGTGAACAACAGAG
AGAGAAGAAAACCAGAGAACAACCCTTATGGCATGGATGA
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Coding sequence (CDS) from alignment at chr_00:3047592..3047831-

>Ec-00_002900.1 ID=Ec-00_002900.1|Name=Ec-00_002900.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=240bp|location=Sequence derived from alignment at chr_00:3047592..3047831- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCTACCGGGAGGAGGCGTTTTAAGCATCTCGAAGCCGTCGGTTCTCGT
CGGGAGGGAGACTTGCATGCTACCAGGAGGACGCGTGGTGAGCACCTCGA
AGCCGTCGTTCTCATCGGGAGCGAGTCTTGCTGTGGTGGCGATTGATGCT
GTGGAGAAACGGCGACGTTGGGCGGGAGGGATGATTGGTGAACAACAGAG
AGAGAAGAAAACCAGAGAACAACCCTTATGGCATGGATGA
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Synonyms
The feature 'Ec-00_002900.1' has the following synonyms
Synonym
Esi1738_0001
Esi_1738_0001