Ec-00_002890.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_002890.1
Unique NameEc-00_002890.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length50
Homology
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BLAST of Ec-00_002890.1 vs. uniprot
Match: D7FN37_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN37_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 1.100e-25
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 1 
Query:    1 MADLRREATSGSRFFKARMVEAAGPSTLATLGPIVKLLLDGDNDEDGAR 147
            MADLRREATSGSRFFKARMVEAAGPSTLATLGPIVKLLLDGDNDEDGAR
Sbjct:    1 MADLRREATSGSRFFKARMVEAAGPSTLATLGPIVKLLLDGDNDEDGAR 49
[Close]
BLAST of Ec-00_002890.1 vs. uniprot
Match: D7G7I0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7I0_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 1.720e-18
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = -2 
Query:    9 YRAPSSSLSPSRSNLTIGPRVASVDGPAASTIRALKNREPEVASLRR 149
            YRAPSSSLSPSRSNLTIGPRVASVDGPAASTIRALKNREPEVASLRR
Sbjct: 2134 YRAPSSSLSPSRSNLTIGPRVASVDGPAASTIRALKNREPEVASLRR 2180
The following BLAST results are available for this feature:
BLAST of Ec-00_002890.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FN37_ECTSI1.100e-25100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G7I0_ECTSI1.720e-18100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:3045428..3045980 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length150
Hectar predicted targeting categoryno signal peptide or anchor
Gene idEc-00_002890.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_002890Ec-00_002890Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 3045428..3045980 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002890.1.1Ec-00_002890.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3045428..3045444 +
Ec-00_002890.1.2Ec-00_002890.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3045848..3045980 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002890.1CDS:Ec-00_002890.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 3045428..3045444 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002890.1Ec-00_002890.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 3045428..3045980 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_002890.1 ID=Ec-00_002890.1|Name=Ec-00_002890.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=50bp
MADLRREATSGSRFFKARMVEAAGPSTLATLGPIVKLLLDGDNDEDGAR*
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spliced messenger RNA

>Ec-00_002890.1 ID=Ec-00_002890.1|Name=Ec-00_002890.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=150bp|location=Sequence derived from alignment at chr_00:3045428..3045980+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGATCTCCGCAGGGAGGCCACCTCCGGTTCTCGGTTCTTTAAAGC
CCGAATGGTGGAGGCCGCCGGGCCGTCGACACTTGCCACCCTGGGGCCGA
TCGTCAAGTTGCTCCTCGATGGCGACAACGATGAGGATGGTGCCCGATAG
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protein sequence of Ec-00_002890.1

>Ec-00_002890.1 ID=Ec-00_002890.1|Name=Ec-00_002890.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=50bp
MADLRREATSGSRFFKARMVEAAGPSTLATLGPIVKLLLDGDNDEDGAR*
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mRNA from alignment at chr_00:3045428..3045980+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_002890.1 ID=Ec-00_002890.1|Name=Ec-00_002890.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=553bp|location=Sequence derived from alignment at chr_00:3045428..3045980+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGCTGATCTCCGCAGGTGAGAGGTCTAGGCCGCAGGAACGAAGAAGCT
TCTTCAACTCGAGACCACCGATTACAGCCCTCTGCCTCCTTGATCGTTCA
TGAAATGTGGCATTGTAGTTATGATTGTGATGTTTAGGTTTGTCGCGTGT
GCGGCTGTTGTTGCTGCTACCATTATACCTGGTATGTATGTCGTTTACAC
GCGGGTCGCGTTGATGGCATGCCAATAAGTGCAGCTGTTGGTTGTTCGCC
CCGTCAAGTACTGTACGAAGTGAAGCAGCTACAGTGGTCGAAGAGGTCAC
AGCACGAAAATCTGTATTGTTCGCACAGGAACCAGGTCTCTTACTCCCCT
CCCCTCTCATCTCGTTTCCCTCCCCCGTTTCCTCTCACTTGGCGACTCGT
TGCTGGAGCTGCCTTCTCAGGGAGGCCACCTCCGGTTCTCGGTTCTTTAA
AGCCCGAATGGTGGAGGCCGCCGGGCCGTCGACACTTGCCACCCTGGGGC
CGATCGTCAAGTTGCTCCTCGATGGCGACAACGATGAGGATGGTGCCCGA
TAG
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Coding sequence (CDS) from alignment at chr_00:3045428..3045980+

>Ec-00_002890.1 ID=Ec-00_002890.1|Name=Ec-00_002890.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=150bp|location=Sequence derived from alignment at chr_00:3045428..3045980+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGCTGATCTCCGCAGGGAGGCCACCTCCGGTTCTCGGTTCTTTAAAGC
CCGAATGGTGGAGGCCGCCGGGCCGTCGACACTTGCCACCCTGGGGCCGA
TCGTCAAGTTGCTCCTCGATGGCGACAACGATGAGGATGGTGCCCGATAG
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Synonyms
The feature 'Ec-00_002890.1' has the following synonyms
Synonym
Esi1737_0001
Esi_1737_0001