Ec-00_002840.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_002840.1
Unique NameEc-00_002840.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length253
Homology
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BLAST of Ec-00_002840.1 vs. uniprot
Match: D7FMD9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMD9_ECTSI)

HSP 1 Score: 434 bits (1115), Expect = 1.290e-152
Identity = 252/252 (100.00%), Postives = 252/252 (100.00%), Query Frame = 1 
Query:    1 MTGVALSSLHKFLLYGFIRKDCPRVKEGITLVAQAISRCHFEETDPESDELVLMKLLELSALCLRCEVGDLLTDESCWNIFVACYNLYHITTDDKSFGLLRDTAGNTLAHIVLMLFSRPRVSRASKSAAPGGAATADATVAAGGAVLHETLGQKAGAEARDCPPTEPSKAPPTPGGDRDGLAQASPXXXXXXXXXXXXXXXXXXXXXXXXXXXKNPFGGGKGVAPPLKRGEEEEPWASPHRTQQEGARPRVQ 756
            MTGVALSSLHKFLLYGFIRKDCPRVKEGITLVAQAISRCHFEETDPESDELVLMKLLELSALCLRCEVGDLLTDESCWNIFVACYNLYHITTDDKSFGLLRDTAGNTLAHIVLMLFSRPRVSRASKSAAPGGAATADATVAAGGAVLHETLGQKAGAEARDCPPTEPSKAPPTPGGDRDGLAQASPXXXXXXXXXXXXXXXXXXXXXXXXXXXKNPFGGGKGVAPPLKRGEEEEPWASPHRTQQEGARPRVQ
Sbjct:    1 MTGVALSSLHKFLLYGFIRKDCPRVKEGITLVAQAISRCHFEETDPESDELVLMKLLELSALCLRCEVGDLLTDESCWNIFVACYNLYHITTDDKSFGLLRDTAGNTLAHIVLMLFSRPRVSRASKSAAPGGAATADATVAAGGAVLHETLGQKAGAEARDCPPTEPSKAPPTPGGDRDGLAQASPXXXXXXXXXXXXXXXXXXXXXXXXXXXKNPFGGGKGVAPPLKRGEEEEPWASPHRTQQEGARPRVQ 252
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BLAST of Ec-00_002840.1 vs. uniprot
Match: D7FVF3_ECTSI (GBF1, ArfGEF protein of the BIG/GBF subfamily n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVF3_ECTSI)

HSP 1 Score: 390 bits (1003), Expect = 1.370e-121
Identity = 210/247 (85.02%), Postives = 215/247 (87.04%), Query Frame = 1 
Query:    1 MTGVALSSLHKFLLYGFIRKDCPRVKEGITLVAQAISRCHFEETDPESDELVLMKLLELSALCLRCEVGDLLTDESCWNIFVACYNLYHITTDDKSFGLLRDTAGNTLAHIVLMLFSRPRVSRASKSAAPGGAATADATVAAGGAVLHETLGQKAGAEARDCPPTEPSKAPPTPGGDRDGLAQASPXXXXXXXXXXXXXXXXXXXXXXXXXXXKNPFGGGKGVAPPLKRGEEEEPWASPHRTQQEGA 741
            MTGVALSSLHKFLLYGFIRKDCPRVKEGITLVAQAISRCHFEETDPESDELVLMKLLELSALCLRCEVGDLLTDESCWNIFVACYNLYHITTDDKSFGLLRDTAGNTLAHIVLMLFSRPRVSRASKSAAPGGAATADATVAAGGAVLHETLGQKAGAEARDCPPTEPSKAPPTPGGDRDGLAQASPXXXXXX                     + PFG G+GV PPL+ G+EEEPW S      +GA
Sbjct:   90 MTGVALSSLHKFLLYGFIRKDCPRVKEGITLVAQAISRCHFEETDPESDELVLMKLLELSALCLRCEVGDLLTDESCWNIFVACYNLYHITTDDKSFGLLRDTAGNTLAHIVLMLFSRPRVSRASKSAAPGGAATADATVAAGGAVLHETLGQKAGAEARDCPPTEPSKAPPTPGGDRDGLAQASPXXXXXXGLWRHGSSSKAGDEEGSSSGKQTPFGRGRGVPPPLEGGQEEEPWPSLDGANDDGA 336
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BLAST of Ec-00_002840.1 vs. uniprot
Match: A0A6H5JJL6_9PHAE (SEC7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJL6_9PHAE)

HSP 1 Score: 357 bits (915), Expect = 1.340e-109
Identity = 190/247 (76.92%), Postives = 196/247 (79.35%), Query Frame = 1 
Query:    1 MTGVALSSLHKFLLYGFIRKDCPRVKEGITLVAQAISRCHFEETDPESDELVLMKLLELSALCLRCEVGDLLTDESCWNIFVACYNLYHITTDDKSFGLLRDTAGNTLAHIVLMLFSRPRVSRASKSAAPGGAATADATVAAGGAVLHETLGQKAGAEARDCPPTEPSKAPPTPGGDRDGLAQASPXXXXXXXXXXXXXXXXXXXXXXXXXXXKNPFGGGKGVAPPLKRGEEEEPWASPHRTQQEGA 741
            MTGVALSSLHKFLLYGFIRKDCPRVKEGITLVAQAISRCHFEETDPESDELVLMKLLELSALCLRCEVGDLLTDESCWNIFVACYNLYHITT+DKSFGLLRDTAGNTLAHIVLMLFS PRVSRASKSAAPGGA  ADATVAAG AVLHET GQKAG E RD PP + SKAPPTPGGD DGLAQ SP                           + PFG G GV PPL+ G+EEEPW S      +GA
Sbjct:   90 MTGVALSSLHKFLLYGFIRKDCPRVKEGITLVAQAISRCHFEETDPESDELVLMKLLELSALCLRCEVGDLLTDESCWNIFVACYNLYHITTNDKSFGLLRDTAGNTLAHIVLMLFSHPRVSRASKSAAPGGALRADATVAAGKAVLHETQGQKAGEEPRDFPPMDQSKAPPTPGGDGDGLAQGSPPSPAAAGLWRHGSSKAGDEEGSSSGGKQTPFGRGGGVPPPLEGGQEEEPWPSLDGANDDGA 336
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BLAST of Ec-00_002840.1 vs. uniprot
Match: A0A836CJX6_9STRA (Sec7 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJX6_9STRA)

HSP 1 Score: 167 bits (422), Expect = 2.080e-43
Identity = 81/120 (67.50%), Postives = 99/120 (82.50%), Query Frame = 1 
Query:    1 MTGVALSSLHKFLLYGFIRKDCPRVKEGITLVAQAISRCHFEETDPESDELVLMKLLELSALCLRCEVGDLLTDESCWNIFVACYNLYHITTDDKSFGLLRDTAGNTLAHIVLMLFSRPR 360
            MTG ALSSLHKFLLYGF+  + PR +EGI  +A++IS  HFEETDPESDE+VLMKLLELSALCLRCEVG LL+DE CW+IF +CY    I++ ++   LL +TAGNT+AHIVL++FSRPR
Sbjct:   91 MTGAALSSLHKFLLYGFMTPESPRAREGIDRIARSISNFHFEETDPESDEVVLMKLLELSALCLRCEVGRLLSDERCWDIFQSCYG---ISSQERVTSLLGNTAGNTIAHIVLIVFSRPR 207
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BLAST of Ec-00_002840.1 vs. uniprot
Match: A0A7S3GVM9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GVM9_9STRA)

HSP 1 Score: 120 bits (301), Expect = 3.090e-29
Identity = 61/118 (51.69%), Postives = 78/118 (66.10%), Query Frame = 1 
Query:    1 MTGVALSSLHKFLLYGFIRKDCPRVKEGITLVAQAISRCHFEETDPESDELVLMKLLELSALCLRCEVGDLLTDESCWNIFVACYNLYHITTDDKSFGLLRDTAGNTLAHIVLMLFSR 354
            +T  AL+SL KF LYGF+ +  PRV+EGITL+A  ISRC FEETD ESDEL+LMKLLELS LC RC    LLT  S W+++  C ++++     K   +L+  A N L H+ L  F R
Sbjct:   23 LTSFALTSLSKFALYGFLSEQYPRVQEGITLIANCISRCIFEETDWESDELILMKLLELSTLCYRCNASKLLTIASAWDMYNTCISIHNHYRASK---ILKSEAENALVHLTLSAFGR 137
[Close]
BLAST of Ec-00_002840.1 vs. uniprot
Match: A0A482SVF2_9ARCH (SEC7 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SVF2_9ARCH)

HSP 1 Score: 113 bits (283), Expect = 6.540e-25
Identity = 57/118 (48.31%), Postives = 73/118 (61.86%), Query Frame = 1 
Query:    1 MTGVALSSLHKFLLYGFIRKDCPRVKEGITLVAQAISRCHFEETDPESDELVLMKLLELSALCLRCEVGDLLTDESCWNIFVACYNLYHITTDDKSFGLLRDTAGNTLAHIVLMLFSR 354
            +T  ALS+L KF LYGF     P +K  ++LVA  I+ C FEETD ESDEL+LMKLLELSALC RC   D LT  S W I+  C ++++     K   +LR  A   L H+ L +F+R
Sbjct:   91 LTSAALSALSKFALYGFFNTRFPNIKAAMSLVADCIAHCEFEETDWESDELILMKLLELSALCFRCNAADELTVHSAWEIYCTCISIHNHYRASK---ILRSEAETALVHLTLSIFNR 205
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BLAST of Ec-00_002840.1 vs. uniprot
Match: A0A1V9ZDS2_9STRA (SEC7 domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZDS2_9STRA)

HSP 1 Score: 113 bits (282), Expect = 9.650e-25
Identity = 57/118 (48.31%), Postives = 77/118 (65.25%), Query Frame = 1 
Query:    1 MTGVALSSLHKFLLYGFIRKDCPRVKEGITLVAQAISRCHFEETDPESDELVLMKLLELSALCLRCEVGDLLTDESCWNIFVACYNLYHITTDDKSFGLLRDTAGNTLAHIVLMLFSR 354
            +TG A+SSL+KFLLYG IR D  R  E I  +A  +SRC FEET  + DE+VLMKL+EL   C+RCE G L++ E+ W +   CY+   I+   ++   L  TA NTLAH++L +F R
Sbjct:   89 ITGAAVSSLNKFLLYGLIRPDGLRATEAINRIALCVSRCRFEETHRDVDEMVLMKLMELLECCVRCEAGKLISGENIWKMVHTCYS---ISCQPRASMHLSHTAENTLAHVILTVFDR 203
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BLAST of Ec-00_002840.1 vs. uniprot
Match: A0A425CZB2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A425CZB2_9STRA)

HSP 1 Score: 107 bits (266), Expect = 1.420e-24
Identity = 56/118 (47.46%), Postives = 73/118 (61.86%), Query Frame = 1 
Query:    1 MTGVALSSLHKFLLYGFIRKDCPRVKEGITLVAQAISRCHFEETDPESDELVLMKLLELSALCLRCEVGDLLTDESCWNIFVACYNLYHITTDDKSFGLLRDTAGNTLAHIVLMLFSR 354
            +TG A+SSL+KFLLYG I  D  R  E I  +A  +SRC FEET  + DE+VLMKLLEL   CLRCE G L++ ++ WN+  A  +L H+             A NTLAH++L +F R
Sbjct:   89 ITGAAISSLNKFLLYGLIPPDGLRATEAINRIALCVSRCRFEETHRDVDEMVLMKLLELLEFCLRCEAGPLISGDNVWNMARASMHLVHM-------------AENTLAHVILTVFDR 193
[Close]
BLAST of Ec-00_002840.1 vs. uniprot
Match: W4FL37_9STRA (SEC7 domain-containing protein n=8 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FL37_9STRA)

HSP 1 Score: 112 bits (280), Expect = 1.770e-24
Identity = 58/118 (49.15%), Postives = 76/118 (64.41%), Query Frame = 1 
Query:    1 MTGVALSSLHKFLLYGFIRKDCPRVKEGITLVAQAISRCHFEETDPESDELVLMKLLELSALCLRCEVGDLLTDESCWNIFVACYNLYHITTDDKSFGLLRDTAGNTLAHIVLMLFSR 354
            +TG A+SSL+KFLLYG I  D  R  E I  +A  +SRC FEET  + DE+VLMKLLEL   CLRCE G L++ ++ WN+   CY+   I T  ++   L   A NTLAH++L +F R
Sbjct:   89 ITGAAISSLNKFLLYGLIPPDGLRATEAINRIALCVSRCRFEETHRDVDEMVLMKLLELLEFCLRCEAGPLISGDNVWNMVHTCYS---ICTQARASMHLVHMAENTLAHVILTVFDR 203
[Close]
BLAST of Ec-00_002840.1 vs. uniprot
Match: A0A7R9YE87_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YE87_9STRA)

HSP 1 Score: 111 bits (277), Expect = 4.600e-24
Identity = 55/118 (46.61%), Postives = 80/118 (67.80%), Query Frame = 1 
Query:    1 MTGVALSSLHKFLLYGFIRKDCPRVKEGITLVAQAISRCHFEETDPESDELVLMKLLELSALCLRCEVGDLLTDESCWNIFVACYNLYHITTDDKSFGLLRDTAGNTLAHIVLMLFSR 354
            +TG+AL ++ KFLLYG I  D  R  +G+ ++A+A+  C FEET+   DE VL+ LL+L+  CLR +VG LLTD+S W +F  C+    I+  +K+  LLR TA N LA++VL++F R
Sbjct:   85 VTGMALGAMQKFLLYGIICMDSLRAFDGVNMIAEAVCTCQFEETNRAMDEAVLINLLDLAQSCLRSDVGVLLTDDSIWGLFEVCFA---ISKQEKTSSLLRATAFNALANMVLLVFGR 199
The following BLAST results are available for this feature:
BLAST of Ec-00_002840.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMD9_ECTSI1.290e-152100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FVF3_ECTSI1.370e-12185.02GBF1, ArfGEF protein of the BIG/GBF subfamily n=1 ... [more]
A0A6H5JJL6_9PHAE1.340e-10976.92SEC7 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A836CJX6_9STRA2.080e-4367.50Sec7 domain-containing protein n=1 Tax=Tribonema m... [more]
A0A7S3GVM9_9STRA3.090e-2951.69Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A482SVF2_9ARCH6.540e-2548.31SEC7 domain-containing protein n=1 Tax=archaeon Ta... [more]
A0A1V9ZDS2_9STRA9.650e-2548.31SEC7 domain-containing protein n=1 Tax=Thraustothe... [more]
A0A425CZB2_9STRA1.420e-2447.46Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
W4FL37_9STRA1.770e-2449.15SEC7 domain-containing protein n=8 Tax=Aphanomyces... [more]
A0A7R9YE87_9STRA4.600e-2446.61Hypothetical protein n=2 Tax=Pinguiococcus pyrenoi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:2970736..2972049 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score439.5
Seed ortholog evalue1.1e-120
Seed eggNOG ortholog2880.D7FMD9
Preferred nameGBF1
Length759
KEGG koko:K18443
KEGG Pathwayko04144,map04144
Hectar predicted targeting categoryother localisation
Gene idEc-00_002840.1
GOsGO:0000003,GO:0000137,GO:0000139,GO:0000278,GO:0000281,GO:0000578,GO:0000902,GO:0000910,GO:0000911,GO:0001736,GO:0001738,GO:0001775,GO:0002009,GO:0002064,GO:0002252,GO:0002263,GO:0002376,GO:0002790,GO:0003006,GO:0003674,GO:0005085,GO:0005086,GO:0005488,GO:0005515,GO:0005543,GO:0005547,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005783,GO:0005793,GO:0005794,GO:0005795,GO:0005798,GO:0005801,GO:0005802,GO:0005829,GO:0005886,GO:0005933,GO:0006810,GO:0006888,GO:0006890,GO:0006891,GO:0006892,GO:0006893,GO:0006895,GO:0006897,GO:0006900,GO:0006901,GO:0006903,GO:0006914,GO:0006928,GO:0006935,GO:0006955,GO:0006996,GO:0007005,GO:0007010,GO:0007029,GO:0007030,GO:0007049,GO:0007155,GO:0007163,GO:0007164,GO:0007275,GO:0007346,GO:0007389,GO:0007424,GO:0007431,GO:0008104,GO:0008150,GO:0008152,GO:0008289,GO:0009056,GO:0009058,GO:0009306,GO:0009605,GO:0009606,GO:0009607,GO:0009615,GO:0009653,GO:0009790,GO:0009791,GO:0009793,GO:0009798,GO:0009826,GO:0009846,GO:0009856,GO:0009880,GO:0009888,GO:0009914,GO:0009926,GO:0009942,GO:0009966,GO:0009987,GO:0010008,GO:0010015,GO:0010053,GO:0010054,GO:0010087,GO:0010101,GO:0010102,GO:0010154,GO:0010256,GO:0010274,GO:0010311,GO:0010540,GO:0010646,GO:0010817,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016049,GO:0016050,GO:0016192,GO:0016197,GO:0016236,GO:0016477,GO:0016482,GO:0017016,GO:0017137,GO:0019898,GO:0019899,GO:0021700,GO:0022402,GO:0022411,GO:0022414,GO:0022610,GO:0022622,GO:0023051,GO:0023052,GO:0030010,GO:0030029,GO:0030036,GO:0030154,GO:0030593,GO:0030595,GO:0030855,GO:0031090,GO:0031224,GO:0031252,GO:0031267,GO:0031410,GO:0031982,GO:0031984,GO:0031985,GO:0032012,GO:0032501,GO:0032502,GO:0032506,GO:0032509,GO:0032879,GO:0032880,GO:0032940,GO:0032989,GO:0033036,GO:0033363,GO:0033365,GO:0034067,GO:0034613,GO:0035091,GO:0035148,GO:0035149,GO:0035150,GO:0035151,GO:0035152,GO:0035158,GO:0035159,GO:0035239,GO:0035272,GO:0035295,GO:0035296,GO:0035964,GO:0040007,GO:0040011,GO:0042147,GO:0042221,GO:0042330,GO:0042802,GO:0042803,GO:0042886,GO:0042995,GO:0043001,GO:0043087,GO:0043167,GO:0043168,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044248,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0044706,GO:0045184,GO:0045229,GO:0046578,GO:0046903,GO:0046907,GO:0046983,GO:0048193,GO:0048194,GO:0048199,GO:0048200,GO:0048205,GO:0048209,GO:0048308,GO:0048313,GO:0048316,GO:0048364,GO:0048468,GO:0048469,GO:0048513,GO:0048527,GO:0048528,GO:0048583,GO:0048589,GO:0048608,GO:0048646,GO:0048729,GO:0048731,GO:0048732,GO:0048764,GO:0048765,GO:0048856,GO:0048869,GO:0048870,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0050900,GO:0051020,GO:0051049,GO:0051056,GO:0051179,GO:0051234,GO:0051301,GO:0051336,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051674,GO:0051704,GO:0051707,GO:0051716,GO:0051726,GO:0060326,GO:0060341,GO:0060429,GO:0060541,GO:0060560,GO:0060627,GO:0060918,GO:0061024,GO:0061162,GO:0061339,GO:0061458,GO:0061640,GO:0061919,GO:0061951,GO:0065007,GO:0065008,GO:0065009,GO:0070727,GO:0070887,GO:0070971,GO:0070972,GO:0070973,GO:0071554,GO:0071555,GO:0071621,GO:0071695,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0071985,GO:0072593,GO:0072657,GO:0072659,GO:0080025,GO:0080119,GO:0090066,GO:0090150,GO:0090166,GO:0090406,GO:0090558,GO:0090627,GO:0090696,GO:0090697,GO:0090698,GO:0097111,GO:0097529,GO:0097530,GO:0097708,GO:0098586,GO:0098588,GO:0098657,GO:0098772,GO:0098791,GO:0098805,GO:0098876,GO:0099402,GO:0120025,GO:1901981,GO:1902410,GO:1902531,GO:1902936,GO:1903008,GO:1903047,GO:1903409,GO:1903420,GO:1903827,GO:1905392,GO:1905393,GO:1990266,GO:1990778,GO:2000008
EggNOG free text desc.regulation of ARF protein signal transduction
EggNOG OGsCOG5307@1,KOG0928@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_002840Ec-00_002840Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 2970736..2972049 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002840.1.1Ec-00_002840.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2970736..2970837 +
Ec-00_002840.1.2Ec-00_002840.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2971095..2971157 +
Ec-00_002840.1.3Ec-00_002840.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2971456..2972049 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002840.1CDS:Ec-00_002840.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 2970736..2970837 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002840.1Ec-00_002840.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 2970736..2972049 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_002840.1 ID=Ec-00_002840.1|Name=Ec-00_002840.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=253bp
MTGVALSSLHKFLLYGFIRKDCPRVKEGITLVAQAISRCHFEETDPESDE
LVLMKLLELSALCLRCEVGDLLTDESCWNIFVACYNLYHITTDDKSFGLL
RDTAGNTLAHIVLMLFSRPRVSRASKSAAPGGAATADATVAAGGAVLHET
LGQKAGAEARDCPPTEPSKAPPTPGGDRDGLAQASPPPPPPPRVWGPRAS
SKGGDQEGNHHRQKNPFGGGKGVAPPLKRGEEEEPWASPHRTQQEGARPR
VQ*
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spliced messenger RNA

>Ec-00_002840.1 ID=Ec-00_002840.1|Name=Ec-00_002840.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=759bp|location=Sequence derived from alignment at chr_00:2970736..2972049+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGACAGGCGTGGCGCTGAGCTCGCTGCACAAGTTCCTCCTGTACGGCTT
CATCCGGAAGGACTGCCCTCGCGTGAAGGAAGGGATAACCCTCGTGGCAC
AGGCCATCAGCAGATGCCACTTCGAGGAGACCGACCCAGAGAGCGACGAG
CTGGTGCTGATGAAGCTCTTGGAGCTCTCCGCGCTGTGCCTGAGGTGCGA
AGTGGGAGACTTGCTTACCGACGAGAGCTGCTGGAACATCTTCGTGGCCT
GCTACAACCTCTACCACATCACCACGGACGACAAGTCGTTCGGGCTCCTC
CGGGACACTGCGGGCAACACCCTGGCGCACATCGTGCTGATGCTGTTCAG
CCGCCCGCGGGTGTCTCGAGCGAGCAAGTCGGCGGCACCCGGCGGGGCAG
CAACGGCTGACGCAACAGTAGCGGCGGGCGGCGCCGTCCTCCACGAAACT
CTGGGCCAGAAAGCGGGAGCAGAGGCGCGGGACTGTCCACCGACGGAACC
ATCAAAAGCCCCCCCGACGCCGGGCGGCGATAGAGACGGGCTGGCGCAGG
CTAGCCCCCCCCCCCCCCCCCCCCCCCGGGTGTGGGGCCCCCGGGCCTCC
TCCAAAGGAGGGGACCAAGAAGGGAACCACCACCGCCAAAAAAACCCCTT
TGGGGGGGGAAAGGGGGTGGCCCCCCCCCTAAAAAGGGGGGAAGAAGAAG
AACCCTGGGCCTCCCCCCACCGAACCCAACAAGAAGGGGCCCGCCCAAGG
GTCCAATAA
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protein sequence of Ec-00_002840.1

>Ec-00_002840.1 ID=Ec-00_002840.1|Name=Ec-00_002840.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=253bp
MTGVALSSLHKFLLYGFIRKDCPRVKEGITLVAQAISRCHFEETDPESDE
LVLMKLLELSALCLRCEVGDLLTDESCWNIFVACYNLYHITTDDKSFGLL
RDTAGNTLAHIVLMLFSRPRVSRASKSAAPGGAATADATVAAGGAVLHET
LGQKAGAEARDCPPTEPSKAPPTPGGDRDGLAQASPPPPPPPRVWGPRAS
SKGGDQEGNHHRQKNPFGGGKGVAPPLKRGEEEEPWASPHRTQQEGARPR
VQ*
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mRNA from alignment at chr_00:2970736..2972049+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_002840.1 ID=Ec-00_002840.1|Name=Ec-00_002840.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1314bp|location=Sequence derived from alignment at chr_00:2970736..2972049+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGACAGGCGTGGCGCTGAGCTCGCTGCACAAGTTCCTCCTGTACGGCTT
CATCCGGAAGGACTGCCCTCGCGTGAAGGAAGGGATAACCCTCGTGGCAC
AGGTGATGATGCGCCATCCGTTTTTACCTCGACGACGACGAACCCCACCC
ACGCCTCGACCTCGATTCGTTAACGCACGCTTCGCGCGTGACCGGTGTGA
ACGAACATCCTATGGCAGTGGACCTGTTAGCTCTGGTATCATCCGTCCAT
GCCTTTTGCTTGTCCCCGCTTTTCTTACCGATGTTTTCTCGTCCATACCG
CCCCCTTTGCTTAAGAGACGCTCTTATTGCTTTTCGTGCTGCCCTTGCGG
CGTGTGCAGGCCATCAGCAGATGCCACTTCGAGGAGACCGACCCAGAGAG
CGACGAGCTGGTGCTGATGAAGGTAGGTCCACAACCACAAAGGTCTCGCT
CTGCACAATGGAGAGCACCCTCCACACACATGTAGTATGTTTATGATTCA
TATTTACCTGACATGCAAGGGTAGAACTACCACCTACGTGCAATATGTGG
CCCTCTGTGTTGGTTCTCGGAGTCTCGCCATGTGAACCGTCTTGACACAC
GTAAAACACAGGAATGCTCACAATCATTAAACTAACCTGCCGGAGCCCTT
GTTTCCGGGACAAAACTCGGGTCTCGTTTCTTCTTGTTTTTTTCTCTGGG
ACGCGCTTCGTTTTCGGCAGCTCTTGGAGCTCTCCGCGCTGTGCCTGAGG
TGCGAAGTGGGAGACTTGCTTACCGACGAGAGCTGCTGGAACATCTTCGT
GGCCTGCTACAACCTCTACCACATCACCACGGACGACAAGTCGTTCGGGC
TCCTCCGGGACACTGCGGGCAACACCCTGGCGCACATCGTGCTGATGCTG
TTCAGCCGCCCGCGGGTGTCTCGAGCGAGCAAGTCGGCGGCACCCGGCGG
GGCAGCAACGGCTGACGCAACAGTAGCGGCGGGCGGCGCCGTCCTCCACG
AAACTCTGGGCCAGAAAGCGGGAGCAGAGGCGCGGGACTGTCCACCGACG
GAACCATCAAAAGCCCCCCCGACGCCGGGCGGCGATAGAGACGGGCTGGC
GCAGGCTAGCCCCCCCCCCCCCCCCCCCCCCCGGGTGTGGGGCCCCCGGG
CCTCCTCCAAAGGAGGGGACCAAGAAGGGAACCACCACCGCCAAAAAAAC
CCCTTTGGGGGGGGAAAGGGGGTGGCCCCCCCCCTAAAAAGGGGGGAAGA
AGAAGAACCCTGGGCCTCCCCCCACCGAACCCAACAAGAAGGGGCCCGCC
CAAGGGTCCAATAA
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Coding sequence (CDS) from alignment at chr_00:2970736..2972049+

>Ec-00_002840.1 ID=Ec-00_002840.1|Name=Ec-00_002840.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=759bp|location=Sequence derived from alignment at chr_00:2970736..2972049+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGACAGGCGTGGCGCTGAGCTCGCTGCACAAGTTCCTCCTGTACGGCTT
CATCCGGAAGGACTGCCCTCGCGTGAAGGAAGGGATAACCCTCGTGGCAC
AGGCCATCAGCAGATGCCACTTCGAGGAGACCGACCCAGAGAGCGACGAG
CTGGTGCTGATGAAGCTCTTGGAGCTCTCCGCGCTGTGCCTGAGGTGCGA
AGTGGGAGACTTGCTTACCGACGAGAGCTGCTGGAACATCTTCGTGGCCT
GCTACAACCTCTACCACATCACCACGGACGACAAGTCGTTCGGGCTCCTC
CGGGACACTGCGGGCAACACCCTGGCGCACATCGTGCTGATGCTGTTCAG
CCGCCCGCGGGTGTCTCGAGCGAGCAAGTCGGCGGCACCCGGCGGGGCAG
CAACGGCTGACGCAACAGTAGCGGCGGGCGGCGCCGTCCTCCACGAAACT
CTGGGCCAGAAAGCGGGAGCAGAGGCGCGGGACTGTCCACCGACGGAACC
ATCAAAAGCCCCCCCGACGCCGGGCGGCGATAGAGACGGGCTGGCGCAGG
CTAGCCCCCCCCCCCCCCCCCCCCCCCGGGTGTGGGGCCCCCGGGCCTCC
TCCAAAGGAGGGGACCAAGAAGGGAACCACCACCGCCAAAAAAACCCCTT
TGGGGGGGGAAAGGGGGTGGCCCCCCCCCTAAAAAGGGGGGAAGAAGAAG
AACCCTGGGCCTCCCCCCACCGAACCCAACAAGAAGGGGCCCGCCCAAGG
GTCCAATAA
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Synonyms
The feature 'Ec-00_002840.1' has the following synonyms
Synonym
Esi1680_0001
Esi_1680_0001