Ec-00_002800.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_002800.1
Unique NameEc-00_002800.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length66
Homology
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BLAST of Ec-00_002800.1 vs. uniprot
Match: D7FMD5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMD5_ECTSI)

HSP 1 Score: 127 bits (318), Expect = 4.030e-37
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 1 
Query:    1 MVKRLKSLLSKLQKSSHSKDADLAALKAPAPPPKAFTVALRVRHEGSTWCFVKATQMSPTREVAG 195
            MVKRLKSLLSKLQKSSHSKDADLAALKAPAPPPKAFTVALRVRHEGSTWCFVKATQMSPTREVAG
Sbjct:    1 MVKRLKSLLSKLQKSSHSKDADLAALKAPAPPPKAFTVALRVRHEGSTWCFVKATQMSPTREVAG 65
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BLAST of Ec-00_002800.1 vs. uniprot
Match: A0A6H5KSR4_9PHAE (GRIP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSR4_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 4.320e-27
Identity = 58/64 (90.62%), Postives = 58/64 (90.62%), Query Frame = 1 
Query:    4 VKRLKSLLSKLQKSSHSKDADLAALKAPAPPPKAFTVALRVRHEGSTWCFVKATQMSPTREVAG 195
            VKRLKSLLSKLQKSSHSKDADLAALKAPAPPPKAFTVALRVRHEGSTWCFVKATQ   T E  G
Sbjct: 1171 VKRLKSLLSKLQKSSHSKDADLAALKAPAPPPKAFTVALRVRHEGSTWCFVKATQQPATSEDGG 1234
The following BLAST results are available for this feature:
BLAST of Ec-00_002800.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FMD5_ECTSI4.030e-37100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KSR4_9PHAE4.320e-2790.63GRIP domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:2947668..2948584 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length198
Hectar predicted targeting categoryother localisation
Gene idEc-00_002800.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_002800Ec-00_002800Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 2947668..2948584 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002800.1.1Ec-00_002800.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2947668..2947670 +
Ec-00_002800.1.2Ec-00_002800.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2948147..2948311 +
Ec-00_002800.1.3Ec-00_002800.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2948555..2948584 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002800.1CDS:Ec-00_002800.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 2947668..2947670 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002800.1Ec-00_002800.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 2947668..2948584 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_002800.1 ID=Ec-00_002800.1|Name=Ec-00_002800.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=66bp
MVKRLKSLLSKLQKSSHSKDADLAALKAPAPPPKAFTVALRVRHEGSTWC
FVKATQMSPTREVAG*
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spliced messenger RNA

>Ec-00_002800.1 ID=Ec-00_002800.1|Name=Ec-00_002800.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=198bp|location=Sequence derived from alignment at chr_00:2947668..2948584+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGAAGCGCCTGAAGTCTCTGCTGTCCAAGCTGCAGAAGTCGAGCCA
CAGCAAGGACGCAGACCTTGCCGCCCTCAAGGCGCCCGCGCCGCCGCCGA
AGGCGTTCACCGTGGCCCTCAGGGTGCGCCACGAGGGCAGCACGTGGTGT
TTCGTCAAAGCTACACAGATGTCGCCGACACGGGAGGTTGCCGGCTAG
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protein sequence of Ec-00_002800.1

>Ec-00_002800.1 ID=Ec-00_002800.1|Name=Ec-00_002800.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=66bp
MVKRLKSLLSKLQKSSHSKDADLAALKAPAPPPKAFTVALRVRHEGSTWC
FVKATQMSPTREVAG*
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mRNA from alignment at chr_00:2947668..2948584+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_002800.1 ID=Ec-00_002800.1|Name=Ec-00_002800.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=917bp|location=Sequence derived from alignment at chr_00:2947668..2948584+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGTGAGCGTTAATAAATTGTTGACCGTTTTTAGTGTTTTAATGTGTTG
ATTTATTCCCCCATTTTGATTGTACCCGCGTAGCACACGTTTGATTGGGC
TCATTAAGCGGTGTAAACGGGCCGGAGGGGTGCGGGGAAATGTCGCCGCC
CCGTGGTAGAGCAACGCTGTAGGGGGGTGCCGTGAAGCAGAATGCCGTCC
GTGGCACAGGGGGTGCTAGCGTTTTTTTCAGCACAAAACGAGCAGGAGGA
AGTAGTTGTAACAACGCAGATGGGGGTAACGCGACTTGTGAAGGAAGTGC
TTTTCGTCCGACACGCGTACCACACACACAAGCACTTCACTTCATGTGTG
CTGAAAAAATGCAAACAGCGATAAGGCATGTACACACAAACGTCGATTTC
ATTTCGTTGTATCTCACGCGTTCTACCCCCCTTGCTGTCCCCTCTGCATA
CCCCCCCCTCCCGGGGCCCACCCGAGAAGGTGAAGCGCCTGAAGTCTCTG
CTGTCCAAGCTGCAGAAGTCGAGCCACAGCAAGGACGCAGACCTTGCCGC
CCTCAAGGCGCCCGCGCCGCCGCCGAAGGCGTTCACCGTGGCCCTCAGGG
TGCGCCACGAGGGCAGCACGTGGTGTTTCGTCAAAGCTACACAGGTATGA
TTGTGTGTGTCGAGCGGGACAGCAGTATTCGGCAGATGTCGTCGCGTGTA
TGCTGCGTCGAATCGGGACAGTATTATATGTTTCGACAACAGGGGCCGGG
GCTCTCGAGCAGGCCGAACATCGTATTCTGTACTGCTGTACTGTGTGTCG
CACGTTTTTTTGCGGTAGATGTGGATGTAAATACGTATCGTATCCCCCCC
GCCCCCCCCCCTCAACGCGTCACGGCGTTTTTTCGAGATGTCGCCGACAC
GGGAGGTTGCCGGCTAG
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Coding sequence (CDS) from alignment at chr_00:2947668..2948584+

>Ec-00_002800.1 ID=Ec-00_002800.1|Name=Ec-00_002800.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=198bp|location=Sequence derived from alignment at chr_00:2947668..2948584+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGTGAAGCGCCTGAAGTCTCTGCTGTCCAAGCTGCAGAAGTCGAGCCA
CAGCAAGGACGCAGACCTTGCCGCCCTCAAGGCGCCCGCGCCGCCGCCGA
AGGCGTTCACCGTGGCCCTCAGGGTGCGCCACGAGGGCAGCACGTGGTGT
TTCGTCAAAGCTACACAGATGTCGCCGACACGGGAGGTTGCCGGCTAG
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Synonyms
The feature 'Ec-00_002800.1' has the following synonyms
Synonym
Esi1662_0001
Esi_1662_0001